Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error OR1F2P 26184 genome.wustl.edu 36 16 3205741 3205741 + RNA SNP C C T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 16 3205741 3205741 C T SNP OR1F2P NR_002169 human genbank 54_36p +1 provisional rna NULL NULL 1.000 - - - pseudogene CCDC27 148870 genome.wustl.edu 36 1 3669881 3669881 + Missense_Mutation SNP G G C novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 1 3669881 3669881 G C SNP CCDC27 NM_152492 human genbank 54_36p +1 validated missense c.1304 p.R435T 0.901 NULL NULL - no_errors WSCD1 23302 genome.wustl.edu 36 17 5964420 5964420 + Silent SNP C C T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 17 5964420 5964420 C T SNP WSCD1 NM_015253 human genbank 54_36p +1 validated silent c.1443 p.Y481 0.991 superfamily_SSF52540 HMMSmart_WSC,HMMPfam_WSC,superfamily_SSF52540 - no_errors LPAR5 57121 genome.wustl.edu 36 12 6600448 6600448 + Silent SNP G G A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 12 6600448 6600448 G A SNP LPAR5 NM_020400 human genbank 54_36p -1 reviewed silent c.228 p.P76 0.836 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors TP53 7157 genome.wustl.edu 36 17 7518284 7518284 + Missense_Mutation SNP G G A rs28934573 unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 17 7518284 7518284 G A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.722 p.S241F 1.000 HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53 HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain - no_errors LRRC8E 80131 genome.wustl.edu 36 19 7871234 7871234 + Silent SNP A G G novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 19 7871234 7871234 A G SNP LRRC8E NM_025061 human genbank 54_36p +1 validated silent c.1827 p.E609 0.992 superfamily_SSF52058 superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1 - no_errors CC2D2A 57545 genome.wustl.edu 36 4 15148684 15148684 + Missense_Mutation SNP C C T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 4 15148684 15148684 C T SNP CC2D2A NM_001080522 human genbank 54_36p +1 validated missense c.1829 p.P610L 0.000 NULL HMMSmart_C2 - no_errors PTPRO 5800 genome.wustl.edu 36 12 15546215 15546215 + Silent SNP C C A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 12 15546215 15546215 C A SNP PTPRO NM_030667 human genbank 54_36p +1 reviewed silent c.1056 p.P352 0.936 NULL superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1 - no_errors LGALS9 3965 genome.wustl.edu 36 17 22998444 22998444 + Silent SNP T T G novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 17 22998444 22998444 T G SNP LGALS9 NM_009587 human genbank 54_36p +1 reviewed silent c.780 p.S260 0.001 superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin - no_errors BLMH 642 genome.wustl.edu 36 17 25642554 25642554 + Missense_Mutation SNP C C A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 17 25642554 25642554 C A SNP BLMH NM_000386 human genbank 54_36p -1 reviewed missense c.112 p.D38Y 1.000 superfamily_Cysteine proteinases,HMMPfam_Peptidase_C1_2 superfamily_Cysteine proteinases,HMMPfam_Peptidase_C1_2,PatternScan_THIOL_PROTEASE_CYS - no_errors CDAN1 146059 genome.wustl.edu 36 15 40809057 40809057 + Splice_Site SNP C C T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 15 40809057 40809057 C T SNP CDAN1 NM_138477 human genbank 54_36p -1 validated splice_site c.2407+1 e17+1 1.000 - - - no_errors LRFN5 145581 genome.wustl.edu 36 14 41426022 41426022 + Silent SNP C C A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 14 41426022 41426022 C A SNP LRFN5 NM_152447 human genbank 54_36p +1 validated silent c.444 p.A148 0.999 superfamily_SSF52058,HMMPfam_LRR_1 HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_fn3,superfamily_FN_III-like - no_errors RSPH1 89765 genome.wustl.edu 36 21 42786181 42786181 + Nonsense_Mutation SNP G G C novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 21 42786181 42786181 G C SNP RSPH1 NM_080860 human genbank 54_36p -1 validated nonsense c.132 p.Y44* 0.852 superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698 - no_errors FAM75A6 0 genome.wustl.edu 36 9 43566811 43566811 + Silent SNP G G A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 9 43566811 43566811 G A SNP FAM75A6 ENST00000332857 human ensembl 54_36p -1 known silent c.1872 p.D624 0.000 NULL NULL - no_errors MDGA2 161357 genome.wustl.edu 36 14 46840420 46840420 + Missense_Mutation SNP G G A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 14 46840420 46840420 G A SNP MDGA2 ENST00000399232 human ensembl 54_36p -1 known missense c.157 p.R53W 1.000 superfamily_SSF48726,HMMSmart_IGc2 PatternScan_MAM_1,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_MAM,HMMPfam_MAM - no_errors CIC 23152 genome.wustl.edu 36 19 47490220 47490220 + Silent SNP C C T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 19 47490220 47490220 C T SNP CIC NM_015125 human genbank 54_36p +1 validated silent c.4251 p.R1417 1.000 NULL superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box - no_errors PSG5 5673 genome.wustl.edu 36 19 48371316 48371316 + Silent SNP C C T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 19 48371316 48371316 C T SNP PSG5 NM_002781 human genbank 54_36p -1 validated silent c.855 p.K285 0.004 superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2 - no_errors ESPL1 9700 genome.wustl.edu 36 12 51973452 51973452 + Missense_Mutation SNP G G A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 12 51973452 51973452 G A SNP ESPL1 NM_012291 human genbank 54_36p +1 validated missense c.6290 p.R2097H 1.000 NULL HMMPfam_Peptidase_C50 - no_errors PXDNL 137902 genome.wustl.edu 36 8 52488294 52488294 + Missense_Mutation SNP T T A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 8 52488294 52488294 T A SNP PXDNL NM_144651 human genbank 54_36p -1 validated missense c.1873 p.I625F 1.000 NULL superfamily_L domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1 - no_errors MYO1A 4640 genome.wustl.edu 36 12 55718593 55718593 + Missense_Mutation SNP G G A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 12 55718593 55718593 G A SNP MYO1A NM_005379 human genbank 54_36p -1 reviewed missense c.1630 p.R544W 0.136 HMMSmart_MYSc,superfamily_SSF52540,HMMPfam_Myosin_head HMMSmart_MYSc,superfamily_SSF52540,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_TH1 - no_errors CHMP2A 27243 genome.wustl.edu 36 19 63755354 63755354 + Missense_Mutation SNP G G T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 19 63755354 63755354 G T SNP CHMP2A NM_014453 human genbank 54_36p -1 validated missense c.359 p.P120H 1.000 HMMPfam_Snf7 HMMPfam_Snf7 - no_errors MIRN1269 0 genome.wustl.edu 36 4 66825172 66825172 + RNA SNP C C T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 4 66825172 66825172 C T SNP MIRN1269 ENST00000408636 human ensembl 54_36p +1 known rna NULL NULL 0.027 - - - no_errors IL23R 149233 genome.wustl.edu 36 1 67496900 67496900 + Missense_Mutation SNP C C T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 1 67496900 67496900 C T SNP IL23R NM_144701 human genbank 54_36p +1 reviewed missense c.1391 p.P464L 0.000 NULL superfamily_Fibronectin type III,HMMPfam_fn3 - no_errors SLC8A3 6547 genome.wustl.edu 36 14 69703841 69703841 + Missense_Mutation SNP C C T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 14 69703841 69703841 C T SNP SLC8A3 NM_183002 human genbank 54_36p -1 reviewed missense c.1052 p.R351H 0.997 NULL HMMPfam_Na_Ca_ex,HMMSmart_SM00237,HMMPfam_Calx-beta - no_errors TTYH2 94015 genome.wustl.edu 36 17 69745028 69745028 + Missense_Mutation SNP G G A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 17 69745028 69745028 G A SNP TTYH2 NM_032646 human genbank 54_36p +1 reviewed missense c.415 p.V139I 1.000 HMMPfam_Tweety HMMPfam_Tweety - no_errors C17orf28 283987 genome.wustl.edu 36 17 70461986 70461986 + Missense_Mutation SNP G G A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 17 70461986 70461986 G A SNP C17orf28 NM_030630 human genbank 54_36p -1 validated missense c.1706 p.T569M 0.995 HMMPfam_Hid1 HMMPfam_Hid1 - no_errors MSH4 4438 genome.wustl.edu 36 1 76048984 