Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
SV2A	9900	genome.wustl.edu	36	1	148147385	148147385	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	1	148147385	148147385	C	A	SNP	SV2A	NM_014849	human	genbank	54_36p	-1	validated	missense	c.1362	p.W454C	1	NULL	-	-	no_errors
SV2A	9900	genome.wustl.edu	36	1	148147977	148147977	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	1	148147977	148147977	T	G	SNP	SV2A	NM_014849	human	genbank	54_36p	-1	validated	silent	c.1179	p.S393	0.99	NULL	-	-	no_errors
ITLN1	55600	genome.wustl.edu	36	1	159118580	159118580	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	1	159118580	159118580	A	T	SNP	ITLN1	NM_017625	human	genbank	54_36p	-1	validated	missense	c.196	p.Y66N	1	HMMPfam_Fibrinogen_C	HMMPfam_Fibrinogen_C;superfamily_Fibrinogen C-terminal domain-like	-	no_errors
QSOX1	5768	genome.wustl.edu	36	1	178432226	178432226	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	1	178432226	178432226	G	A	SNP	QSOX1	NM_002826	human	genbank	54_36p	1	reviewed	missense	c.1675	p.A559T	0.01	NULL	-	-	no_errors
KIAA1614	57710	genome.wustl.edu	36	1	179171458	179171458	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	1	179171458	179171458	C	T	SNP	KIAA1614	NM_020950	human	genbank	54_36p	1	validated	missense	c.1790	p.T597I	0.98	NULL	-	-	no_errors
C1orf172	126695	genome.wustl.edu	36	1	27150987	27150987	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	1	27150987	27150987	T	C	SNP	C1orf172	NM_152365	human	genbank	54_36p	-1	predicted	missense	c.472	p.S158G	1	NULL	-	-	no_errors
TAS1R1	80835	genome.wustl.edu	36	1	6553862	6553862	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	1	6553862	6553862	G	C	SNP	TAS1R1	NM_138697	human	genbank	54_36p	1	reviewed	missense	c.498	p.M166I	1	HMMPfam_ANF_receptor	HMMPfam_7tm_3;HMMPfam_ANF_receptor;HMMPfam_NCD3G;superfamily_Periplasmic binding protein-like I;superfamily_TNF receptor-like	-	no_errors
CAMTA1	23261	genome.wustl.edu	36	1	6807755	6807755	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	1	6807755	6807755	C	T	SNP	CAMTA1	NM_015215	human	genbank	54_36p	1	validated	silent	c.132	p.S44	1	NULL	HMMPfam_IQ;HMMPfam_Ank;superfamily_Ankyrin repeat;HMMPfam_TIG;HMMPfam_CG-1;superfamily_E set domains;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
C1orf52	148423	genome.wustl.edu	36	1	85497664	85497664	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	1	85497664	85497664	C	G	SNP	C1orf52	NM_198077	human	genbank	54_36p	-1	validated	missense	c.241	p.D81H	1	NULL	-	-	no_errors
NRAP	4892	genome.wustl.edu	36	10	115390036	115390036	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	10	115390036	115390036	G	T	SNP	NRAP	NM_198060	human	genbank	54_36p	-1	validated	missense	c.1368	p.N456K	1	NULL	HMMPfam_Nebulin;HMMPfam_LIM;superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
PITRM1	10531	genome.wustl.edu	36	10	3198518	3198518	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	10	3198518	3198518	C	T	SNP	PITRM1	NM_014889	human	genbank	54_36p	-1	validated	silent	c.321	p.E107	1	NULL	HMMPfam_Peptidase_M16_C;superfamily_LuxS/MPP-like metallohydrolase;HMMPfam_M16C_assoc	-	no_errors
ANKRD30A	91074	genome.wustl.edu	36	10	37546763	37546763	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	10	37546763	37546763	T	G	SNP	ANKRD30A	NM_052997	human	genbank	54_36p	1	validated	missense	c.3050	p.L1017R	0.02	NULL	HMMPfam_Ank;superfamily_Ankyrin repeat	-	no_errors
