Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
OR5B12	390191	hgsc.bcm.edu	36	11	57963372	57963373	+	Frame_Shift_Ins	INS	-	-	AAAGG	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004733	exon1	c.829_830insCCTTT	p.A277fs	.	.	.
KRT17	3872	hgsc.bcm.edu	36	17	37030790	37030791	+	In_Frame_Ins	INS	-	-	TCT	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_000422	exon5	c.914_915insAGA	p.R305delinsQS	.	.	.
SLC10A4	201780	hgsc.bcm.edu	36	4	48180875	48180876	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152679	exon1	c.540_541insA	p.G180fs	.	.	.
C7orf58	79974	hgsc.bcm.edu	36	7	120417098	120417098	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_024913	exon2	c.A187C	p.K63Q	.	.	.
KLF14	136259	hgsc.bcm.edu	36	7	130068577	130068577	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_138693	exon1	c.G824T	p.R275L	.	.	.
ZNF133	7692	hgsc.bcm.edu	36	20	18244626	18244626	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003434	exon7	c.T1128A	p.S376S	.	.	.
ZNF133	7692	hgsc.bcm.edu	36	20	18244629	18244629	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003434	exon7	c.G1131C	p.G377G	.	.	.
SALL4	57167	hgsc.bcm.edu	36	20	49840980	49840980	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020436	exon2	c.A1449G	p.V483V	.	.	.
LARGE	9215	hgsc.bcm.edu	36	22	32352287	32352287	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_133642	exon4	c.C432T	p.C144C	.	.	.
FAM83F	113828	hgsc.bcm.edu	36	22	38745270	38745270	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138435	exon2	c.T642G	p.T214T	.	.	.
NAGA	4668	hgsc.bcm.edu	36	22	40796239	40796239	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000262	exon1	c.G9T	p.L3L	.	.	.
C22orf9	23313	hgsc.bcm.edu	36	22	43980420	43980420	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_015264	exon3	c.G269T	p.R90L	.	.	.
CASP14	23581	hgsc.bcm.edu	36	19	15024075	15024075	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012114	exon2	c.C13T	p.R5W	.	.	.
BRD4	23476	hgsc.bcm.edu	36	19	15236454	15236454	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_014299	exon6	c.A973G	p.S325G	.	.	.
FAM129C	199786	hgsc.bcm.edu	36	19	17515358	17515358	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173544	exon13	c.C1565T	p.A522V	.	.	.
SIPA1L3	23094	hgsc.bcm.edu	36	19	43282550	43282550	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	A	G	A	Unknown	Valid	Germline	Phase_I	Capture	454			SOLID	NM_015073	exon5	c.G1774A	p.E592K	.	.	.
CLPTM1	1209	hgsc.bcm.edu	36	19	50182510	50182510	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001294	exon8	c.G1027T	p.D343Y	.	.	.
PURG	29942	hgsc.bcm.edu	36	8	31009166	31009166	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001015508	exon1	c.A675G	p.P225P	.	.	.
COL11A1	1301	hgsc.bcm.edu	36	1	103260908	103260908	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001854	exon8	c.A1223C	p.E408A	.	.	.
DDOST	1650	hgsc.bcm.edu	36	1	20853317	20853317	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005216	exon7	c.G831A	p.A277A	.	.	.
RPL11	6135	hgsc.bcm.edu	36	1	23895432	23895432	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000975	exon6	c.C519T	p.I173I	.	.	.
EFCAB2	84288	hgsc.bcm.edu	36	1	243289369	243289369	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001143943	exon3	c.G169T	p.D57Y	.	.	.
ZNF496	84838	hgsc.bcm.edu	36	1	245539718	245539718	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032752	exon7	c.C798T	p.A266A	.	.	.
CNKSR1	10256	hgsc.bcm.edu	36	1	26379845	26379845	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006314	exon3	c.G263A	p.G88E	.	.	.
PTPRU	10076	hgsc.bcm.edu	36	1	29514541	29514541	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005704	exon24	c.G3328A	p.V1110I	.	.	.
IQCC	55721	hgsc.bcm.edu	36	1	32445736	32445736	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160042	exon5	c.A1107G	p.S369S	.	.	.
LRRC40	55631	hgsc.bcm.edu	36	1	70386855	70386855	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017768	exon14	c.C1606T	p.Q536X	.	.	.
