Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error RSC1A1 6248 genome.wustl.edu 36 1 15859164 15859164 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 1 15859164 15859164 C G SNP RSC1A1 NM_006511 human genbank 54_36p 1 provisional missense c.214 p.L72V 0.1 NULL - - no_errors IPMK 253430 genome.wustl.edu 36 10 59656818 59656818 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 10 59656818 59656818 G A SNP IPMK NM_152230 human genbank 54_36p -1 provisional missense c.365 p.A122V 1 HMMPfam_IPK HMMPfam_IPK;superfamily_SAICAR synthase-like - no_errors PKNOX2 63876 genome.wustl.edu 36 11 124743010 124743010 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 11 124743010 124743010 C T SNP PKNOX2 NM_022062 human genbank 54_36p 1 validated missense c.146 p.S49L 1 NULL - - no_errors PSMC3 5702 genome.wustl.edu 36 11 47398461 47398461 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 11 47398461 47398461 C A SNP PSMC3 NM_002804 human genbank 54_36p -1 reviewed nonsense c.1057 p.E353* 1 NULL - - no_errors PTPRO 5800 genome.wustl.edu 36 12 15552818 15552818 + Silent SNP C C T novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 12 15552818 15552818 C T SNP PTPRO NM_030667 human genbank 54_36p 1 reviewed silent c.1314 p.H438 0.97 HMMPfam_fn3 HMMPfam_Y_phosphatase;HMMPfam_fn3;superfamily_Fibronectin type III;superfamily_(Phosphotyrosine protein) phosphatases II - no_errors DCN 1634 genome.wustl.edu 36 12 90082549 90082549 + Silent SNP G G T novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 12 90082549 90082549 G T SNP DCN NM_001920 human genbank 54_36p -1 reviewed silent c.288 p.I96 1 HMMPfam_LRR_1 HMMPfam_LRRNT;HMMPfam_LRR_1;superfamily_L domain-like - no_errors ABHD13 84945 genome.wustl.edu 36 13 107679821 107679821 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 13 107679821 107679821 C T SNP ABHD13 NM_032859 human genbank 54_36p 1 validated missense c.254 p.P85L 1 NULL HMMPfam_Abhydrolase_1;superfamily_alpha/beta-Hydrolases - no_errors SERPINA5 5104 genome.wustl.edu 36 14 94128255 94128255 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 14 94128255 94128255 G A SNP SERPINA5 NM_000624 human genbank 54_36p 1 validated missense c.1147 p.V383M HMMPfam_Serpin HMMPfam_Serpin;superfamily_Serpins - no_errors LOC440345 440345 genome.wustl.edu 36 16 21756262 21756262 + RNA SNP G G A novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 16 21756262 21756262 G A SNP LOC440345 XR_015786 human genbank 54_36p -1 model rna NULL NULL 0 - - - no_errors XPO6 23214 genome.wustl.edu 36 16 28030740 28030740 + Missense_Mutation SNP C C T Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 16 28030740 28030740 C T SNP XPO6 NM_015171 human genbank 54_36p -1 provisional missense c.2240 p.R747H 1 NULL - - no_errors ZNF267 10308 genome.wustl.edu 36 16 31834750 31834750 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 16 31834750 31834750 G C SNP ZNF267 NM_003414 human genbank 54_36p 1 validated missense c.1679 p.S560T 0.01 NULL - - no_errors NF1 4763 genome.wustl.edu 36 17 26687915 26687916 + Frame_Shift_Ins INS - - T novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 - - - T - - Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 17 26687915 26687916 - T INS NF1 NM_001042492 human genbank 54_36p 1 reviewed frame_shift_ins c.6284_6285 p.V2096fs 1.000:0.997 NULL - - no_errors VEZF1 7716 genome.wustl.edu 36 17 53411654 53411654 + Silent SNP G G A novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 17 53411654 53411654 G A SNP VEZF1 NM_007146 human genbank 54_36p -1 validated silent c.996 p.T332 1 NULL HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors TP53 7157 genome.wustl.edu 36 17 7520317 7520317 + Splice_Site SNP T T A novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 17 7520317 7520317 T A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed splice_site c.97-2 e3-2 0.19 - - - no_errors ALPK2 115701 genome.wustl.edu 36 18 54355093 54355093 + Silent SNP C C T novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 18 54355093 54355093 C T SNP ALPK2 NM_052947 human genbank 54_36p -1 validated silent c.3306 p.Q1102 NULL - - no_errors LOC646057 646057 genome.wustl.edu 36 15 18452955 18452955 + Silent SNP G G A novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 15 18452955 18452955 G A SNP LOC646057 XM_001716562 human genbank 54_36p -1 model silent c.684 p.T228 0.98 NULL - - no_errors TNPO2 30000 genome.wustl.edu 36 19 12675323 12675323 + Missense_Mutation SNP G G C Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 G G G C G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 19 12675323 12675323 G C SNP TNPO2 NM_013433 human genbank 54_36p -1 validated missense c.2128 p.L710V 1 NULL - - no_errors KIR2DL3 3804 genome.wustl.edu 36 19 59955724 59955724 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 19 59955724 59955724 C T SNP KIR2DL3 NM_015868 human genbank 54_36p 1 reviewed missense c.967 p.P323S 0.06 NULL HMMPfam_ig;superfamily_Immunoglobulin - no_errors ESF1 51575 genome.wustl.edu 36 20 13701204 13701204 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 20 13701204 13701204 C T SNP ESF1 NM_016649 human genbank 54_36p -1 provisional missense c.1207 p.V403I 0.62 NULL - - no_errors PROKR2 128674 genome.wustl.edu 36 20 5230949 5230949 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 20 5230949 5230949 G A SNP PROKR2 NM_144773 human genbank 54_36p -1 reviewed missense c.892 p.R298C 1 NULL - - no_errors PLCB4 5332 genome.wustl.edu 36 20 9236464 9236464 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 20 9236464 9236464 G A SNP PLCB4 NM_000933 human genbank 54_36p 1 reviewed missense c.3 p.M1I 1 NULL HMMPfam_C2;HMMPfam_PI-PLC-X;HMMPfam_PI-PLC-Y;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);HMMPfam_DUF1154;HMMPfam_efhand_like;superfamily_EF-hand;superfamily_PH domain-like;superfamily_PLC-like phosphodiesterases - no_errors ENSG00000215561 0 genome.wustl.edu 36 21 14228174 14228174 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 21 14228174 14228174 C A SNP ENSG00000215561 ENST00000400582 human ensembl 54_36p -1 known missense c.825 p.E275D 0.38 NULL - - no_start_codon CHEK2 11200 genome.wustl.edu 36 22 27422947 27422947 + Missense_Mutation SNP C T T novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 22 27422947 27422947 C T SNP CHEK2 NM_001005735 human genbank 54_36p -1 reviewed missense c.1166 p.R389H 1 HMMPfam_Pkinase HMMPfam_Pkinase;superfamily_SMAD/FHA domain;superfamily_Protein kinase-like (PK-like);FHA;HMMPfam_FHA;Pkinase - no_errors TMEM43 79188 genome.wustl.edu 36 3 14158264 14158264 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 3 14158264 14158264 C T SNP TMEM43 NM_024334 human genbank 54_36p 1 reviewed missense c.1171 p.R391W 0.752 NULL HMMPfam_DUF1625 - no_errors KLHL24 54800 genome.wustl.edu 36 3 184851541 184851541 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 3 184851541 184851541 C T SNP KLHL24 NM_017644 human genbank 54_36p 1 validated missense c.703 p.R235C 1 NULL - - no_errors FAT1 2195 genome.wustl.edu 36 4 187777869 187777869 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 4 187777869 187777869 C T SNP FAT1 NM_005245 human genbank 54_36p -1 reviewed missense c.6865 p.A2289T NULL - - no_errors CUL7 9820 genome.wustl.edu 36 6 43127973 43127973 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 6 43127973 43127973 G A SNP CUL7 NM_014780 human genbank 54_36p -1 validated missense c.532 p.R178C 0.97 NULL - - no_errors NT5E 4907 genome.wustl.edu 36 6 86253849 86253849 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 6 86253849 86253849 A G SNP NT5E NM_002526 human genbank 54_36p 1 validated missense c.1027 p.I343V 0.03 HMMPfam_5_nucleotid_C HMMPfam_5_nucleotid_C;superfamily_5'-nucleotidase (syn. UDP-sugar hydrolase) C-terminal domain;superfamily_Metallo-dependent phosphatases;HMMPfam_Metallophos - no_errors ZNF716 441234 genome.wustl.edu 36 7 57532718 57532718 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 7 57532718 57532718 T G SNP ZNF716 XM_001714654 human genbank 54_36p 1 model missense c.609 p.H203Q 0.02 NULL - - no_errors UBXN2B 137886 genome.wustl.edu 36 8 59514807 59514807 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 8 59514807 59514807 G A SNP UBXN2B NM_001077619 human genbank 54_36p 1 validated missense c.595 p.D199N 1 NULL - - no_errors DPY19L4 286148 genome.wustl.edu 36 8 95861770 95861770 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d 8 95861770 95861770 T A SNP DPY19L4 NM_181787 human genbank 54_36p 1 validated missense c.1583 p.I528N 1 NULL - - no_errors MUM1L1 139221 genome.wustl.edu 36 X 105337677 105337677 + Silent SNP C C G novel Unknown TCGA-24-1562-01A-01W-0553-09 TCGA-24-1562-10A-01W-0553-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 5e49bcea-9c1d-4cfd-a64c-4b84859bdda5 966af8f6-0208-4d00-9ece-65fae58a1c2d X 105337677 105337677 C G SNP MUM1L1 ENST00000337685 human ensembl 54_36p 1 known silent c.1596 p.T532 0.51 NULL superfamily_SSF63748 - no_errors