SLC16A9	220963	genome.wustl.edu	36	10	61083893	61083893	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	10	61083893	61083893	A	G	SNP	SLC16A9	NM_194298	human	genbank	54_36p	-1	validated	silent	c.897	p.A299	0.25	NULL	-	-	no_errors
HKDC1	80201	genome.wustl.edu	36	10	70680337	70680337	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	10	70680337	70680337	T	G	SNP	HKDC1	NM_025130	human	genbank	54_36p	1	validated	missense	c.1759	p.Y587D	1	HMMPfam_Hexokinase_1	HMMPfam_Hexokinase_1;HMMPfam_Hexokinase_2;superfamily_Actin-like ATPase domain	-	no_errors
RNF26	79102	genome.wustl.edu	36	11	118712206	118712206	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	11	118712206	118712206	G	A	SNP	RNF26	NM_032015	human	genbank	54_36p	1	reviewed	silent	c.1164	p.K388	1	NULL	-	-	no_errors
USH1C	10083	genome.wustl.edu	36	11	17505139	17505139	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	11	17505139	17505139	C	A	SNP	USH1C	NM_153676	human	genbank	54_36p	-1	reviewed	missense	c.521	p.S174I	1	NULL	HMMPfam_PDZ,superfamily_PDZ domain-like	-	no_errors
FAM111A	63901	genome.wustl.edu	36	11	58676814	58676814	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	11	58676814	58676814	C	G	SNP	FAM111A	NM_022074	human	genbank	54_36p	1	validated	missense	c.1097	p.T366S	0.03	NULL	superfamily_Trypsin-like serine proteases	-	no_errors
C11orf66	220004	genome.wustl.edu	36	11	61011203	61011203	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	11	61011203	61011203	G	C	SNP	C11orf66	NM_145017	human	genbank	54_36p	1	provisional	missense	c.958	p.G320R	1	NULL	-	-	no_errors
CUX2	23316	genome.wustl.edu	36	12	110230518	110230518	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	12	110230518	110230518	C	G	SNP	CUX2	NM_015267	human	genbank	54_36p	1	validated	missense	c.1156	p.Q386E	1	NULL	HMMPfam_Homeobox;HMMPfam_CUT;superfamily_Prefoldin;superfamily_Homeodomain-like	-	no_errors
ADAMTS20	80070	genome.wustl.edu	36	12	42112378	42112378	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	12	42112378	42112378	C	T	SNP	ADAMTS20	NM_025003	human	genbank	54_36p	-1	validated	missense	c.3092	p.S1031N	1	HMMPfam_TSP_1	"superfamily_Metalloproteases (""zincins"") catalytic domain;superfamily_TSP-1 type 1 repeat;TSP_1;HMMPfam_TSP_1;Reprolysin;HMMPfam_Reprolysin;Pep_M12B_propep;HMMPfam_Pep_M12B_propep;ADAM_spacer1;HMMPfam_ADAM_spacer1;GON;HMMPfam_GON"	-	no_errors
COL4A1	1282	genome.wustl.edu	36	13	109625612	109625612	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	13	109625612	109625612	T	A	SNP	COL4A1	NM_001845	human	genbank	54_36p	-1	reviewed	missense	c.3152	p.Q1051L	0.99	HMMPfam_Collagen	HMMPfam_C4;HMMPfam_Collagen;superfamily_C-type lectin-like	-	no_errors
STARD13	90627	genome.wustl.edu	36	13	32637488	32637488	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	13	32637488	32637488	T	A	SNP	STARD13	NM_178006	human	genbank	54_36p	-1	validated	silent	c.309	p.V103	1	HMMPfam_SAM_2	HMMPfam_RhoGAP;HMMPfam_START;superfamily_GTPase activation domain GAP;HMMPfam_SAM_2;superfamily_Bet v1-like	-	no_errors
RPL10L	140801	genome.wustl.edu	36	14	46190488	46190488	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	14	46190488	46190488	C	T	SNP	RPL10L	NM_080746	human	genbank	54_36p	-1	reviewed	missense	c.202	p.A68T	1	NULL	-	-	no_errors
ZFYVE26	23503	genome.wustl.edu	36	14	67292496	67292496	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	14	67292496	67292496	C	A	SNP	ZFYVE26	NM_015346	human	genbank	54_36p	-1	reviewed	missense	c.6708	p.K2236N	0.75	NULL	HMMPfam_FYVE;superfamily_FYVE/PHD zinc finger	-	no_errors
