Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID C14orf148 122945 hgsc.bcm.edu 36 14 76950212 76950212 + Missense_Mutation SNP T T A novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 MICAL1 64780 hgsc.bcm.edu 36 6 109872832 109872832 + Missense_Mutation SNP T T G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 NSUN5C 260294 hgsc.bcm.edu 36 7 72058357 72058357 + Frame_Shift_Del DEL T T - novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 PDAP1 11333 hgsc.bcm.edu 36 7 98839005 98839005 + Frame_Shift_Del DEL C C - novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 ST3GAL2 6483 hgsc.bcm.edu 36 16 68974620 68974620 + Missense_Mutation SNP A A G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 TP53 7157 hgsc.bcm.edu 36 17 7517819 7517819 + Missense_Mutation SNP G G A rs28934574 TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 VAV3 10451 hgsc.bcm.edu 36 1 108101405 108101405 + Splice_Site SNP C C G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 XRN2 22803 hgsc.bcm.edu 36 20 21284789 21284789 + Nonsense_Mutation SNP G G T novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 APC 324 hgsc.bcm.edu 36 5 112204518 112204518 + Silent SNP A A G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 A A G G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 BMI1 648 hgsc.bcm.edu 36 10 22655470 22655470 + Missense_Mutation SNP C C A novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 C1orf183 55924 hgsc.bcm.edu 36 1 112071340 112071340 + Missense_Mutation SNP C C A novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 CLEC4F 165530 hgsc.bcm.edu 36 2 70889992 70889992 + Missense_Mutation SNP T T G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 T T T G T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 CNGA3 1261 hgsc.bcm.edu 36 2 98360684 98360684 + Missense_Mutation SNP G G T novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 DMXL2 23312 hgsc.bcm.edu 36 15 49579143 49579143 + Missense_Mutation SNP A A T novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 A A T T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 FAM102A 399665 hgsc.bcm.edu 36 9 129755943 129755943 + Silent SNP G G A novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 GPR4 2828 hgsc.bcm.edu 36 19 50786000 50786000 + Missense_Mutation SNP G G T novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 GTF2IRD1 9569 hgsc.bcm.edu 36 7 73643154 73643154 + Silent SNP C C T novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 IFI6 2537 hgsc.bcm.edu 36 1 27865537 27865537 + Missense_Mutation SNP C C G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C G G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 INADL 10207 hgsc.bcm.edu 36 1 62137900 62137900 + Missense_Mutation SNP G G T novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 IVNS1ABP 10625 hgsc.bcm.edu 36 1 183537277 183537277 + Silent SNP G G A novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 KAL1 3730 hgsc.bcm.edu 36 X 8515963 8515963 + Missense_Mutation SNP G G T novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 KIAA1217 56243 hgsc.bcm.edu 36 10 24872409 24872409 + Missense_Mutation SNP G G T novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 LAMA1 284217 hgsc.bcm.edu 36 18 6976307 6976307 + Silent SNP G G A novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 MAN2B2 23324 hgsc.bcm.edu 36 4 6670082 6670082 + Missense_Mutation SNP G G T novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 G G T T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 MFSD2 84879 hgsc.bcm.edu 36 1 40195401 40195401 + Missense_Mutation SNP C C G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 MYCL1 4610 hgsc.bcm.edu 36 1 40135829 40135829 + Silent SNP C C G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 MYPN 84665 hgsc.bcm.edu 36 10 69596398 69596398 + Missense_Mutation SNP G G C novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 NFASC 23114 hgsc.bcm.edu 36 1 203206450 203206450 + Missense_Mutation SNP A A T novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 PGBD1 84547 hgsc.bcm.edu 36 6 28377517 28377517 + Missense_Mutation SNP T T G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 T T T G T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 PPHLN1 51535 hgsc.bcm.edu 36 12 41015986 41015986 + Silent SNP A A C novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 A A A C A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 RND1 27289 hgsc.bcm.edu 36 12 47545777 47545777 + Missense_Mutation SNP C C A novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 RNF128 79589 hgsc.bcm.edu 36 X 105921083 105921083 + Silent SNP A A G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 SARS2 54938 hgsc.bcm.edu 36 19 44113066 44113066 + Missense_Mutation SNP C C A novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 SLC23A2 9962 hgsc.bcm.edu 36 20 4785800 4785800 + Missense_Mutation SNP C C G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 TMED6 146456 hgsc.bcm.edu 36 16 67934832 67934832 + Silent SNP A A G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 VIT 5212 hgsc.bcm.edu 36 2 36864042 36864042 + Silent SNP A A G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 DENND1A 57706 hgsc.bcm.edu 36 9 125432577 125432577 + Splice_Site SNP C C G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 HTATSF1 27336 hgsc.bcm.edu 36 X 135407528 135407528 + Missense_Mutation SNP G G C novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 KIAA1409 57578 hgsc.bcm.edu 36 14 93133499 93133499 + Missense_Mutation SNP T T C novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 T T T C T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 LCT 3938 hgsc.bcm.edu 36 2 136291618 136291618 + Missense_Mutation SNP C C A novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 LGR6 59352 hgsc.bcm.edu 36 1 200516573 200516585 + Frame_Shift_Del DEL GCTTCGAGGGGCT GCTTCGAGGGGCT - novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 GCTTCGAGGGGCT GCTTCGAGGGGCT GCTTCGAGGGGCT - GCTTCGAGGGGCT GCTTCGAGGGGCT Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 MAP3K10 4294 hgsc.bcm.edu 36 19 45396137 45396137 + Missense_Mutation SNP C C A novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 ODZ1 10178 hgsc.bcm.edu 36 X 123345314 123345314 + Missense_Mutation SNP C C T novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 PDE6H 5149 hgsc.bcm.edu 36 12 15022348 15022348 + Splice_Site SNP G G C novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 G G C C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 PDGFC 56034 hgsc.bcm.edu 36 4 157951447 157951447 + Missense_Mutation SNP C C A novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C A A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 RAPGEF6 51735 hgsc.bcm.edu 36 5 130843272 130843272 + Missense_Mutation SNP T T G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 T T G G T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 SEC63 11231 hgsc.bcm.edu 36 6 108352750 108352750 + Nonsense_Mutation SNP C C A novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 SLAMF1 6504 hgsc.bcm.edu 36 1 158883331 158883331 + Missense_Mutation SNP G G A novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 SLC26A4 5172 hgsc.bcm.edu 36 7 107129629 107129629 + Missense_Mutation SNP C C A novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C A A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 SNPH 9751 hgsc.bcm.edu 36 20 1225867 1225867 + Nonsense_Mutation SNP C C G novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2 TTC18 118491 hgsc.bcm.edu 36 10 74784536 74784536 + Missense_Mutation SNP T T C novel TCGA-24-1567-01A-01W-0615-10 TCGA-24-1567-10A-01W-0615-10 T T T C T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID de46c81d-93cb-458b-a745-a54d346a5981 d2d268b0-6174-488b-a18b-cbba452158a2