Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error MMP21 118856 genome.wustl.edu 36 10 127445243 127445243 + Missense_Mutation SNP T T C novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 10 127445243 127445243 T C SNP MMP21 NM_147191 human genbank 54_36p -1 reviewed missense c.1688 p.H563R 0.99 NULL "HMMPfam_Hemopexin;superfamily_Hemopexin-like domain;HMMPfam_Peptidase_M10;HMMPfam_PG_binding_1;superfamily_PGBD-like;superfamily_Metalloproteases (""zincins"") catalytic domain" - no_errors IGHG2 3501 genome.wustl.edu 36 14 105180646 105180646 + Missense_Mutation SNP A A G novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 14 105180646 105180646 A G SNP IGHG2 ENST00000390545 human ensembl 54_36p -1 known missense c.919 p.C307R NULL - - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region KCNJ11 3767 genome.wustl.edu 36 11 17365114 17365121 + Frame_Shift_Del DEL GGGCCCGC GGGCCCGC - novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 GGGCCCGC GGGCCCGC GGGCCCGC - GGGCCCGC GGGCCCGC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 11 17365114 17365121 GGGCCCGC - DEL KCNJ11 NM_000525 human genbank 54_36p -1 reviewed frame_shift_del c.1101_1094 p.R365fs 0.057:0.060:0.050:0.001:0.001:0.001:0.000:0.001 NULL - (deletion:cds_exon[17365042;17366214]) no_errors GPR44 11251 genome.wustl.edu 36 11 60377379 60377379 + Silent SNP C C A novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 11 60377379 60377379 C A SNP GPR44 NM_004778 human genbank 54_36p -1 validated silent c.393 p.L131 1 HMMPfam_7tm_1 HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like - no_errors KRAS 3845 genome.wustl.edu 36 12 25289551 25289551 + Missense_Mutation SNP C C A novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 12 25289551 25289551 C A SNP KRAS NM_033360 human genbank 54_36p -1 reviewed missense c.35 p.G12V 1 HMMPfam_Ras superfamily_P-loop containing nucleoside triphosphate hydrolases;Ras;HMMPfam_Ras - no_errors KBTBD7 84078 genome.wustl.edu 36 13 40665783 40665783 + Missense_Mutation SNP C C A novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 13 40665783 40665783 C A SNP KBTBD7 NM_032138 human genbank 54_36p -1 provisional missense c.611 p.S204I 0.97 NULL - - no_errors OR4L1 122742 genome.wustl.edu 36 14 19598093 19598093 + Missense_Mutation SNP T T C novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 14 19598093 19598093 T C SNP OR4L1 NM_001004717 human genbank 54_36p 1 provisional missense c.50 p.F17S 0.23 NULL - - no_errors ABCB11 8647 genome.wustl.edu 36 2 169500012 169500012 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 2 169500012 169500012 G A SNP ABCB11 NM_003742 human genbank 54_36p -1 reviewed missense c.2984 p.A995V 1 HMMPfam_ABC_membrane HMMPfam_ABC_membrane;HMMPfam_ABC_tran;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain - no_errors DLGAP4 22839 genome.wustl.edu 36 20 34561482 34561482 + Silent SNP G G A novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 20 34561482 34561482 G A SNP DLGAP4 NM_183006 human genbank 54_36p 1 reviewed silent c.471 p.E157 1 NULL - - no_errors RTDR1 27156 genome.wustl.edu 36 22 21731715 21731715 + Silent SNP G G A novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 22 21731715 21731715 G A SNP RTDR1 NM_014433 human genbank 54_36p -1 reviewed silent c.972 p.Y324 NULL HMMPfam_Arm;superfamily_ARM repeat - no_errors SLC6A11 6538 genome.wustl.edu 36 3 10891711 10891711 + Silent SNP G G A novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 