Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error ABCF2 10061 broad.mit.edu 36 7 150543644 150543644 + Nonsense_Mutation SNP G G C novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 G G Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 7 150543644 150543644 G C SNP ABCF2 NM_005692 human genbank 54_36p -1 reviewed nonsense c.1509 p.Y503* 0.99 superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1 - no_errors ACACB 32 broad.mit.edu 36 12 108089161 108089161 + Missense_Mutation SNP G G A novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 G G Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 12 108089161 108089161 G A SNP ACACB NM_001093 human genbank 54_36p 1 reviewed missense c.766 p.G256R 1 NULL HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp domain,superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_Rudiment single hybrid motif,HMMPfam_Biotin_carb_C,superfamily_Single hybrid motif,HMMPfam_Biotin_lipoyl,HMMPfam_ACC_central,superfamily_ClpP/crotonase,HMMPfam_Carboxyl_trans - no_errors ALG10B 144245 broad.mit.edu 36 12 36997041 36997041 + Missense_Mutation SNP T T A novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 T T Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 12 36997041 36997041 T A SNP ALG10B NM_001013620 human genbank 54_36p 1 validated missense c.79 p.F27I 1 NULL HMMPfam_DIE2_ALG10 - no_errors ATAD2 29028 broad.mit.edu 36 8 124430768 124430768 + Missense_Mutation SNP G G T novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 G G Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 8 124430768 124430768 G T SNP ATAD2 NM_014109 human genbank 54_36p -1 reviewed missense c.1744 p.P582T 1 HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_YL1,superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors CACNA1A 773 broad.mit.edu 36 19 13426965 13426965 + Nonsense_Mutation SNP G G A novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 G G Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 19 13426965 13426965 G A SNP CACNA1A ENST00000325084 human ensembl 54_36p -1 known nonsense c.355 p.Q119* 1 superfamily_Voltage-gated potassium channels HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels - no_errors CDK5RAP1 51654 broad.mit.edu 36 20 31424166 31424166 + Splice_Site SNP T T A novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 T T Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 20 31424166 31424166 T A SNP CDK5RAP1 NM_016408 human genbank 54_36p -1 reviewed splice_site c.1206-2 e9-2 1 - - - no_errors CSMD3 114788 broad.mit.edu 36 8 113472187 113472187 + Missense_Mutation SNP C C G novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 C C C G C C Unknown Valid Somatic Phase_I Capture Sanger_PCR_WGA Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 8 113472187 113472187 C G SNP CSMD3 NM_198123 human genbank 54_36p -1 validated missense c.5816 p.C1939S 1 HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain - no_errors EPHB6 2051 broad.mit.edu 36 7 142271518 142271518 + Missense_Mutation SNP G G T novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 G G Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 7 142271518 142271518 G T SNP EPHB6 NM_004445 human genbank 54_36p 1 reviewed missense c.63 p.L21F 0.98 superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615 superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SAM/Pointed domain - no_errors EYA1 2138 broad.mit.edu 36 8 72344570 72344570 + Missense_Mutation SNP G G A novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 G G Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 8 72344570 72344570 G A SNP EYA1 NM_000503 human genbank 54_36p -1 reviewed missense c.1009 p.H337Y 1 HMMPfam_Hydrolase HMMPfam_Hydrolase - no_errors FAM108A1 81926 broad.mit.edu 36 19 1828545 1828545 + Silent SNP G G A novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 G G Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 19 1828545 1828545 G A SNP FAM108A1 NM_031213 human genbank 54_36p -1 validated silent c.822 p.P274 1 HMMPfam_Abhydrolase_2,superfamily_alpha/beta-Hydrolases PatternScan_TONB_DEPENDENT_REC_1,superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_2 - no_errors FAM73A 374986 broad.mit.edu 36 1 78081625 78081625 + Missense_Mutation SNP G G T novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 G G Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 1 78081625 78081625 G T SNP FAM73A NM_198549 human genbank 54_36p 1 predicted missense c.941 p.G314V 0.97 HMMPfam_DUF2217 HMMPfam_DUF2217 - no_errors FAT2 2196 broad.mit.edu 36 5 150872082 150872082 + Silent SNP A A G novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 A A Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 5 150872082 150872082 A G SNP FAT2 NM_001447 human genbank 54_36p -1 reviewed silent c.11742 p.D3914 0.95 superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2 superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2 - no_errors FPGS 2356 broad.mit.edu 36 9 129609159 129609159 + Missense_Mutation SNP G G A novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 G G Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 9 129609159 129609159 G A SNP FPGS