Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID APTX 54840 hgsc.bcm.edu 36 9 32978112 32978118 + Frame_Shift_Del DEL TCTGCTT TCTGCTT - novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 TCTGCTT TCTGCTT . . . . Unknown Untested Somatic Phase_III WXS none SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc CCDC141 285025 hgsc.bcm.edu 36 2 179410073 179410073 + Missense_Mutation SNP C C A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc EXOC2 55770 hgsc.bcm.edu 36 6 582784 582802 + Frame_Shift_Del DEL CCGGTCACAAGGGGGGGTT CCGGTCACAAGGGGGGGTT - novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 CCGGTCACAAGGGGGGGTT CCGGTCACAAGGGGGGGTT . . . . Unknown Untested Somatic Phase_III WXS none SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc JAK2 3717 hgsc.bcm.edu 36 9 5062586 5062586 + Missense_Mutation SNP T T C novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc MAK16 84549 hgsc.bcm.edu 36 8 33472621 33472621 + Missense_Mutation SNP C C T novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc SEMA4A 64218 hgsc.bcm.edu 36 1 154397905 154397905 + Missense_Mutation SNP C C T novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc SNX8 29886 hgsc.bcm.edu 36 7 2278112 2278112 + Missense_Mutation SNP C C A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc UNG 7374 hgsc.bcm.edu 36 12 108020600 108020600 + Missense_Mutation SNP T T C novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc APLF 200558 hgsc.bcm.edu 36 2 68658523 68658523 + Missense_Mutation SNP C C A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc CARD6 84674 hgsc.bcm.edu 36 5 40889849 40889849 + Silent SNP A A T novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc CPXCR1 53336 hgsc.bcm.edu 36 X 87895687 87895687 + Missense_Mutation SNP C C T novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc CYFIP1 23191 hgsc.bcm.edu 36 15 20479891 20479891 + Missense_Mutation SNP G G C novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc FAM129A 116496 hgsc.bcm.edu 36 1 183059456 183059456 + Missense_Mutation SNP T T G novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 T T T G T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc FAM71B 153745 hgsc.bcm.edu 36 5 156522348 156522348 + Silent SNP G G A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc GPR113 165082 hgsc.bcm.edu 36 2 26387453 26387453 + Missense_Mutation SNP G G A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc HFE2 148738 hgsc.bcm.edu 36 1 144127758 144127758 + Missense_Mutation SNP A A G novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc LAIR2 3904 hgsc.bcm.edu 36 19 59711144 59711144 + Silent SNP T T C novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc MOXD1 26002 hgsc.bcm.edu 36 6 132660118 132660118 + Missense_Mutation SNP A A G novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc PCSK1 5122 hgsc.bcm.edu 36 5 95787360 95787360 + Missense_Mutation SNP C C G novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc RNF213 57674 hgsc.bcm.edu 36 17 75934929 75934929 + Silent SNP G G A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc TEX11 56159 hgsc.bcm.edu 36 X 69861895 69861895 + Silent SNP A A G novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc TP53 7157 hgsc.bcm.edu 36 17 7518273 7518273 + Missense_Mutation SNP C C T rs28934575 TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc ZC3H13 23091 hgsc.bcm.edu 36 13 45517620 45517620 + Silent SNP G G A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc ANO3 63982 hgsc.bcm.edu 36 11 26617345 26617345 + Missense_Mutation SNP T T A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc APOB 338 hgsc.bcm.edu 36 2 21084401 21084401 + Silent SNP G G A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc ARFGEF1 10565 hgsc.bcm.edu 36 8 68286377 68286377 + Missense_Mutation SNP T T C novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 T T T C T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc COL22A1 169044 hgsc.bcm.edu 36 8 139772290 139772290 + Missense_Mutation SNP C C T novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc COL6A3 1293 hgsc.bcm.edu 36 2 237950405 237950405 + Missense_Mutation SNP A A C novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 A A A C A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc CRISPLD1 83690 hgsc.bcm.edu 36 8 76087259 76087259 + Missense_Mutation SNP T T A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc CSRNP3 80034 hgsc.bcm.edu 36 2 166243961 166243961 + Missense_Mutation SNP G G C novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 G G C C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc CUX1 1523 hgsc.bcm.edu 36 7 101630092 101630092 + Missense_Mutation SNP G G T novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc DMTF1 9988 hgsc.bcm.edu 36 7 86638306 86638306 + Missense_Mutation SNP G G A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc EIF4A2 1974 hgsc.bcm.edu 36 3 187984101 187984101 + Missense_Mutation SNP G G T novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc GAB2 9846 hgsc.bcm.edu 36 11 77615537 77615537 + Missense_Mutation SNP G G A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc MYH11 4629 hgsc.bcm.edu 36 16 15777486 15777486 + Missense_Mutation SNP G G C novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc NCKAP1L 3071 hgsc.bcm.edu 36 12 53179515 53179515 + Missense_Mutation SNP C C T novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc PTCHD1 139411 hgsc.bcm.edu 36 X 23307779 23307779 + Silent SNP C C A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc RBPJ 3516 hgsc.bcm.edu 36 4 26041436 26041436 + Silent SNP C C T rs1064380 TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc SPOP 8405 hgsc.bcm.edu 36 17 45039703 45039703 + Nonsense_Mutation SNP C C A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 C C A A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc ST18 9705 hgsc.bcm.edu 36 8 53188438 53188438 + Missense_Mutation SNP T T A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc TLR8 51311 hgsc.bcm.edu 36 X 12848977 12848977 + Missense_Mutation SNP T T A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc BAI3 577 hgsc.bcm.edu 36 6 69722751 69722751 + Missense_Mutation SNP G G A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc LATS2 26524 hgsc.bcm.edu 36 13 20517951 20517951 + Missense_Mutation SNP G G A novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc TMPRSS6 164656 hgsc.bcm.edu 36 22 35824418 35824418 + Missense_Mutation SNP G G T novel TCGA-36-1568-01A-01W-0615-10 TCGA-36-1568-10A-01W-0615-10 G G T T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 225f5cd1-52d7-40bf-9cf7-35d5ef11fd14 78072af8-358b-4134-b443-0cbf712de3dc