RASGRP1	10125	genome.wustl.edu	36	15	36591122	36591122	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	15	36591122	36591122	G	A	SNP	RASGRP1	NM_005739	human	genbank	54_36p	-1	reviewed	missense	c.941	p.S314L	1	HMMPfam_RasGEF	HMMPfam_RasGEF_N;HMMPfam_RasGEF;HMMPfam_efhand;HMMPfam_C1_1;superfamily_Ras GEF;superfamily_EF-hand;superfamily_Cysteine-rich domain	-	no_errors
DMXL2	23312	genome.wustl.edu	36	15	49617139	49617139	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	15	49617139	49617139	T	G	SNP	DMXL2	NM_015263	human	genbank	54_36p	-1	validated	silent	c.1455	p.P485	0.95	NULL	HMMPfam_WD40;superfamily_WD40 repeat-like	-	no_errors
RAB27A	5873	genome.wustl.edu	36	15	53308192	53308192	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	15	53308192	53308192	A	G	SNP	RAB27A	NM_004580	human	genbank	54_36p	-1	reviewed	silent	c.250	p.L84	1	HMMPfam_Ras	HMMPfam_Ras;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
IGDCC3	9543	genome.wustl.edu	36	15	63409183	63409183	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	15	63409183	63409183	C	A	SNP	IGDCC3	NM_004884	human	genbank	54_36p	-1	validated	missense	c.1931	p.G644V	1	NULL	HMMPfam_fn3;superfamily_Fibronectin type III;HMMPfam_I-set;HMMPfam_ig;superfamily_Immunoglobulin	-	no_errors
ZKSCAN2	342357	genome.wustl.edu	36	16	25163070	25163070	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	16	25163070	25163070	C	T	SNP	ZKSCAN2	NM_001012981	human	genbank	54_36p	-1	validated	silent	c.1518	p.K506	1	NULL	-	-	no_errors
PRSS36	146547	genome.wustl.edu	36	16	31067427	31067427	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	16	31067427	31067427	C	G	SNP	PRSS36	NM_173502	human	genbank	54_36p	-1	validated	missense	c.343	p.D115H	0.026	HMMPfam_Trypsin	HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases	-	no_errors
LOC390732	390732	genome.wustl.edu	36	16	54319583	54319583	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	16	54319583	54319583	G	A	SNP	LOC390732	XR_016696	human	genbank	54_36p	1	model	rna	NULL	NULL	0.07	-	-	-	pseudogene
MYH1	4619	genome.wustl.edu	36	17	10340336	10340336	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	17	10340336	10340336	G	A	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	missense	c.4912	p.R1638C	1	HMMPfam_Myosin_tail_1	HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_Myosin_tail_1;HMMPfam_Myosin_N;superfamily_Prefoldin;superfamily_tRNA-binding arm;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TBC1D28	254272	genome.wustl.edu	36	17	18482408	18482408	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	17	18482408	18482408	C	T	SNP	TBC1D28	NM_001039397	human	genbank	54_36p	-1	validated	silent	c.330	p.A110	0.1	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
BCAS3	54828	genome.wustl.edu	36	17	56321844	56321844	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	17	56321844	56321844	A	G	SNP	BCAS3	NM_001099432	human	genbank	54_36p	1	validated	missense	c.668	p.Y223C	1	NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	17	7518990	7518990	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.584	p.I195T	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
ZNF429	353088	genome.wustl.edu	36	19	21512311	21512311	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	19	21512311	21512311	G	A	SNP	ZNF429	NM_001001415	human	genbank	54_36p	1	provisional	missense	c.1616	p.C539Y	0.03	NULL	-	-	no_errors
