Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
MGAM	8972	broad.mit.edu	36	7	141351870	141351871	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004668	exon2	c.71_72insA	p.F24fs	.	.	.
TNS3	64759	broad.mit.edu	36	7	47309272	47309273	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022748	exon22	c.3258_3259insA	p.Q1086fs	.	.	.
AJAP1	55966	broad.mit.edu	36	1	4672442	4672443	+	In_Frame_Ins	INS	-	CCA	CCA	novel		TCGA-AG-4007-01	TCGA-AG-4007-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042478	exon2	c.652_653insCCA	p.A218delinsAT	.	.	.
HOXD9	3235	broad.mit.edu	36	2	176696404	176696405	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014213	exon1	c.662_663insG	p.T221fs	.	.	.
UBN2	254048	broad.mit.edu	36	7	138593849	138593849	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_173569	exon4	c.C739T	p.R247C	.	.	.
CLCN1	1180	broad.mit.edu	36	7	142757652	142757652	+	Silent	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000083	exon21	c.G2469A	p.Q823Q	.	.	.
IQCE	23288	broad.mit.edu	36	7	2599208	2599208	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152558	exon15	c.C1271T	p.A424V	.	.	.
IGFBP3	3486	broad.mit.edu	36	7	45923413	45923413	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000598	exon2	c.G554A	p.R185H	.	.	.
OCM	654231	broad.mit.edu	36	7	5888753	5888753	+	Silent	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001097622	exon2	c.G165A	p.Q55Q	.	.	.
DNAJC30	84277	broad.mit.edu	36	7	72735170	72735170	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032317	exon1	c.G520A	p.E174K	.	.	.
ZP3	7784	broad.mit.edu	36	7	75900222	75900222	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_007155	exon4	c.G321T	p.L107F	.	.	.
TSC22D4	81628	broad.mit.edu	36	7	99903122	99903122	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030935	exon4	c.G967A	p.E323K	.	.	.
TTI1	9675	broad.mit.edu	36	20	36074936	36074936	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014657	exon3	c.G697A	p.V233I	.	.	.
ZSWIM3	140831	broad.mit.edu	36	20	43939879	43939879	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_080752	exon2	c.C1275A	p.F425L	.	.	.
ZSWIM3	140831	broad.mit.edu	36	20	43940159	43940159	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_080752	exon2	c.A1555T	p.N519Y	.	.	.
DHRS4L1	728635	broad.mit.edu	36	14	23575666	23575666	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001082488	exon1	c.C117T	p.A39A	.	.	.
NFATC4	4776	broad.mit.edu	36	14	23914744	23914744	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136022	exon8	c.C2101T	p.R701X	.	.	.
EAPP	55837	broad.mit.edu	36	14	34068348	34068348	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018453	exon4	c.G437A	p.R146K	.	.	.
RALGAPA1	253959	broad.mit.edu	36	14	35111642	35111642	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_194301	exon37	c.G5725A	p.V1909I	.	.	.
VRK1	7443	broad.mit.edu	36	14	96382202	96382202	+	Silent	SNP	A	C	C	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003384	exon4	c.A234C	p.G78G	.	.	.
ZNF70	7621	broad.mit.edu	36	22	22416665	22416665	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021916	exon2	c.G663A	p.K221K	.	.	.
ZC3H7B	23264	broad.mit.edu	36	22	40072024	40072024	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017590	exon14	c.G1531A	p.V511M	.	.	.
SMARCA4	6597	broad.mit.edu	36	19	10996019	10996019	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003072	exon21	c.A2986T	p.I996F	.	.	.
EMR2	30817	broad.mit.edu	36	19	14745750	14745750	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152920	exon4	c.G199A	p.D67N	.	.	.
CASP14	23581	broad.mit.edu	36	19	15025318	15025318	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_012114	exon3	c.G53A	p.R18H	.	.	.
NOTCH3	4854	broad.mit.edu	36	19	15160048	15160048	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000435	exon9	c.C1490T	p.S497L	.	.	.