NM_004957 human genbank 54_36p 1 reviewed missense c.473 p.R158H 0.99 superfamily_MurD-like peptide ligases catalytic domain superfamily_MurD-like peptide ligases catalytic domain,PatternScan_FOLYLPOLYGLU_SYNT_1,PatternScan_FOLYLPOLYGLU_SYNT_2,HMMPfam_Mur_ligase_C,superfamily_MurD-like peptide ligases peptide-binding domain - no_errors GABPA 2551 broad.mit.edu 36 21 26043237 26043237 + Missense_Mutation SNP T T C novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 T T Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 21 26043237 26043237 T C SNP GABPA NM_002040 human genbank 54_36p 1 validated missense c.242 p.L81S 1 NULL superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2 - no_errors GPRC6A 222545 broad.mit.edu 36 6 117234278 117234278 + Missense_Mutation SNP T T C novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 T T Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 6 117234278 117234278 T C SNP GPRC6A NM_148963 human genbank 54_36p -1 validated missense c.1283 p.D428G 0.97 superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3 - no_errors HSPA2 3306 broad.mit.edu 36 14 64078539 64078539 + Missense_Mutation SNP G G A novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 G G Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 14 64078539 64078539 G A SNP HSPA2 NM_021979 human genbank 54_36p 1 validated missense c.1219 p.E407K 1 HMMPfam_HSP70,superfamily_SSF100920 superfamily_SSF53067,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF100920,superfamily_SSF100934 - no_errors LYPD6B 130576 broad.mit.edu 36 2 149777755 149777755 + Missense_Mutation SNP C C T novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 C C Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 2 149777755 149777755 C T SNP LYPD6B NM_177964 human genbank 54_36p 1 provisional missense c.332 p.T111I 1 superfamily_SSF57302,HMMSmart_LU superfamily_SSF57302,HMMSmart_LU - no_errors LZTS2 84445 broad.mit.edu 36 10 102753460 102753460 + Missense_Mutation SNP T T A novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 T T Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 10 102753460 102753460 T A SNP LZTS2 NM_032429 human genbank 54_36p 1 provisional missense c.615 p.F205L 0.96 NULL HMMPfam_Fez1 - no_errors MED12L 116931 broad.mit.edu 36 3 152393987 152393987 + Silent SNP A A G novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 A A Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 3 152393987 152393987 A G SNP MED12L NM_053002 human genbank 54_36p 1 validated silent c.1989 p.G663 1 NULL HMMPfam_Med12 - no_errors MON2 23041 broad.mit.edu 36 12 61258508 61258508 + Missense_Mutation SNP C C A novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 C C Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 12 61258508 61258508 C A SNP MON2 NM_015026 human genbank 54_36p 1 validated missense c.4531 p.L1511I 1 superfamily_ARM-type_fold superfamily_ARM-type_fold,HMMPfam_DUF1981 - no_errors MS4A8B 83661 broad.mit.edu 36 11 60227519 60227519 + Nonsense_Mutation SNP C C G novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 C C Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 11 60227519 60227519 C G SNP MS4A8B NM_031457 human genbank 54_36p 1 reviewed nonsense c.312 p.Y104* 0.45 HMMPfam_CD20 HMMPfam_CD20 - no_errors NF1 4763 broad.mit.edu 36 17 26678731 26678731 + Nonsense_Mutation SNP C C A novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 C C C A C C Unknown Valid Somatic Phase_I Capture Sanger_PCR_WGA Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 17 26678731 26678731 C A SNP NF1 NM_001042492 human genbank 54_36p 1 reviewed nonsense c.5357 p.S1786* 1 NULL HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP - no_errors NUAK1 9891 broad.mit.edu 36 12 104985605 104985605 + Missense_Mutation SNP C C T novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 C C Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 12 104985605 104985605 C T SNP NUAK1 NM_014840 human genbank 54_36p -1 validated missense c.1091 p.R364Q 1 NULL superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST - no_errors OVCH1 341350 broad.mit.edu 36 12 29521596 29521596 + Silent SNP T T C novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 T T Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 12 29521596 29521596 T C SNP OVCH1 NM_183378 human genbank 54_36p -1 validated silent c.1191 p.E397 0 superfamily_Spermadhesin CUB domain HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER - no_errors PCDHA5 56143 broad.mit.edu 36 5 140182202 140182202 + Missense_Mutation SNP G G A novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 G G Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 5 140182202 140182202 G A SNP PCDHA5 NM_018908 human genbank 54_36p 1 reviewed missense c.658 p.E220K 0.54 superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin - no_errors PCDHGB1 56104 broad.mit.edu 36 5 140711189 140711189 + Missense_Mutation SNP C C A novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 C C Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 5 140711189 140711189 C A SNP PCDHGB1 NM_018922 human genbank 54_36p 1 reviewed missense c.1178 p.T393N 0.05 superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112 superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin - no_errors PLEKHG1 57480 broad.mit.edu 36 6 151096881 151096881 + Missense_Mutation SNP C C A novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 C C Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 6 151096881 151096881 C A SNP PLEKHG1 NM_001029884 human genbank 54_36p 1 provisional missense c.371 p.T124N 1 superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325 superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233 - no_errors PRKD1 5587 broad.mit.edu 36 14 29169942 29169942 + Missense_Mutation SNP C C T novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 C C Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 14 29169942 29169942 C T SNP PRKD1 NM_002742 human genbank 54_36p -1 validated missense c.1429 p.V477I 1 superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST - no_errors SALL4 57167 broad.mit.edu 36 20 49841662 49841662 + Missense_Mutation SNP G G C novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 G G Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 20 49841662 49841662 G C SNP SALL4 NM_020436 human genbank 54_36p -1 reviewed missense c.767 p.T256S 0.98 NULL HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 - no_errors SDK1 221935 broad.mit.edu 36 7 4055543 4055543 + Silent SNP C C T novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 C C Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 7 4055543 4055543 C T SNP SDK1 NM_152744 human genbank 54_36p 1 validated silent c.2640 p.A880 0.68 HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin - no_errors TAOK1 57551 broad.mit.edu 36 17 24893738 24893738 + Missense_Mutation SNP C C T novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 C C Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 17 24893738 24893738 C T SNP TAOK1 NM_020791 human genbank 54_36p 1 validated missense c.2578 p.R860C 1 superfamily_Protein kinase-like (PK-like) superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST - no_errors TCHHL1 126637 broad.mit.edu 36 1 150326075 150326075 + Missense_Mutation SNP T T G novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 T T Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 1 150326075 150326075 T G SNP TCHHL1 NM_001008536 human genbank 54_36p -1 provisional missense c.707 p.D236A 0 NULL PatternScan_S100_CABP,superfamily_SSF47473,HMMPfam_S_100 - no_errors TMEM63C 57156 broad.mit.edu 36 14 76785535 76785535 + Missense_Mutation SNP C C G novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 C C Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 14 76785535 76785535 C G SNP TMEM63C NM_020431 human genbank 54_36p 1 validated missense c.2019 p.F673L 1 HMMPfam_DUF221 HMMPfam_DUF221 - no_errors TOP2A 7153 broad.mit.edu 36 17 35799793 35799793 + Missense_Mutation SNP C C A novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 C C C A C C Unknown Valid Somatic Phase_I Capture Sanger_PCR_WGA Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 17 35799793 35799793 C A SNP TOP2A NM_001067 human genbank 54_36p -1 reviewed missense c.4417 p.D1473Y 1 HMMPfam_DTHCT superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,HMMSmart_SM00433,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_DNA_gyraseB,superfamily_Type II DNA topoisomerase,PatternScan_TOPOISOMERASE_II,HMMSmart_SM00434,HMMPfam_DNA_topoisoIV,HMMPfam_DTHCT - no_errors TP53 7157 broad.mit.edu 36 17 7518901 7518901 + Splice_Site SNP C C T novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 C C C T C C Unknown Valid Somatic Phase_I Capture Sanger_PCR_WGA Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 17 7518901 7518901 C T SNP TP53 NM_000546 human genbank 54_36p -1 reviewed splice_site c.672+1 e5+1 1 - - - no_errors TPP2 7174 broad.mit.edu 36 13 102128653 102128653 + Missense_Mutation SNP T T G novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 T T Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 13 102128653 102128653 T G SNP TPP2 NM_003291 human genbank 54_36p 1 reviewed missense c.3736 p.Y1246D 1 NULL PatternScan_SUBTILASE_ASP,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER - no_errors UBR5 51366 broad.mit.edu 36 8 103423938 103423938 + Missense_Mutation SNP T T C novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 T T Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 8 103423938 103423938 T C SNP UBR5 NM_015902 human genbank 54_36p -1 reviewed missense c.1037 p.K346R 1 NULL HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_PABP,HMMSmart_PolyA,superfamily_PABP_HYD,HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1 - no_errors USP25 29761 broad.mit.edu 36 21 16121176 16121176 + Silent SNP A A G novel Unknown TCGA-30-1862-01A-02W-0699-08 TCGA-30-1862-10A-01W-0699-08 A A Unknown Unknown Somatic Phase_I Capture --- Illumina GAIIx f2dfa869-39e1-4e54-8adf-c2b5428753bb 02e93152-8b3e-45a1-b1a7-ae8ab12d105d 21 16121176 16121176 A G SNP USP25 NM_013396 human genbank 54_36p 1 validated silent c.1476 p.E492 1 superfamily_Cysteine proteinases,HMMPfam_UCH superfamily_UBA-like,HMMPfam_UIM,HMMSmart_SM00726,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2 - no_errors