NLRP9	338321	genome.wustl.edu	36	19	60941532	60941532	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	19	60941532	60941532	C	T	SNP	NLRP9	NM_176820	human	genbank	54_36p	-1	reviewed	silent	c.21	p.S7	0.03	HMMPfam_PAAD_DAPIN	HMMPfam_PAAD_DAPIN;HMMPfam_NACHT;superfamily_DEATH domain;superfamily_RNI-like;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NLRP5	126206	genome.wustl.edu	36	19	61231095	61231095	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	19	61231095	61231095	C	T	SNP	NLRP5	NM_153447	human	genbank	54_36p	1	reviewed	missense	c.1627	p.R543C	0.02	NULL	-	-	no_errors
EMR1	2015	genome.wustl.edu	36	19	6870735	6870735	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	19	6870735	6870735	A	G	SNP	EMR1	NM_001974	human	genbank	54_36p	1	reviewed	missense	c.1597	p.I533V		NULL	HMMPfam_GPS;HMMPfam_7tm_2;HMMPfam_EGF_CA;superfamily_EGF/Laminin;superfamily_Family A G protein-coupled receptor-like	-	no_errors
ARHGEF18	23370	genome.wustl.edu	36	19	7429469	7429469	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	19	7429469	7429469	G	T	SNP	ARHGEF18	NM_015318	human	genbank	54_36p	1	reviewed	missense	c.1215	p.M405I	1	HMMPfam_PH	HMMPfam_RhoGEF;HMMPfam_PH;superfamily_DBL homology domain (DH-domain);superfamily_PH domain-like	-	no_errors
ZNF177	7730	genome.wustl.edu	36	19	9353249	9353249	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	19	9353249	9353249	C	G	SNP	ZNF177	NM_003451	human	genbank	54_36p	1	provisional	missense	c.762	p.H254Q	0.07	NULL	-	-	no_errors
LOC653781	653781	genome.wustl.edu	36	2	131128973	131128973	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	2	131128973	131128973	A	C	SNP	LOC653781	XM_929706	human	genbank	54_36p	1	model	missense	c.1677	p.Q559H	0.95	NULL	-	-	no_errors
COBLL1	22837	genome.wustl.edu	36	2	165267892	165267892	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	2	165267892	165267892	C	A	SNP	COBLL1	NM_014900	human	genbank	54_36p	-1	validated	missense	c.1310	p.G437V	0.98	NULL	-	-	no_errors
COPS7B	64708	genome.wustl.edu	36	2	232369216	232369216	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	2	232369216	232369216	A	G	SNP	COPS7B	NM_022730	human	genbank	54_36p	1	provisional	missense	c.484	p.I162V	1	NULL	-	-	no_errors
GIGYF2	26058	genome.wustl.edu	36	2	233369150	233369150	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	2	233369150	233369150	C	A	SNP	GIGYF2	NM_001103147	human	genbank	54_36p	1	validated	nonsense	c.1677	p.Y559*	1	NULL	-	-	no_errors
ILKAP	80895	genome.wustl.edu	36	2	238755558	238755558	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	2	238755558	238755558	C	G	SNP	ILKAP	NM_030768	human	genbank	54_36p	-1	reviewed	missense	c.723	p.L241F	1	HMMPfam_PP2C	HMMPfam_PP2C;superfamily_Protein serine/threonine phosphatase 2C catalytic domain	-	no_errors
PRR21	643905	genome.wustl.edu	36	2	240630920	240630920	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	2	240630920	240630920	A	G	SNP	LOC643905	NM_001080835	human	genbank	54_36p	-1	predicted	silent	c.153	p.H51	0	NULL	-	-	no_errors
TGM6	343641	genome.wustl.edu	36	20	2328980	2328980	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	20	2328980	2328980	G	T	SNP	TGM6	NM_198994	human	genbank	54_36p	1	validated	silent	c.879	p.R293		NULL	-	-	no_errors
SYCP2	10388	genome.wustl.edu	36	20	57874784	57874784	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	20	57874784	57874784	T	A	SNP	SYCP2	NM_014258	human	genbank	54_36p	-1	reviewed	nonsense	c.4279	p.K1427*	1	NULL	-	-	no_errors
CABIN1	23523	genome.wustl.edu	36	22	22821950	22821950	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	22	22821950	22821950	G	A	SNP	CABIN1	NM_012295	human	genbank	54_36p	1	reviewed	silent	c.3843	p.G1281	0.98	NULL	HMMPfam_TPR_1;HMMPfam_MEF2_binding;superfamily_TPR-like	-	no_errors