76048984 + Silent SNP T T G novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 1 76048984 76048984 T G SNP MSH4 NM_002440 human genbank 54_36p +1 validated silent c.603 p.L201 0.945 superfamily_DNA_mismatch_repair_MutS_connt,HMMPfam_MutS_II superfamily_DNA_mismatch_repair_MutS_connt,HMMPfam_MutS_II,HMMPfam_MutS_III,superfamily_DNA_repair_MutS_domIII,HMMSmart_MUTSd,HMMPfam_MutS_IV,HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2 - no_errors B3GNTL1 146712 genome.wustl.edu 36 17 78516861 78516861 + Silent SNP C C G novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 17 78516861 78516861 C G SNP B3GNTL1 NM_001009905 human genbank 54_36p -1 validated silent c.555 p.S185 0.042 superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2 superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2 - no_errors CD36 948 genome.wustl.edu 36 7 80123918 80123918 + Missense_Mutation SNP A A T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 7 80123918 80123918 A T SNP CD36 NM_000072 human genbank 54_36p +1 reviewed missense c.247 p.I83F 0.617 HMMPfam_CD36 HMMPfam_CD36 - no_errors GRID1 2894 genome.wustl.edu 36 10 87618891 87618891 + Missense_Mutation SNP A A T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 10 87618891 87618891 A T SNP GRID1 NM_017551 human genbank 54_36p -1 reviewed missense c.807 p.D269E 1.000 superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,PatternScan_ALDEHYDE_DEHYDR_GLU - no_errors FAM22D 728130 genome.wustl.edu 36 10 89110515 89110515 + Missense_Mutation SNP C C A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 10 89110515 89110515 C A SNP FAM22D NM_001009610 human genbank 54_36p +1 predicted missense c.464 p.T155N 0.340 NULL NULL - no_errors TC2N 123036 genome.wustl.edu 36 14 91323640 91323640 + Missense_Mutation SNP G G A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 14 91323640 91323640 G A SNP TC2N NM_152332 human genbank 54_36p -1 validated missense c.1132 p.L378F 1.000 superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2 superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2 - no_errors ENSG00000214330 0 genome.wustl.edu 36 2 91395424 91395424 + Missense_Mutation SNP A A T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 2 91395424 91395424 A T SNP ENSG00000214330 ENST00000398126 human ensembl 54_36p +1 known missense c.482 p.Q161L 0.976 NULL HMMPfam_ABC_tran,superfamily_SSF52540 - no_start_codon ATG2B 55102 genome.wustl.edu 36 14 95865646 95865646 + Silent SNP G G A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 14 95865646 95865646 G A SNP ATG2B NM_018036 human genbank 54_36p -1 validated silent c.1809 p.S603 0.941 NULL HMMPfam_ATG_C - no_errors EPHA6 285220 genome.wustl.edu 36 3 98188958 98188958 + Missense_Mutation SNP G G C novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 3 98188958 98188958 G C SNP EPHA6 NM_001080448 human genbank 54_36p +1 provisional missense c.545 p.R182P 1.000 superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615 superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,superfamily_Growth factor receptor domain,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1 - no_errors PPRC1 23082 genome.wustl.edu 36 10 103896938 103896938 + Missense_Mutation SNP G G A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 10 103896938 103896938 G A SNP PPRC1 NM_015062 human genbank 54_36p +1 reviewed missense c.4199 p.R1400Q 0.267 NULL superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 - no_errors IGHM 0 genome.wustl.edu 36 14 105279456 105279456 + Missense_Mutation SNP G G A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 14 105279456 105279456 G A SNP IGHM ENST00000390548 human ensembl 54_36p -1 known missense c.488 p.T163M 0.000 superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407 superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region SLC25A43 203427 genome.wustl.edu 36 X 118397724 118397724 + Missense_Mutation SNP G G A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 X 118397724 118397724 G A SNP SLC25A43 ENST00000371617 