NWD1	284434	broad.mit.edu	36	19	16760843	16760843	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001007525	exon13	c.G2782T	p.A928S	.	.	.
WDR88	126248	broad.mit.edu	36	19	38331646	38331646	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173479	exon5	c.C669T	p.S223S	.	.	.
ATP4A	495	broad.mit.edu	36	19	40743342	40743342	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000704	exon6	c.C550T	p.R184C	.	.	.
APLP1	333	broad.mit.edu	36	19	41053678	41053678	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024807	exon3	c.C332T	p.T111M	.	.	.
TMIGD2	126259	broad.mit.edu	36	19	4249087	4249087	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001169126	exon2	c.C302T	p.P101L	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45084336	45084336	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003890	exon16	c.G8008A	p.G2670R	.	.	.
ZFP112	7771	broad.mit.edu	36	19	49524751	49524751	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013380	exon4	c.C1399T	p.R467C	.	.	.
CKM	1158	broad.mit.edu	36	19	50512947	50512947	+	Silent	SNP	A	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001824	exon3	c.T324C	p.T108T	.	.	.
NOVA2	4858	broad.mit.edu	36	19	51149021	51149021	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002516	exon3	c.G253A	p.V85I	.	.	.
C19orf75	284369	broad.mit.edu	36	19	56460918	56460918	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_173635	exon4	c.C380T	p.A127V	.	.	.
ZSCAN5B	342933	broad.mit.edu	36	19	61395882	61395882	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001080456	exon1	c.C352G	p.L118V	.	.	.
ZNF471	57573	broad.mit.edu	36	19	61719489	61719489	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020813	exon3	c.T67C	p.F23L	.	.	.
MUC16	94025	broad.mit.edu	36	19	8928649	8928649	+	Silent	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.C19797T	p.T6599T	.	.	.
ZNF846	162993	broad.mit.edu	36	19	9729340	9729340	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077624	exon6	c.G1413A	p.T471T	.	.	.
ABRA	137735	broad.mit.edu	36	8	107851572	107851572	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_139166	exon1	c.G23T	p.S8I	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113336818	113336818	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_198123	exon62	c.G9877T	p.D3293Y	.	.	.
CSMD1	64478	broad.mit.edu	36	8	4482414	4482414	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033225	exon2	c.A160T	p.N54Y	.	.	.
XKR4	114786	broad.mit.edu	36	8	56599058	56599058	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052898	exon3	c.C1671T	p.S557S	.	.	.
EPS8L3	79574	broad.mit.edu	36	1	110102764	110102764	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139053	exon7	c.G509A	p.G170E	.	.	.
LYSMD1	388695	broad.mit.edu	36	1	149404345	149404345	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_212551	exon1	c.C14T	p.S5F	.	.	.
IL6R	3570	broad.mit.edu	36	1	152675156	152675156	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181359	exon6	c.G895A	p.G299R	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	175035842	175035842	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020318	exon21	c.G5153A	p.R1718H	.	.	.
RASAL2	9462	broad.mit.edu	36	1	176656307	176656307	+	Silent	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170692	exon5	c.G603A	p.R201R	.	.	.
KDM5B	10765	broad.mit.edu	36	1	200969565	200969565	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006618	exon23	c.A3496C	p.K1166Q	.	.	.
NEK2	4751	broad.mit.edu	36	1	209909110	209909110	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002497	exon6	c.G953A	p.R318Q	.	.	.
DISP1	84976	broad.mit.edu	36	1	221244543	221244543	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032890	exon8	c.C3181T	p.R1061C	.	.	.
RYR2	6262	broad.mit.edu	36	1	236021403	236021403	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001035	exon93	c.G13528A	p.A4510T	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33809773	33809773	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_052896	exon52	c.C7909T	p.R2637C	.	.	.
RNF207	388591	broad.mit.edu	36	1	6200987	6200987	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207396	exon17	c.C1704T	p.D568D	.	.	.