ABCA4	24	hgsc.bcm.edu	36	1	94249524	94249524	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000350	exon39	c.G5466A	p.L1822L	.	.	.
FCHSD2	9873	hgsc.bcm.edu	36	11	72231412	72231412	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014824	exon17	c.G1828C	p.G610R	.	.	.
ARHGEF17	9828	hgsc.bcm.edu	36	11	72754238	72754238	+	Silent	SNP	C	C	T	rs61749197	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014786	exon19	c.C5706T	p.P1902P	.	.	.
PPFIBP2	8495	hgsc.bcm.edu	36	11	7619393	7619393	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003621	exon16	c.C1483T	p.R495W	.	.	.
ATG2A	23130	hgsc.bcm.edu	36	11	64421784	64421785	+	Frame_Shift_Del	DEL	GG	GG	-	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	GG	GG	GG	GG	GG	GG	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_015104	exon36	c.5001_5002del	p.1667_1668del	.	.	.
NOS2	4843	hgsc.bcm.edu	36	17	23125560	23125560	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000625	exon12	c.C1326A	p.S442S	.	.	.
CDC27	996	hgsc.bcm.edu	36	17	42571209	42571209	+	Silent	SNP	A	A	G	rs62075659	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114091	exon13	c.T1617C	p.V539V	.	.	.
CDC27	996	hgsc.bcm.edu	36	17	42571215	42571215	+	Silent	SNP	A	A	G	rs62077260	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114091	exon13	c.T1611C	p.Y537Y	.	.	.
GGT6	124975	hgsc.bcm.edu	36	17	4408212	4408212	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001122890	exon4	c.T1329A	p.P443P	.	.	.
USP6	9098	hgsc.bcm.edu	36	17	4976948	4976948	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	C	C	C	G	Unknown	Valid	LOH	Phase_I	Capture	454			SOLID	NM_004505	exon5	c.C215G	p.T72R	.	.	.
KCNJ16	3773	hgsc.bcm.edu	36	17	65640741	65640741	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018658	exon5	c.G918A	p.W306X	.	.	.
QRICH2	84074	hgsc.bcm.edu	36	17	71800210	71800210	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032134	exon4	c.C1695A	p.V565V	.	.	.
BAIAP2	10458	hgsc.bcm.edu	36	17	76642076	76642076	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006340	exon2	c.A68G	p.Q23R	.	.	.
ODF4	146852	hgsc.bcm.edu	36	17	8189835	8189835	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153007	exon3	c.A714C	p.T238T	.	.	.
SIM2	6493	hgsc.bcm.edu	36	21	37014060	37014060	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_009586	exon4	c.C417T	p.V139V	.	.	.
MYST1	84148	hgsc.bcm.edu	36	16	31039064	31039064	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032188	exon2	c.T268C	p.Y90H	.	.	.
SEPT12	124404	hgsc.bcm.edu	36	16	4776037	4776037	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144605	exon3	c.A237T	p.P79P	.	.	.
AMFR	267	hgsc.bcm.edu	36	16	54955408	54955408	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144	exon13	c.C1710T	p.R570R	.	.	.
GAS8	2622	hgsc.bcm.edu	36	16	88625362	88625362	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001481	exon3	c.G245T	p.R82L	.	.	.
SLC2A2	6514	hgsc.bcm.edu	36	3	172205792	172205792	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000340	exon7	c.T939G	p.A313A	SLC2A2,central_nervous_system,brain,Substitution - Missense,-2	.	.
HTR3C	170572	hgsc.bcm.edu	36	3	185255329	185255329	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_130770	exon2	c.G194A	p.R65H	.	.	.
MST1R	4486	hgsc.bcm.edu	36	3	49908989	49908989	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002447	exon9	c.A2427T	p.A809A	.	.	.
RIMBP2	23504	hgsc.bcm.edu	36	12	129507025	129507025	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015347	exon4	c.C276A	p.F92L	.	.	.
SLCO1C1	53919	hgsc.bcm.edu	36	12	20781443	20781443	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017435	exon11	c.T1518C	p.C506C	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
KRT75	9119	hgsc.bcm.edu	36	12	51104644	51104644	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004693	exon9	c.G1580A	p.R527Q	.	.	.
ESPL1	9700	hgsc.bcm.edu	36	12	51969563	51969563	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012291	exon22	c.T5031C	p.F1677F	.	.	.