human ensembl 54_36p +1 known missense c.22 p.V8I 0.895 NULL superfamily_Nucleic_acid_OB,HMMPfam_Ribosomal_S17 - no_errors GLT1D1 144423 genome.wustl.edu 36 12 128033483 128033483 + Silent SNP C C T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 12 128033483 128033483 C T SNP GLT1D1 NM_144669 human genbank 54_36p +1 provisional silent c.696 p.I232 0.006 superfamily_SSF53756,HMMPfam_Glycos_transf_1 superfamily_SSF53756,HMMPfam_Glycos_transf_1 - no_errors ZER1 10444 genome.wustl.edu 36 9 130553352 130553352 + Missense_Mutation SNP T T G novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 9 130553352 130553352 T G SNP ZER1 NM_006336 human genbank 54_36p -1 provisional missense c.1055 p.N352T 0.997 superfamily_ARM-type_fold superfamily_SSF52047,superfamily_ARM-type_fold - no_errors PCDHB4 56131 genome.wustl.edu 36 5 140482875 140482875 + Missense_Mutation SNP G G A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 5 140482875 140482875 G A SNP PCDHB4 NM_018938 human genbank 54_36p +1 reviewed missense c.1111 p.D371N 0.987 superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA - no_errors LYPD6B 130576 genome.wustl.edu 36 2 149770166 149770166 + Splice_Site SNP T T G novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 2 149770166 149770166 T G SNP LYPD6B NM_177964 human genbank 54_36p +1 provisional splice_site c.229+2 e3+2 1.000 - - - no_errors GABRE 2564 genome.wustl.edu 36 X 150874946 150874946 + Missense_Mutation SNP C C T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 X 150874946 150874946 C T SNP GABRE NM_004961 human genbank 54_36p -1 reviewed missense c.827 p.R276Q 0.507 superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb - no_errors SLC22A3 6581 genome.wustl.edu 36 6 160749877 160749877 + Missense_Mutation SNP T T C novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 6 160749877 160749877 T C SNP SLC22A3 NM_021977 human genbank 54_36p +1 reviewed missense c.791 p.I264T 0.996 superfamily_MFS general substrate transporter,HMMPfam_MFS_1 superfamily_MFS general substrate transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_1 - no_errors FAP 2191 genome.wustl.edu 36 2 162807680 162807680 + Silent SNP G G A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 2 162807680 162807680 G A SNP FAP NM_004460 human genbank 54_36p -1 reviewed silent c.75 p.V25 1.000 NULL superfamily_SSF82171,HMMPfam_DPPIV_N,superfamily_SSF53474,HMMPfam_Peptidase_S9,PatternScan_PRO_ENDOPEP_SER - no_errors BCHE 590 genome.wustl.edu 36 3 167030703 167030703 + Silent SNP C C A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 3 167030703 167030703 C A SNP BCHE NM_000055 human genbank 54_36p -1 reviewed silent c.813 p.T271 0.000 HMMPfam_COesterase,superfamily_SSF53474 HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1,HMMPfam_AChE_tetra - no_errors NUP35 129401 genome.wustl.edu 36 2 183732462 183732462 + Missense_Mutation SNP G G A novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 2 183732462 183732462 G A SNP NUP35 NM_138285 human genbank 54_36p +1 reviewed missense c.740 p.S247N 1.000 HMMPfam_MPPN HMMPfam_MPPN - no_errors MUC4 4585 genome.wustl.edu 36 3 196992007 196992007 + Missense_Mutation SNP G G C novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 3 196992007 196992007 G C SNP MUC4 ENST00000405167 human ensembl 54_36p -1 known missense c.10839 p.H3613Q 0.042 NULL HMMSmart_SM00539,HMMPfam_NIDO,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00723,HMMPfam_AMOP,HMMSmart_SM00216,HMMPfam_VWD,PatternScan_EGF_1,HMMSmart_SM00181,superfamily_EGF/Laminin - no_errors NMUR1 10316 genome.wustl.edu 36 2 232101369 232101369 + Silent SNP G G T novel unknown TCGA-61-2612-01A-01W-1092-09 TCGA-61-2612-11A-01W-1092-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 587b8017-fec1-437a-a224-b6abe77ba49e 36d4b692-eba6-448b-8e4a-bd3c117b4770 2 232101369 232101369 G T SNP NMUR1 NM_006056 human genbank 54_36p -1 validated silent c.607 p.R203 0.000 superfamily_SSF81321,HMMPfam_7tm_1 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors