Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error MT-ND5 4540 genome.wustl.edu 36 MT 13650 13650 + Missense_Mutation SNP C C T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 MT 13650 13650 C T SNP MT-ND5 ENST00000361567 human ensembl 54_36p +1 known missense c.1313 p.P438L NULL HMMPfam_NADH5_C HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C - no_errors MFSD7 84179 genome.wustl.edu 36 4 668391 668391 + Missense_Mutation SNP G G C novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 4 668391 668391 G C SNP MFSD7 ENST00000404286 human ensembl 54_36p -1 known missense c.724 p.Q242E 0.380 superfamily_MFS general substrate transporter,HMMPfam_MFS_1 superfamily_MFS general substrate transporter,HMMPfam_MFS_1 - no_errors DCHS1 8642 genome.wustl.edu 36 11 6619116 6619116 + Missense_Mutation SNP C C T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 11 6619116 6619116 C T SNP DCHS1 NM_003737 human genbank 54_36p -1 reviewed missense c.305 p.R102H 0.993 superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1 - no_errors TP53 7157 genome.wustl.edu 36 17 7519242 7519242 + Missense_Mutation SNP G G A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 17 7519242 7519242 G A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.413 p.A138V 1.000 HMMPfam_P53,superfamily_p53-like transcription factors HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain - no_errors PLCB4 5332 genome.wustl.edu 36 20 9324218 9324218 + Missense_Mutation SNP C C T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 20 9324218 9324218 C T SNP PLCB4 NM_000933 human genbank 54_36p +1 reviewed missense c.1463 p.S488F 0.981 superfamily_PLC-like_Pdiesterase_TIM-brl superfamily_SSF50729,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_DUF1154 - no_errors IL17RE 132014 genome.wustl.edu 36 3 9924955 9924955 + Silent SNP G G T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 3 9924955 9924955 G T SNP IL17RE NM_153480 human genbank 54_36p +1 reviewed silent c.699 p.L233 0.975 NULL HMMPfam_SEFIR - no_errors DLC1 10395 genome.wustl.edu 36 8 13001645 13001645 + Missense_Mutation SNP C C T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 8 13001645 13001645 C T SNP DLC1 NM_182643 human genbank 54_36p -1 reviewed missense c.2572 p.D858N 0.001 NULL HMMPfam_SAM_2,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234 - no_errors GPSN2 9524 genome.wustl.edu 36 19 14535819 14535819 + Missense_Mutation SNP C C T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 19 14535819 14535819 C T SNP GPSN2 NM_138501 human genbank 54_36p +1 validated missense c.293 p.P98L 1.000 NULL HMMPfam_Steroid_dh - no_errors KCNJ12 3768 genome.wustl.edu 36 17 21259995 21259995 + Missense_Mutation SNP G G T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 17 21259995 21259995 G T SNP KCNJ12 NM_021012 human genbank 54_36p +1 validated missense c.748 p.D250Y 1.000 HMMPfam_IRK,superfamily_Ig_E-set HMMPfam_IRK_N,superfamily_SSF81324,HMMPfam_IRK,superfamily_Ig_E-set - no_errors TNRC6A 27327 genome.wustl.edu 36 16 24725061 24725061 + Nonsense_Mutation SNP C C T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 16 24725061 24725061 C T SNP TNRC6A NM_014494 human genbank 54_36p +1 reviewed nonsense c.4285 p.Q1429* 1.000 NULL PatternScan_TUBULIN_B_AUTOREG,HMMPfam_Ago_hook,superfamily_RNA-binding domain RBD - no_errors NLP 22981 genome.wustl.edu 36 20 25404923 25404923 + Missense_Mutation SNP C C T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 20 25404923 25404923 C T SNP NLP NM_025176 human genbank 54_36p -1 validated missense c.3004 p.E1002K 0.000 NULL superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1 - no_errors NEK10 152110 genome.wustl.edu 36 3 27191281 27191281 + Silent SNP G G A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 3 27191281 27191281 G A SNP NEK10 ENST00000396636 human ensembl 54_36p -1 known silent c.744 p.A248 1.000 NULL HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR - no_errors LTA 4049 genome.wustl.edu 36 6 31649116 31649116 + Missense_Mutation SNP C C A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 6 31649116 31649116 C A SNP LTA NM_000595 human genbank 54_36p +1 reviewed missense c.285 p.S95R 0.999 