UQCR10	29796	genome.wustl.edu	36	22	28493396	28493396	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	22	28493396	28493396	C	T	SNP	UCRC	NM_013387	human	genbank	54_36p	1	validated	silent	c.9	p.A3		NULL	HMMPfam_UCR_UQCRX_QCR9	-	no_errors
PHLDB2	90102	genome.wustl.edu	36	3	113086793	113086793	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	3	113086793	113086793	A	T	SNP	PHLDB2	NM_145753	human	genbank	54_36p	1	validated	silent	c.1179	p.A393	0.3	NULL	-	-	no_errors
LOC645515	645515	genome.wustl.edu	36	3	144719428	144719428	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	3	144719428	144719428	C	A	SNP	LOC645515	XR_017588	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
GFM1	85476	genome.wustl.edu	36	3	159852601	159852601	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	3	159852601	159852601	A	G	SNP	GFM1	NM_024996	human	genbank	54_36p	1	reviewed	missense	c.712	p.I238V	1	NULL	-	-	no_errors
ETV5	2119	genome.wustl.edu	36	3	187305791	187305791	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	3	187305791	187305791	T	G	SNP	ETV5	NM_004454	human	genbank	54_36p	-1	validated	missense	c.229	p.N77H	1	HMMPfam_ETS_PEA3_N	"HMMPfam_Ets;HMMPfam_ETS_PEA3_N;superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
TMF1	7110	genome.wustl.edu	36	3	69165545	69165546	+	Missense_Mutation	DNP	TC	TC	GA	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	TC	TC	TC	GA	TC	TC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	3	69165545	69165546	TC	GA	DNP	TMF1	NM_007114	human	genbank	54_36p	-1	validated	missense	c.2245_2246	p.Q749H	1.000:1.000	NULL	-	-	no_errors
GBE1	2632	genome.wustl.edu	36	3	81837424	81837424	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	3	81837424	81837424	G	A	SNP	GBE1	NM_000158	human	genbank	54_36p	-1	reviewed	silent	c.174	p.N58	0.76	NULL	HMMPfam_Isoamylase_N;HMMPfam_Alpha-amylase;HMMPfam_Alpha-amylase_C;superfamily_E set domains;superfamily_Glycosyl hydrolase domain;superfamily_(Trans)glycosidases	-	no_errors
IL8	3576	genome.wustl.edu	36	4	74826153	74826153	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	4	74826153	74826153	T	A	SNP	IL8	NM_000584	human	genbank	54_36p	1	reviewed	missense	c.95	p.L32H	0.99	HMMPfam_IL8	HMMPfam_IL8;superfamily_Interleukin 8-like chemokines	-	no_errors
GSTA1	2938	genome.wustl.edu	36	6	52765729	52765729	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	6	52765729	52765729	C	G	SNP	GSTA1	NM_145740	human	genbank	54_36p	-1	reviewed	missense	c.430	p.G144R	1	HMMPfam_GST_C	HMMPfam_GST_N;HMMPfam_GST_C;superfamily_Glutathione S-transferase (GST) C-terminal domain;superfamily_Thioredoxin-like	-	no_errors
COL21A1	81578	genome.wustl.edu	36	6	56143847	56143847	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	6	56143847	56143847	C	T	SNP	COL21A1	NM_030820	human	genbank	54_36p	-1	reviewed	missense	c.679	p.D227N	1	NULL	-	-	no_errors
DST	667	genome.wustl.edu	36	6	56614797	56614797	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	6	56614797	56614797	A	G	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.1301	p.I434T	1	NULL	-	-	no_errors
COL12A1	1303	genome.wustl.edu	36	6	75949716	75949716	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	6	75949716	75949716	G	C	SNP	COL12A1	NM_004370	human	genbank	54_36p	-1	reviewed	nonsense	c.1661	p.S554*	1	NULL	-	-	no_errors
