Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID CYP2A7 1549 hgsc.bcm.edu 36 19 46078260 46078260 + Missense_Mutation SNP A A C rs56081734 TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca IRAK2 3656 hgsc.bcm.edu 36 3 10258843 10258843 + Silent SNP G G A novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca PGAP1 80055 hgsc.bcm.edu 36 2 197417024 197417025 + Frame_Shift_Ins INS - - TA novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 - - . . . . Unknown Untested Somatic Phase_III WXS none SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca PNPLA5 150379 hgsc.bcm.edu 36 22 42617026 42617027 + Frame_Shift_Ins INS - - G novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 - - . . . . Unknown Untested Somatic Phase_III WXS none SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca RNF10 9921 hgsc.bcm.edu 36 12 119489034 119489034 + Missense_Mutation SNP G G A novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca TP53 7157 hgsc.bcm.edu 36 17 7518263 7518264 + Frame_Shift_Ins INS - - G novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 - - . . . . Unknown Untested Somatic Phase_III WXS none SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca ACE2 59272 hgsc.bcm.edu 36 X 15495857 15495857 + Missense_Mutation SNP T T A novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca AMOT 154796 hgsc.bcm.edu 36 X 111908519 111908519 + Missense_Mutation SNP C C G novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca AOX1 316 hgsc.bcm.edu 36 2 201215769 201215769 + Missense_Mutation SNP G G T novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca APBB3 10307 hgsc.bcm.edu 36 5 139921934 139921934 + Silent SNP G G A novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca BST2 684 hgsc.bcm.edu 36 19 17377374 17377374 + Missense_Mutation SNP G G A novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca CCDC84 338657 hgsc.bcm.edu 36 11 118391303 118391303 + Silent SNP A A T novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca DUOX1 53905 hgsc.bcm.edu 36 15 43221589 43221589 + Silent SNP T T C novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca FAM83B 222584 hgsc.bcm.edu 36 6 54843423 54843423 + Silent SNP G G A novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca FBLN7 129804 hgsc.bcm.edu 36 2 112661454 112661454 + Missense_Mutation SNP C C T novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca GP2 2813 hgsc.bcm.edu 36 16 20243031 20243031 + Missense_Mutation SNP C C G novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca HSPG2 3339 hgsc.bcm.edu 36 1 22086561 22086561 + Silent SNP G G C novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca PKD2L1 9033 hgsc.bcm.edu 36 10 102046802 102046802 + Silent SNP C C T novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca PSD3 23362 hgsc.bcm.edu 36 8 18458108 18458108 + Missense_Mutation SNP T T A novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca PTPDC1 138639 hgsc.bcm.edu 36 9 95903839 95903839 + Silent SNP T T A novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca RANBP3L 202151 hgsc.bcm.edu 36 5 36337238 36337238 + Missense_Mutation SNP G G A novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca RP1 6101 hgsc.bcm.edu 36 8 55703740 55703740 + Missense_Mutation SNP G G A novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca SLC27A2 11001 hgsc.bcm.edu 36 15 48277034 48277034 + Missense_Mutation SNP A A G novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca SMPDL3B 27293 hgsc.bcm.edu 36 1 28144398 28144398 + Missense_Mutation SNP G G A novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca ZNF41 7592 hgsc.bcm.edu 36 X 47193167 47193167 + Missense_Mutation SNP C C T novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca ALDH1L1 10840 hgsc.bcm.edu 36 3 127354975 127354975 + Splice_Site SNP A A T novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 A A A T A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca CSMD3 114788 hgsc.bcm.edu 36 8 113335707 113335707 + Missense_Mutation SNP T T G novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 T T T G T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca MYH1 4619 hgsc.bcm.edu 36 17 10339305 10339305 + Missense_Mutation SNP G G T novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca PTPRR 5801 hgsc.bcm.edu 36 12 69341132 69341132 + Missense_Mutation SNP T T C novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 T T T C T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca SAMD9 54809 hgsc.bcm.edu 36 7 92571191 92571191 + Missense_Mutation SNP T T G novel TCGA-36-1570-01A-01W-0615-10 TCGA-36-1570-10A-01W-0615-10 T T T G T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 2cfd1fbf-a67e-4509-b2aa-728c1640290d 4244107e-0a86-4c4c-b30e-8871db9ff5ca