superfamily_TNF-like,HMMSmart_SM00207,HMMPfam_TNF superfamily_TNF-like,HMMSmart_SM00207,HMMPfam_TNF,PatternScan_TNF_1 - no_errors VPS52 6293 genome.wustl.edu 36 6 33345999 33345999 + Nonsense_Mutation SNP C C A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 6 33345999 33345999 C A SNP VPS52 NM_022553 human genbank 54_36p -1 reviewed nonsense c.130 p.E44* 1.000 NULL HMMPfam_Vps52 - no_errors UNC13B 10497 genome.wustl.edu 36 9 35367622 35367622 + Silent SNP G G A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 9 35367622 35367622 G A SNP UNC13B NM_006377 human genbank 54_36p +1 reviewed silent c.1746 p.Q582 1.000 superfamily_C2_CaLB HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD - no_errors KDELR3 11015 genome.wustl.edu 36 22 37207258 37207258 + Silent SNP T T A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 22 37207258 37207258 T A SNP KDELR3 NM_016657 human genbank 54_36p +1 reviewed silent c.447 p.T149 0.994 HMMPfam_ER_lumen_recept HMMPfam_ER_lumen_recept,PatternScan_ER_LUMEN_RECEPTOR_1,PatternScan_ER_LUMEN_RECEPTOR_2 - no_errors EFTUD2 9343 genome.wustl.edu 36 17 40286431 40286431 + Missense_Mutation SNP C C A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 17 40286431 40286431 C A SNP EFTUD2 NM_004247 human genbank 54_36p -1 validated missense c.2446 p.V816F 1.000 superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_EFG_IV PatternScan_EFACTOR_GTP,superfamily_SSF52540,HMMPfam_GTP_EFTU,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,superfamily_EFG_III_V,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_EFG_IV,HMMPfam_EFG_C - no_errors LSR 51599 genome.wustl.edu 36 19 40449115 40449115 + Silent SNP C C T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 19 40449115 40449115 C T SNP LSR NM_205834 human genbank 54_36p +1 validated silent c.936 p.G312 0.993 PatternScan_ADH_SHORT superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_LSR,PatternScan_ADH_SHORT - no_errors CAPN3 825 genome.wustl.edu 36 15 40468464 40468464 + Missense_Mutation SNP G G A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 15 40468464 40468464 G A SNP CAPN3 NM_000070 human genbank 54_36p +1 reviewed missense c.679 p.A227T 1.000 superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2 superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III),superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1 - no_errors LOXHD1 125336 genome.wustl.edu 36 18 42311671 42311671 + Missense_Mutation SNP C T T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 18 42311671 42311671 C T SNP LOXHD1 ENST00000398722 human ensembl 54_36p -1 known missense c.5750 p.R1917H 1.000 superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308 - no_errors CUL7 9820 genome.wustl.edu 36 6 43115993 43115993 + Silent SNP C C T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 6 43115993 43115993 C T SNP CUL7 NM_014780 human genbank 54_36p -1 validated silent c.4173 p.V1391 0.968 HMMPfam_Cullin,superfamily_Cullin_homology PatternScan_CULLIN_1,superfamily_Gal_bind_like,HMMPfam_APC10,HMMPfam_Cullin,superfamily_Cullin_homology,superfamily_SSF46785 - no_errors TNNC2 7125 genome.wustl.edu 36 20 43885406 43885406 + Missense_Mutation SNP C C A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 20 43885406 43885406 C A SNP TNNC2 NM_003279 human genbank 54_36p -1 reviewed missense c.471 p.E157D 1.000 HMMSmart_SM00054,HMMPfam_efhand superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1 - no_errors LOC100133197 0 genome.wustl.edu 36 21 43981726 43981726 + Silent SNP G G T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 21 43981726 43981726 G T SNP LOC100133197 XM_001722695 human genbank 54_36p +1 model silent c.270 p.V90 0.002 NULL NULL - no_errors COL6A2 1292 genome.wustl.edu 36 21 46373641 46373641 + Silent SNP A A T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 21 46373641 46373641 A T SNP COL6A2 NM_058174 human genbank 54_36p +1 reviewed silent c.2565 p.L855 0.998 NULL superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_Collagen - no_errors CEACAM5 1048 genome.wustl.edu 36 19 46914032 46914032 + Missense_Mutation SNP G G T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 19 46914032 46914032 G T SNP CEACAM5 