INADL	10207	broad.mit.edu	36	1	62122560	62122560	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176877	exon22	c.G3023C	p.R1008T	.	.	.
SLC2A7	155184	broad.mit.edu	36	1	9005577	9005577	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_207420	exon3	c.G298T	p.D100Y	.	.	.
RAB39	54734	broad.mit.edu	36	11	107338009	107338009	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017516	exon2	c.C355T	p.R119W	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116837424	116837424	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020693	exon18	c.G3544A	p.V1182I	.	.	.
KCNC1	3746	broad.mit.edu	36	11	17750005	17750005	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004976	exon2	c.G788A	p.R263H	.	.	.
CAT	847	broad.mit.edu	36	11	34434931	34434931	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001752	exon8	c.A1047T	p.K349N	.	.	.
LRRC55	219527	broad.mit.edu	36	11	56711377	56711377	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005210	exon2	c.C873T	p.A291A	.	.	.
APLNR	187	broad.mit.edu	36	11	56760609	56760609	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005161	exon1	c.C446T	p.A149V	.	.	.
ARAP1	116985	broad.mit.edu	36	11	72101247	72101247	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040118	exon6	c.G762A	p.P254P	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78058536	78058536	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001098816	exon32	c.G6502A	p.V2168I	.	.	.
PCF11	51585	broad.mit.edu	36	11	82557597	82557597	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015885	exon8	c.G2572T	p.G858X	.	.	.
NUS1	116150	broad.mit.edu	36	6	118120936	118120936	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138459	exon2	c.A454G	p.I152V	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127838496	127838496	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012279	exon6	c.C2368T	p.R790C	.	.	.
CYP21A2	1589	broad.mit.edu	36	6	32115185	32115185	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000500	exon4	c.G521A	p.C174Y	.	.	.
TNXB	7148	broad.mit.edu	36	6	32144855	32144855	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_019105	exon16	c.C5624T	p.P1875L	.	.	.
ZNF318	24149	broad.mit.edu	36	6	43430809	43430809	+	Silent	SNP	A	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014345	exon4	c.T2241A	p.S747S	.	.	.
PKHD1	5314	broad.mit.edu	36	6	52022950	52022950	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_170724	exon22	c.C2243T	p.A748V	.	.	.
PHIP	55023	broad.mit.edu	36	6	79732192	79732192	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017934	exon29	c.A3326C	p.N1109T	.	.	.
GJB7	375519	broad.mit.edu	36	6	88051031	88051031	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198568	exon3	c.A319G	p.K107E	.	.	.
ABI3	51225	broad.mit.edu	36	17	44648950	44648950	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135186	exon2	c.C176T	p.A59V	.	.	.
NLRP1	22861	broad.mit.edu	36	17	5374672	5374672	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033007	exon11	c.G3283A	p.V1095I	.	.	.
CSH1	1442	broad.mit.edu	36	17	59326346	59326346	+	Silent	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022640	exon4	c.C675T	p.S225S	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59388592	59388592	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000334	exon13	c.G2038T	p.A680S	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59403517	59403517	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000334	exon2	c.G319A	p.A107T	.	.	.
TP53	7157	broad.mit.edu	36	17	7519276	7519276	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001126114	exon5	c.T379C	p.S127P	TP53,urinary_tract,bladder,Substitution - Nonsense,-1	.	.
MYH10	4628	broad.mit.edu	36	17	8353893	8353893	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005964	exon23	c.A2959T	p.I987F	.	.	.
MYH11	4629	broad.mit.edu	36	16	15751650	15751650	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001040114	exon17	c.C1925T	p.T642M	.	.	.
POLR3E	55718	broad.mit.edu	36	16	22241742	22241742	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018119	exon14	c.C1057T	p.R353X	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69533169	69533169	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032821	exon43	c.C6721T	p.Q2241X	.	.	.
CD226	10666	broad.mit.edu	36	18	65713962	65713962	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006566	exon4	c.G682A	p.A228T	.	.	.