KLHL32	114792	genome.wustl.edu	36	6	97693779	97693779	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	6	97693779	97693779	C	T	SNP	KLHL32	NM_052904	human	genbank	54_36p	1	validated	missense	c.1763	p.A588V	1	NULL	-	-	no_errors
DDC	1644	genome.wustl.edu	36	7	50579101	50579101	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	7	50579101	50579101	G	T	SNP	DDC	NM_000790	human	genbank	54_36p	-1	reviewed	missense	c.177	p.D59E	0.04	HMMPfam_Pyridoxal_deC	HMMPfam_Pyridoxal_deC;superfamily_PLP-dependent transferases	-	no_errors
HAS2	3037	genome.wustl.edu	36	8	122710319	122710319	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	8	122710319	122710319	C	T	SNP	HAS2	NM_005328	human	genbank	54_36p	-1	reviewed	nonsense	c.443	p.W148*	1	NULL	HMMPfam_Glycos_transf_2;superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
EPHX2	2053	genome.wustl.edu	36	8	27425322	27425322	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	8	27425322	27425322	G	C	SNP	EPHX2	NM_001979	human	genbank	54_36p	1	reviewed	missense	c.713	p.S238T	0.21	NULL	HMMPfam_Abhydrolase_1;HMMPfam_Hydrolase;superfamily_alpha/beta-Hydrolases;superfamily_HAD-like	-	no_errors
TRPA1	8989	genome.wustl.edu	36	8	73143827	73143827	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	8	73143827	73143827	A	G	SNP	TRPA1	NM_007332	human	genbank	54_36p	-1	reviewed	silent	c.429	p.N143	0.08	NULL	-	-	no_errors
CNGB3	54714	genome.wustl.edu	36	8	87729222	87729222	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	8	87729222	87729222	C	T	SNP	CNGB3	NM_019098	human	genbank	54_36p	-1	validated	missense	c.913	p.A305T	0.02	HMMPfam_Ion_trans	HMMPfam_cNMP_binding;superfamily_cAMP-binding domain-like;HMMPfam_Ion_trans;superfamily_Voltage-gated potassium channels	-	no_errors
TBC1D2	55357	genome.wustl.edu	36	9	100005503	100005503	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	9	100005503	100005503	G	T	SNP	TBC1D2	NM_018421	human	genbank	54_36p	-1	validated	missense	c.2159	p.A720D	1	NULL	-	-	no_errors
LOC441416	441416	genome.wustl.edu	36	9	44114369	44114369	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	9	44114369	44114369	G	T	SNP	LOC441416	XR_016304	human	genbank	54_36p	-1	model	rna	NULL	NULL		-	-	-	pseudogene
STAG2	10735	genome.wustl.edu	36	X	123011736	123011736	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	X	123011736	123011736	C	A	SNP	STAG2	NM_001042749	human	genbank	54_36p	1	validated	silent	c.913	p.R305	0.99	NULL	-	-	no_errors
CSF2RA	1438	genome.wustl.edu	36	X	1379504	1379504	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	X	1379504	1379504	G	T	SNP	CSF2RA	NM_006140	human	genbank	54_36p	1	reviewed	nonsense	c.931	p.E311*		NULL	superfamily_Fibronectin type III	-	no_errors
MAGEA11	4110	genome.wustl.edu	36	X	148576685	148576685	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	X	148576685	148576685	G	T	SNP	MAGEA11	NM_005366	human	genbank	54_36p	-1	reviewed	missense	c.574	p.L192I		NULL	HMMPfam_MAGE	-	no_errors
ZFX	7543	genome.wustl.edu	36	X	24136256	24136256	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	X	24136256	24136256	A	G	SNP	ZFX	NM_003410	human	genbank	54_36p	1	validated	missense	c.941	p.N314S	1	NULL	-	-	no_errors
SMC1A	8243	genome.wustl.edu	36	X	53449184	53449184	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b6c46b53-f94d-4936-9005-518c8f1c1449	45220598-26dc-4163-bb30-1aa5662006e1	X	53449184	53449184	C	T	SNP	SMC1A	NM_006306	human	genbank	54_36p	-1	reviewed	missense	c.1877	p.R626H	1	HMMPfam_SMC_N:HMMPfam_SMC_hinge	HMMPfam_SMC_N;HMMPfam_SMC_hinge;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Smc hinge domain	-	no_errors