NM_004363 human genbank 54_36p +1 validated missense c.1383 p.E461D 0.355 superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig - no_errors NEDD4 4734 genome.wustl.edu 36 15 53918093 53918093 + Missense_Mutation SNP T T C novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 15 53918093 53918093 T C SNP NEDD4 NM_198400 human genbank 54_36p -1 validated missense c.3074 p.D1025G 1.000 superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT - no_errors GPR114 221188 genome.wustl.edu 36 16 56158923 56158923 + Missense_Mutation SNP C C G novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 16 56158923 56158923 C G SNP GPR114 NM_153837 human genbank 54_36p +1 provisional missense c.740 p.P247R 0.699 HMMPfam_7tm_2 HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2 - no_errors OR9Q1 219956 genome.wustl.edu 36 11 57703726 57703726 + Silent SNP C C T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 11 57703726 57703726 C T SNP OR9Q1 NM_001005212 human genbank 54_36p +1 provisional silent c.234 p.V78 0.004 superfamily_SSF81321,HMMPfam_7tm_1 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors MS4A4E 643680 genome.wustl.edu 36 11 59754088 59754088 + Missense_Mutation SNP C C A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 11 59754088 59754088 C A SNP MS4A4E ENST00000398984 human ensembl 54_36p -1 known missense c.11 p.G4V 0.004 NULL HMMPfam_CD20 - no_start_codon ZNF264 9422 genome.wustl.edu 36 19 62397165 62397165 + Silent SNP G G C novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 19 62397165 62397165 G C SNP ZNF264 NM_003417 human genbank 54_36p +1 validated silent c.144 p.G48 0.158 superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1 - no_errors PMS2L5 5383 genome.wustl.edu 36 7 73944898 73944898 + Missense_Mutation SNP G G C novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 7 73944898 73944898 G C SNP PMS2L5 ENST00000337023 human ensembl 54_36p +1 known missense c.65 p.W22S 0.000 NULL NULL - no_start_codon MDH2 4191 genome.wustl.edu 36 7 75524743 75524743 + Missense_Mutation SNP G G C novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 7 75524743 75524743 G C SNP MDH2 NM_005918 human genbank 54_36p +1 reviewed missense c.315 p.K105N 0.992 superfamily_NAD(P)-bd,HMMPfam_Ldh_1_N superfamily_NAD(P)-bd,HMMPfam_Ldh_1_N,PatternScan_MDH,superfamily_Lactate_DH/Glyco_hydro_4_C,HMMPfam_Ldh_1_C - no_errors AK5 26289 genome.wustl.edu 36 1 77774211 77774211 + Missense_Mutation SNP T T C novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 1 77774211 77774211 T C SNP AK5 NM_174858 human genbank 54_36p +1 reviewed missense c.1520 p.V507A 0.000 superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ADK HMMPfam_Dpy-30,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ADK,PatternScan_ADENYLATE_KINASE - no_errors MVD 4597 genome.wustl.edu 36 16 87249601 87249601 + Silent SNP G G A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 16 87249601 87249601 G A SNP MVD NM_002461 human genbank 54_36p -1 reviewed silent c.642 p.G214 0.996 superfamily_SSF55060 superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_GHMP_kinases_N,superfamily_SSF55060,HMMPfam_GHMP_kinases_C - no_errors GNG11 2791 genome.wustl.edu 36 7 93393392 93393392 + Silent SNP G G A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 7 93393392 93393392 G A SNP GNG11 NM_004126 human genbank 54_36p +1 reviewed silent c.150 p.E50 0.998 superfamily_Transducin (heterotrimeric G protein) gamma chain,HMMPfam_G-gamma,HMMSmart_SM00224 superfamily_Transducin (heterotrimeric G protein) gamma chain,HMMPfam_G-gamma,HMMSmart_SM00224 - no_errors GSC 145258 genome.wustl.edu 36 14 94305998 94305998 + Silent SNP C T T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 14 94305998 94305998 C T SNP GSC NM_173849 human genbank 54_36p -1 reviewed silent c.108 p.P36 1.000 NULL superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1 - no_errors ABCD3 5825 genome.wustl.edu 36 1 94718638 94718638 + Missense_Mutation SNP G G A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 1 94718638 94718638 G A SNP ABCD3 NM_002858 human genbank 54_36p +1 reviewed missense c.715 p.V239I 0.982 superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane_2 superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1 - no_errors ARMCX6 54470 genome.wustl.edu 36 X 100757832 100757832 + Silent SNP C C G novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 X 100757832 100757832 C G SNP ARMCX6 NM_001009584 human genbank 54_36p -1 validated silent c.435 p.A145 0.002 HMMPfam_DUF634 HMMPfam_DUF634 - no_errors HBXIP 10542 genome.wustl.edu 36 1 110751805 110751805 + Silent SNP G G C novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 1 110751805 110751805 G C SNP HBXIP NM_006402 human genbank 54_36p -1 reviewed silent c.207 p.A69 0.000 NULL NULL - no_errors WDR52 55779 genome.wustl.edu 36 3 114610787 114610787 + Missense_Mutation SNP T T C novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 3 114610787 114610787 T C SNP WDR52 NM_018338 human genbank 54_36p -1 provisional missense c.746 p.N249S 0.145 superfamily_WD40_like,HMMSmart_WD40 superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1 - no_errors NRAP 4892 genome.wustl.edu 36 10 115338764 115338764 + Missense_Mutation SNP T T A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 10 115338764 115338764 T A SNP NRAP NM_198060 human genbank 54_36p -1 validated missense c.5153 p.E1718V 1.000 NULL HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,HMMSmart_SM00227,HMMPfam_Nebulin - no_errors TMEM155 132332 genome.wustl.edu 36 4 122901058 122901058 + Silent SNP G G A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 4 122901058 122901058 G A SNP TMEM155 NM_152399 human genbank 54_36p -1 validated silent c.234 p.S78 0.001 NULL NULL - no_errors PIK3R4 30849 genome.wustl.edu 36 3 131880999 131880999 + Missense_Mutation SNP T T G novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 3 131880999 131880999 T G SNP PIK3R4 NM_014602 human genbank 54_36p -1 validated missense c.3927 p.K1309N 0.971 superfamily_WD40_like PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,PatternScan_PROTEIN_KINASE_ST,superfamily_ARM-type_fold,HMMPfam_HEAT,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1 - no_errors KCNQ3 3786 genome.wustl.edu 36 8 133213666 133213666 + Silent SNP G G T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 8 133213666 133213666 G T SNP KCNQ3 NM_004519 human genbank 54_36p -1 reviewed silent c.1827 p.S609 0.999 HMMPfam_KCNQ_channel superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel - no_errors YSK4 80122 genome.wustl.edu 36 2 135462112 135462112 + Missense_Mutation SNP G G A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 2 135462112 135462112 G A SNP YSK4 NM_025052 human genbank 54_36p -1 validated missense c.800 p.A267V 0.009 NULL superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST - no_errors SLC45A4 57210 genome.wustl.edu 36 8 142299101 142299101 + Missense_Mutation SNP A A G novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 8 142299101 142299101 A G SNP SLC45A4 NM_001080431 human genbank 54_36p -1 provisional missense c.287 p.L96P 1.000 HMMPfam_MFS_1,superfamily_MFS general substrate transporter HMMPfam_MFS_1,superfamily_MFS general substrate transporter - no_errors SLC9A9 285195 genome.wustl.edu 36 3 144695252 144695252 + Silent SNP G G A novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 3 144695252 144695252 G A SNP SLC9A9 NM_173653 human genbank 54_36p -1 validated silent c.1248 p.S416 1.000 HMMPfam_Na_H_Exchanger HMMPfam_Na_H_Exchanger - no_errors GABRA1 2554 genome.wustl.edu 36 5 161235203 161235203 + Missense_Mutation SNP C C G novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 5 161235203 161235203 C G SNP GABRA1 NM_000806 human genbank 54_36p +1 reviewed missense c.536 p.A179G 1.000 superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb - no_errors ZFP42 132625 genome.wustl.edu 36 4 189161553 189161553 + Missense_Mutation SNP A A T novel unknown TCGA-36-2537-01A-01D-1526-09 TCGA-36-2537-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx dabd603f-bcd1-4976-a833-eec6a04af2ca 31ced69f-393b-451f-b853-95f7316fbbc7 4 189161553 189161553 A T SNP ZFP42 NM_174900 human genbank 54_36p +1 validated missense c.598 p.R200W 0.998 superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1 superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2 - no_errors