Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID HMCN1 83872 broad.mit.edu 36 1 184326562 184326562 + Silent SNP T T C novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 TP53BP2 7159 broad.mit.edu 36 1 222052709 222052709 + Silent SNP G G A novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 VN1R5 317705 broad.mit.edu 36 1 245486694 245486694 + Missense_Mutation SNP C C T novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 NUDT5 11164 broad.mit.edu 36 10 12252907 12252907 + Missense_Mutation SNP C C A novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 RUFY2 55680 broad.mit.edu 36 10 69775776 69775776 + Missense_Mutation SNP C C G novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 CNTN1 1272 broad.mit.edu 36 12 39623793 39623793 + Missense_Mutation SNP G G C novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 SILV 6490 broad.mit.edu 36 12 54646039 54646039 + Missense_Mutation SNP G G C novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 PEBP1 5037 broad.mit.edu 36 12 117060263 117060263 + Missense_Mutation SNP C C G novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 ATP12A 479 broad.mit.edu 36 13 24162510 24162510 + Missense_Mutation SNP C C A novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 DDHD1 80821 broad.mit.edu 36 14 52640269 52640269 + Silent SNP C C T novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 KIAA1409 57578 broad.mit.edu 36 14 93148948 93148948 + Silent SNP C C T novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 TP53 7157 broad.mit.edu 36 17 7519131 7519131 + Missense_Mutation SNP C C T rs28934578 unknown TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 TMEM38A 79041 broad.mit.edu 36 19 16651828 16651828 + Missense_Mutation SNP C C T novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 RASGRP3 25780 broad.mit.edu 36 2 33622158 33622158 + Missense_Mutation SNP T T C novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 ANKZF1 55139 broad.mit.edu 36 2 219806811 219806811 + Missense_Mutation SNP G G T novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 MYH7B 57644 broad.mit.edu 36 20 33032158 33032158 + Missense_Mutation SNP A A G novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 TH1L 51497 broad.mit.edu 36 20 56999478 56999478 + Missense_Mutation SNP G G A novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 SLC17A9 63910 broad.mit.edu 36 20 61067431 61067431 + Missense_Mutation SNP G G A novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 GTF2E1 2960 broad.mit.edu 36 3 121972336 121972336 + Missense_Mutation SNP C C T novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 PDGFRA 5156 broad.mit.edu 36 4 54839404 54839404 + Silent SNP C C A novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 SCLT1 132320 broad.mit.edu 36 4 130140282 130140282 + Missense_Mutation SNP G G C novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 FHL5 9457 broad.mit.edu 36 6 97158346 97158346 + Missense_Mutation SNP A A C novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 TAAR2 9287 broad.mit.edu 36 6 132980498 132980498 + Silent SNP G G A novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546 BCORL1 63035 broad.mit.edu 36 X 128984616 128984616 + Missense_Mutation SNP G G A novel none TCGA-61-2003-01A-01W-0722-08 TCGA-61-2003-10A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 19406227-9802-4b5a-90d1-20b8c475ad53 558ebd94-a734-4314-b9e9-e8bd85991546