SRPRB	58477	broad.mit.edu	36	3	135021152	135021152	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021203	exon8	c.C668A	p.A223D	.	.	.
ESYT3	83850	broad.mit.edu	36	3	139675793	139675793	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_031913	exon20	c.G2377A	p.V793I	.	.	.
TRPC1	7220	broad.mit.edu	36	3	144005644	144005644	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003304	exon10	c.C1791T	p.V597V	.	.	.
MED12L	116931	broad.mit.edu	36	3	152633270	152633270	+	Silent	SNP	T	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053002	exon43	c.T6426G	p.P2142P	.	.	.
SUCNR1	56670	broad.mit.edu	36	3	153081478	153081478	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033050	exon3	c.G457C	p.E153Q	.	.	.
MME	4311	broad.mit.edu	36	3	156367477	156367477	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000902	exon18	c.G1753A	p.E585K	.	.	.
BCHE	590	broad.mit.edu	36	3	167030146	167030146	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000055	exon2	c.C1370T	p.P457L	.	.	.
MASP1	5648	broad.mit.edu	36	3	188437032	188437032	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_139125	exon11	c.C1321T	p.R441C	.	.	.
UBE2E2	7325	broad.mit.edu	36	3	23516110	23516110	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152653	exon4	c.C235A	p.P79T	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38576830	38576830	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001099405	exon23	c.G4057A	p.V1353M	.	.	.
GRM2	2912	broad.mit.edu	36	3	51725077	51725077	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001130063	exon2	c.C394T	p.R132C	.	.	.
RRP9	9136	broad.mit.edu	36	3	51947159	51947159	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004704	exon3	c.G272A	p.R91H	.	.	.
GRM7	2917	broad.mit.edu	36	3	7696970	7696970	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000844	exon9	c.G2686A	p.V896I	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78878710	78878710	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002941	exon5	c.C530T	p.S177L	.	.	.
SH2B3	10019	broad.mit.edu	36	12	110370420	110370420	+	Silent	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005475	exon8	c.G1659A	p.S553S	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122911523	122911523	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_207437	exon38	c.C6407T	p.T2136M	.	.	.
CCNT1	904	broad.mit.edu	36	12	47373482	47373482	+	Silent	SNP	A	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001240	exon9	c.T1782C	p.S594S	.	.	.
SLC4A8	9498	broad.mit.edu	36	12	50149834	50149834	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001039960	exon12	c.C1519T	p.R507C	.	.	.
KRT6A	3853	broad.mit.edu	36	12	51170081	51170081	+	Silent	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005554	exon6	c.C1116T	p.D372D	.	.	.
CHD4	1108	broad.mit.edu	36	12	6567369	6567369	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001273	exon24	c.G3473T	p.S1158I	.	.	.
PPP1R12A	4659	broad.mit.edu	36	12	78723669	78723669	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143886	exon14	c.C1573T	p.R525C	.	.	.
SCYL2	55681	broad.mit.edu	36	12	99235737	99235737	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017988	exon10	c.T1298A	p.M433K	.	.	.
POTEB	339010	broad.mit.edu	36	15	19336151	19336151	+	Silent	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207355	exon1	c.C150T	p.D50D	.	.	.
SNX22	79856	broad.mit.edu	36	15	62233642	62233642	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024798	exon7	c.C464T	p.S155L	.	.	.
ISLR2	57611	broad.mit.edu	36	15	72212916	72212916	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020851	exon3	c.C768T	p.F256F	.	.	.
ZNF710	374655	broad.mit.edu	36	15	88411938	88411938	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198526	exon2	c.C565G	p.P189A	.	.	.
NHEDC1	150159	broad.mit.edu	36	4	104087373	104087373	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139173	exon5	c.G405A	p.T135T	.	.	.
BBS12	166379	broad.mit.edu	36	4	123882963	123882963	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178007	exon3	c.A466C	p.S156R	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155377129	155377129	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017639	exon25	c.G6760C	p.E2254Q	.	.	.