C15orf17	57184	hgsc.bcm.edu	36	15	72984563	72984563	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_020447	exon3	c.C365G	p.S122C	.	.	.
CENPE	1062	hgsc.bcm.edu	36	4	104263496	104263496	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001813	exon43	c.C7124T	p.A2375V	.	.	.
ANXA10	11199	hgsc.bcm.edu	36	4	169297251	169297251	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007193	exon3	c.G140A	p.R47H	.	.	.
DOCK11	139818	hgsc.bcm.edu	36	X	117623328	117623328	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144658	exon24	c.G2662A	p.V888I	.	.	.
SLITRK2	84631	hgsc.bcm.edu	36	X	144712211	144712211	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144006	exon3	c.G576A	p.R192R	.	.	.
XAGE3	170626	hgsc.bcm.edu	36	X	52908378	52908378	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133179	exon5	c.G330A	p.Q110Q	.	.	.
ATP7A	538	hgsc.bcm.edu	36	X	77171536	77171536	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000052	exon15	c.G3050C	p.G1017A	.	.	.
KLHL4	56062	hgsc.bcm.edu	36	X	86659605	86659605	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_057162	exon1	c.G53A	p.R18H	.	.	.
CCDC93	54520	hgsc.bcm.edu	36	2	118420857	118420857	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_019044	exon16	c.G1296C	p.K432N	.	.	.
MARCH7	64844	hgsc.bcm.edu	36	2	160307941	160307941	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022826	exon3	c.A277G	p.K93E	.	.	.
ECEL1	9427	hgsc.bcm.edu	36	2	233056074	233056074	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004826	exon9	c.G1566A	p.V522V	.	.	.
SLC5A6	8884	hgsc.bcm.edu	36	2	27277475	27277475	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021095	exon16	c.A1659G	p.R553R	.	.	.
B3GNT2	10678	hgsc.bcm.edu	36	2	62302927	62302927	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006577	exon2	c.T68A	p.F23Y	.	.	.
CYLC2	1539	hgsc.bcm.edu	36	9	104807755	104807755	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001340	exon5	c.A1021C	p.K341Q	.	.	.
RBM18	92400	hgsc.bcm.edu	36	9	124053986	124053986	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033117	exon3	c.G201A	p.Q67Q	.	.	.
SH2D3C	10044	hgsc.bcm.edu	36	9	129580692	129580692	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170600	exon1	c.C36T	p.F12F	.	.	.
TPM2	7169	hgsc.bcm.edu	36	9	35679790	35679790	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_213674	exon1	c.C25G	p.Q9E	.	.	.
AGTPBP1	23287	hgsc.bcm.edu	36	9	87437451	87437451	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015239	exon14	c.A1841T	p.H614L	.	.	.
FREM2	341640	hgsc.bcm.edu	36	13	38164024	38164024	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_207361	exon1	c.C4543T	p.R1515C	.	.	.
ARMC4	55130	hgsc.bcm.edu	36	10	28297859	28297859	+	Missense_Mutation	SNP	G	G	C	rs57067036	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018076	exon9	c.C1237G	p.R413G	.	.	.
PRKG1	5592	hgsc.bcm.edu	36	10	53712075	53712075	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006258	exon14	c.A1702G	p.T568A	.	.	.
BICC1	80114	hgsc.bcm.edu	36	10	60258621	60258621	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001080512	exon21	c.T2889A	p.Y963X	.	.	.
APC	324	hgsc.bcm.edu	36	5	112201499	112201499	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C2255A	p.S752X	.	.	.
APC	324	hgsc.bcm.edu	36	5	112202057	112202057	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.A2813G	p.Y938C	.	.	.
ZNF608	57507	hgsc.bcm.edu	36	5	124012377	124012377	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020747	exon4	c.C1599A	p.T533T	.	.	.
LARP1	23367	hgsc.bcm.edu	36	5	154161915	154161915	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015315	exon11	c.T1641G	p.T547T	.	.	.
DOCK2	1794	hgsc.bcm.edu	36	5	169078251	169078251	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004946	exon22	c.A2145G	p.T715T	.	.	.
MAP1B	4131	hgsc.bcm.edu	36	5	71531152	71531152	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005909	exon5	c.T6214C	p.S2072P	.	.	.
TNPO1	3842	hgsc.bcm.edu	36	5	72193421	72193421	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153188	exon5	c.G362A	p.G121E	.	.	.