3 10891711 10891711 G A SNP SLC6A11 NM_014229 human genbank 54_36p 1 provisional silent c.822 p.T274 0.82 HMMPfam_SNF HMMPfam_SNF;superfamily_S-adenosylmethionine decarboxylase - no_errors FBXW7 55294 genome.wustl.edu 36 4 153466739 153466739 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 4 153466739 153466739 G A SNP FBXW7 NM_033632 human genbank 54_36p -1 reviewed missense c.1513 p.R505C 1 HMMPfam_WD40 WD40;HMMPfam_WD40;F-box;HMMPfam_F-box - no_errors ERGIC1 57222 genome.wustl.edu 36 5 172256654 172256654 + Silent SNP G G A novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 5 172256654 172256654 G A SNP ERGIC1 NM_001031711 human genbank 54_36p 1 reviewed silent c.126 p.S42 1 NULL - - no_errors CDH10 1008 genome.wustl.edu 36 5 24573255 24573255 + Missense_Mutation SNP A A G novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 5 24573255 24573255 A G SNP CDH10 NM_006727 human genbank 54_36p -1 reviewed missense c.517 p.S173P 1 HMMPfam_Cadherin HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like - no_errors TRIM39 56658 genome.wustl.edu 36 6 30416065 30416065 + Missense_Mutation SNP A A G novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 6 30416065 30416065 A G SNP TRIM39 NM_021253 human genbank 54_36p 1 reviewed missense c.841 p.I281V NULL - - no_errors C2 717 genome.wustl.edu 36 6 32004487 32004487 + Splice_Site SNP G G A novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 6 32004487 32004487 G A SNP C2 NM_000063 human genbank 54_36p 1 reviewed splice_site c.257-1 e3-1 0.56 - - - no_errors DST 667 genome.wustl.edu 36 6 56589822 56589822 + Silent SNP C C T novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 6 56589822 56589822 C T SNP DST NM_001723 human genbank 54_36p -1 reviewed silent c.6402 p.T2134 0.74 NULL - - no_errors PTPRN2 5799 genome.wustl.edu 36 7 157054389 157054389 + Silent SNP G G A novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 7 157054389 157054389 G A SNP PTPRN2 NM_002847 human genbank 54_36p -1 reviewed silent c.2868 p.V956 1 HMMPfam_Y_phosphatase HMMPfam_Y_phosphatase;superfamily_(Phosphotyrosine protein) phosphatases II - no_errors ADCYAP1R1 117 genome.wustl.edu 36 7 31090934 31090934 + Frame_Shift_Del DEL G G - novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 G G G - G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 7 31090934 31090934 G - DEL ADCYAP1R1 NM_001118 human genbank 54_36p 1 reviewed frame_shift_del c.496 p.V166fs 1 HMMPfam_7tm_2 HMMPfam_7tm_2;HMMPfam_HRM;superfamily_Hormone receptor domain (HRM Pfam 02793);superfamily_Family A G protein-coupled receptor-like (deletion:cds_exon[31090877;31090974]) no_errors CDH17 1015 genome.wustl.edu 36 8 95258002 95258002 + Nonsense_Mutation SNP G G A novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 8 95258002 95258002 G A SNP CDH17 NM_004063 human genbank 54_36p -1 reviewed nonsense c.367 p.R123* 0.27 NULL HMMPfam_Cadherin;superfamily_Cadherin-like - no_errors SLC39A6 25800 genome.wustl.edu 36 18 31956136 31956137 + Frame_Shift_Del DEL TA TA - novel Unknown TCGA-25-1316-01A-01W-0494-09 TCGA-25-1316-10A-01W-0494-09 TA TA TA - TA TA Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx d75a0b16-04e4-4ba3-a695-132c5ace698b 491a7bb5-af4a-4503-a09d-6e7bb09f137c 18 31956136 31956137 TA - DEL SLC39A6 NM_012319 human genbank 54_36p -1 validated frame_shift_del c.1236_1235 p.I412fs 0.981:0.972 HMMPfam_Zip HMMPfam_Zip (deletion:cds_exon[31956013;31956231]) no_errors