WDR17	116966	broad.mit.edu	36	4	177337629	177337629	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_181265	exon29	c.G3757A	p.G1253R	.	.	.
KIAA1430	57587	broad.mit.edu	36	4	186349005	186349005	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020827	exon2	c.G340A	p.V114M	.	.	.
SLC30A9	10463	broad.mit.edu	36	4	41720129	41720129	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006345	exon6	c.G581A	p.R194H	.	.	.
POLR2B	5431	broad.mit.edu	36	4	57591233	57591233	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000938	exon24	c.G3346A	p.V1116I	.	.	.
GPRASP1	9737	broad.mit.edu	36	X	101798681	101798681	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001099411	exon3	c.T3184G	p.F1062V	.	.	.
IRS4	8471	broad.mit.edu	36	X	107866119	107866119	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003604	exon1	c.G112A	p.G38R	.	.	.
PAK3	5063	broad.mit.edu	36	X	110350308	110350308	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128166	exon16	c.G1612A	p.A538T	.	.	.
SLC6A14	11254	broad.mit.edu	36	X	115502850	115502850	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007231	exon13	c.C1662T	p.G554G	.	.	.
DCAF12L2	340578	broad.mit.edu	36	X	125127351	125127351	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001013628	exon1	c.G238A	p.V80I	.	.	.
GPR101	83550	broad.mit.edu	36	X	135940786	135940786	+	Silent	SNP	G	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_054021	exon1	c.C714A	p.V238V	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3248174	3248174	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015419	exon5	c.A5552G	p.E1851G	.	.	.
ZNF674	641339	broad.mit.edu	36	X	46244567	46244567	+	Silent	SNP	T	C	C	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190417	exon6	c.A1386G	p.K462K	.	.	.
TRO	7216	broad.mit.edu	36	X	54972506	54972506	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039705	exon12	c.C2624T	p.T875M	.	.	.
TBX22	50945	broad.mit.edu	36	X	79164559	79164559	+	Silent	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001109878	exon2	c.G135A	p.E45E	.	.	.
ZC3H8	84524	broad.mit.edu	36	2	112708204	112708204	+	Silent	SNP	T	C	C	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032494	exon5	c.A585G	p.Q195Q	.	.	.
TRIB2	28951	broad.mit.edu	36	2	12780968	12780968	+	Silent	SNP	T	C	C	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021643	exon2	c.T402C	p.Y134Y	.	.	.
UGGT1	56886	broad.mit.edu	36	2	128631338	128631338	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020120	exon22	c.A2303G	p.D768G	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140959546	140959546	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018557	exon59	c.G9261A	p.A3087A	.	.	.
SCN7A	6332	broad.mit.edu	36	2	167008268	167008268	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002976	exon13	c.A1791T	p.L597F	.	.	.
C2orf77	129881	broad.mit.edu	36	2	170210816	170210816	+	Silent	SNP	T	C	C	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085447	exon9	c.A1440G	p.E480E	.	.	.
TTN	7273	broad.mit.edu	36	2	179295090	179295090	+	Silent	SNP	G	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133378	exon75	c.C18813A	p.P6271P	.	.	.
ZC3H15	55854	broad.mit.edu	36	2	187081640	187081640	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018471	exon10	c.C1216G	p.L406V	.	.	.
OSR1	130497	broad.mit.edu	36	2	19416802	19416802	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145260	exon2	c.G246A	p.A82A	.	.	.
CTLA4	1493	broad.mit.edu	36	2	204444404	204444404	+	Silent	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005214	exon3	c.G516A	p.S172S	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206882770	206882770	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020923	exon5	c.C5273A	p.S1758Y	.	.	.
TMEM169	92691	broad.mit.edu	36	2	216672915	216672915	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142311	exon3	c.G299A	p.R100H	.	.	.
GMPPA	29926	broad.mit.edu	36	2	220074829	220074829	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_205847	exon5	c.A255C	p.E85D	.	.	.
KCNE4	23704	broad.mit.edu	36	2	223626187	223626187	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080671	exon2	c.C395T	p.P132L	.	.	.
SP140L	93349	broad.mit.edu	36	2	230973121	230973121	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138402	exon15	c.C1233T	p.D411D	.	.	.
TSPYL6	388951	broad.mit.edu	36	2	54335618	54335618	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001003937	exon1	c.G1175A	p.R392H	.	.	.
PLEK	5341	broad.mit.edu	36	2	68463189	68463189	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002664	exon4	c.T392C	p.L131S	.	.	.
SEMA4F	10505	broad.mit.edu	36	2	74756257	74756257	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004263	exon11	c.G1470T	p.M490I	.	.	.
C9orf72	203228	broad.mit.edu	36	9	27556891	27556891	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018325	exon2	c.G228C	p.E76D	.	.	.
SPAG8	26206	broad.mit.edu	36	9	35801508	35801509	+	Missense_Mutation	DNP	AG	GA	GA	novel		TCGA-AG-4007-01	TCGA-AG-4007-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172312	exon2	c.534_535TC	.	.	.	.
APBA1	320	broad.mit.edu	36	9	71237302	71237302	+	Silent	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163	exon12	c.C2412T	p.I804I	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79119391	79119391	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001018037	exon36	c.C4286T	p.A1429V	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41161628	41161628	+	Silent	SNP	T	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015058	exon34	c.A3993C	p.I1331I	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57105747	57105747	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040429	exon1	c.G1066A	p.V356M	.	.	.
SLITRK6	84189	broad.mit.edu	36	13	85267421	85267421	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032229	exon2	c.G1224T	p.M408I	.	.	.
GPC6	10082	broad.mit.edu	36	13	93853270	93853270	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005708	exon9	c.G1466A	p.S489N	.	.	.
SORCS1	114815	broad.mit.edu	36	10	108421114	108421114	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_052918	exon16	c.G2060A	p.G687E	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114910380	114910380	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001198526	exon12	c.C1262A	p.P421Q	.	.	.
CACNB2	783	broad.mit.edu	36	10	18843969	18843969	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_201572	exon7	c.G641A	p.R214Q	.	.	.
NRG3	10718	broad.mit.edu	36	10	84735000	84735000	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001165973	exon11	c.G1159T	p.E387X	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91464880	91464880	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_016195	exon8	c.C901T	p.R301C	.	.	.
LCOR	84458	broad.mit.edu	36	10	98705581	98705581	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032440	exon8	c.G1214T	p.R405M	.	.	.
ST8SIA4	7903	broad.mit.edu	36	5	100219709	100219709	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005668	exon4	c.G794A	p.R265K	.	.	.
APC	324	broad.mit.edu	36	5	112203097	112203097	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C3853T	p.Q1285X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.
APC	324	broad.mit.edu	36	5	112203325	112203325	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.G4081T	p.E1361X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.
PAIP2	51247	broad.mit.edu	36	5	138728208	138728208	+	Silent	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033112	exon3	c.G195A	p.L65L	.	.	.
PSD2	84249	broad.mit.edu	36	5	139199853	139199853	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032289	exon14	c.G2026A	p.E676K	.	.	.
PCDHB3	56132	broad.mit.edu	36	5	140462159	140462159	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018937	exon1	c.A1742C	p.E581A	.	.	.
PCDHB6	56130	broad.mit.edu	36	5	140512172	140512172	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018939	exon1	c.C2150A	p.A717E	.	.	.
PCDHGA11	56105	broad.mit.edu	36	5	140782953	140782953	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018914	exon1	c.G1975A	p.V659I	.	.	.
CCNJL	79616	broad.mit.edu	36	5	159615154	159615154	+	Silent	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024565	exon6	c.G867A	p.T289T	.	.	.
ADAMTS2	9509	broad.mit.edu	36	5	178518360	178518360	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021599	exon6	c.C1102T	p.R368W	.	.	.
ADCY2	108	broad.mit.edu	36	5	7855364	7855364	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020546	exon21	c.G2662A	p.V888I	.	.	.