Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error INTS3 65123 genome.wustl.edu 36 1 152009314 152009314 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 1 152009314 152009314 G C SNP INTS3 NM_023015 human genbank 54_36p 1 validated missense c.2406 p.W802C 1 NULL - - no_errors NUP210L 91181 genome.wustl.edu 36 1 152262372 152262372 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 1 152262372 152262372 A T SNP NUP210L NM_207308 human genbank 54_36p -1 validated missense c.4148 p.V1383E 0.99 NULL - - no_errors ACTL8 81569 genome.wustl.edu 36 1 18025359 18025359 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 1 18025359 18025359 C A SNP ACTL8 NM_030812 human genbank 54_36p 1 provisional missense c.859 p.L287M NULL - - no_errors FAM5C 339479 genome.wustl.edu 36 1 188470230 188470230 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 1 188470230 188470230 C T SNP FAM5C NM_199051 human genbank 54_36p -1 provisional missense c.619 p.V207I 1 NULL HMMPfam_MACPF - no_errors SLC30A1 7779 genome.wustl.edu 36 1 209815995 209815995 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 1 209815995 209815995 A C SNP SLC30A1 NM_021194 human genbank 54_36p -1 validated missense c.882 p.F294L 0.97 NULL - - no_errors ITPKB 3707 genome.wustl.edu 36 1 224990219 224990219 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 1 224990219 224990219 G A SNP ITPKB NM_002221 human genbank 54_36p -1 reviewed missense c.1564 p.R522C NULL HMMPfam_IPK;superfamily_SAICAR synthase-like - no_errors NLRP3 114548 genome.wustl.edu 36 1 245648896 245648896 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 1 245648896 245648896 C G SNP NLRP3 NM_001079821 human genbank 54_36p 1 reviewed missense c.177 p.I59M 0.93 NULL - - no_errors BAI2 576 genome.wustl.edu 36 1 31994579 31994579 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 1 31994579 31994579 G T SNP BAI2 NM_001703 human genbank 54_36p -1 reviewed missense c.446 p.T149N 1 NULL - - no_errors MARCKSL1 65108 genome.wustl.edu 36 1 32572997 32572997 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 1 32572997 32572997 G A SNP MARCKSL1 NM_023009 human genbank 54_36p -1 validated nonsense c.376 p.Q126* 1 NULL HMMPfam_MARCKS - no_errors ADC 113451 genome.wustl.edu 36 1 33332896 33332896 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 1 33332896 33332896 G C SNP ADC NM_052998 human genbank 54_36p 1 validated missense c.748 p.E250Q 1 HMMPfam_Orn_Arg_deC_N HMMPfam_Orn_DAP_Arg_deC;HMMPfam_Orn_Arg_deC_N;superfamily_Alanine racemase C-terminal domain-like;superfamily_PLP-binding barrel - no_errors HIVEP3 59269 genome.wustl.edu 36 1 41820483 41820483 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 1 41820483 41820483 A G SNP HIVEP3 NM_024503 human genbank 54_36p -1 validated missense c.2573 p.I858T 1 NULL HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors LOC645291 645291 genome.wustl.edu 36 1 68401297 68401297 + RNA SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 1 68401297 68401297 C T SNP LOC645291 XR_017617 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene AKR1C1 1645 genome.wustl.edu 36 10 5004864 5004864 + Silent SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 10 5004864 5004864 C T SNP AKR1C1 NM_001353 human genbank 54_36p 1 reviewed silent c.769 p.L257 1 HMMPfam_Aldo_ket_red HMMPfam_Aldo_ket_red;superfamily_NAD(P)-linked oxidoreductase - no_errors PCDH15 65217 genome.wustl.edu 36 10 55625469 55625469 + Silent SNP G G A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 10 55625469 55625469 G A SNP PCDH15 NM_033056 human genbank 54_36p -1 reviewed silent c.1285 p.L429 1 HMMPfam_Cadherin HMMPfam_Cadherin;superfamily_Cadherin-like - no_errors DLG5 9231 genome.wustl.edu 36 10 79271717 79271731 + In_Frame_Del DEL CAGCTCCACTTCGGT CAGCTCCACTTCGGT - novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 CAGCTCCACTTCGGT CAGCTCCACTTCGGT CAGCTCCACTTCGGT - CAGCTCCACTTCGGT CAGCTCCACTTCGGT Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 10 79271717 79271731 CAGCTCCACTTCGGT - DEL DLG5 NM_004747 human genbank 54_36p -1 reviewed in_frame_del c.1365_1351 p.TEVEL451in_frame_del 1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.936:1.000:1.000 NULL - (deletion:cds_exon[79271645;79271957]) no_errors IGSF22 283284 genome.wustl.edu 36 11 18699666 18699666 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C G C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 11 18699666 18699666 C G SNP IGSF22 NM_173588 human genbank 54_36p -1 validated missense c.370 p.V124L 0.99 HMMPfam_I-set HMMPfam_fn3;superfamily_Fibronectin type III;HMMPfam_I-set;superfamily_Immunoglobulin - no_errors SYT13 57586 genome.wustl.edu 36 11 45230638 45230638 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 11 45230638 45230638 G C SNP SYT13 NM_020826 human genbank 54_36p -1 validated missense c.756 p.H252Q 0.99 HMMPfam_C2 HMMPfam_C2;superfamily_C2 domain (Calcium/lipid-binding domain CaLB) - no_errors OR8H2 390151 genome.wustl.edu 36 11 55629539 55629539 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 11 55629539 55629539 T G SNP OR8H2 NM_001005200 human genbank 54_36p 1 provisional missense c.445 p.Y149D 0.396 NULL - - no_errors ABCC9 10060 genome.wustl.edu 36 12 21845258 21845258 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 12 21845258 21845258 C T SNP ABCC9 NM_020297 human genbank 54_36p -1 reviewed missense c.4637 p.R1546H 1 NULL - - no_errors FGF23 8074 genome.wustl.edu 36 12 4349937 4349937 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 12 4349937 4349937 C T SNP FGF23 NM_020638 human genbank 54_36p -1 reviewed missense c.589 p.A197T 0.255 NULL HMMPfam_FGF,superfamily_Cytokine - no_errors ARID2 196528 genome.wustl.edu 36 12 44519445 44519445 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 12 44519445 44519445 A C SNP ARID2 NM_152641 human genbank 54_36p 1 validated missense c.1397 p.K466T 1 NULL - - no_errors PCDH20 64881 genome.wustl.edu 36 13 60884438 60884438 + Silent SNP G G T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 13 60884438 60884438 G T SNP PCDH20 NM_022843 human genbank 54_36p -1 validated silent c.1714 p.R572 1 HMMPfam_Cadherin HMMPfam_Cadherin;HMMPfam_Cadherin_2;superfamily_Cadherin-like - no_errors MYCBP2 23077 genome.wustl.edu 36 13 76652359 76652359 + Missense_Mutation SNP T G G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 T T G G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 13 76652359 76652359 T G SNP MYCBP2 NM_015057 human genbank 54_36p -1 validated missense c.4923 p.R1641S 1 NULL HMMPfam_RCC1;superfamily_Galactose-binding domain-like;superfamily_RCC1/BLIP-II;HMMPfam_PHR;superfamily_E set domains;superfamily_ARM repeat;superfamily_RING/U-box - no_errors RALGAPA1 253959 genome.wustl.edu 36 14 35166288 35166288 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 14 35166288 35166288 C T SNP GARNL1 NM_194301 human genbank 54_36p -1 provisional missense c.5098 p.G1700R 1 NULL - - no_errors TRIP11 9321 genome.wustl.edu 36 14 91542437 91542437 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 14 91542437 91542437 G A SNP TRIP11 NM_004239 human genbank 54_36p -1 validated missense c.1636 p.L546F 0.32 NULL "superfamily_Ribosomal protein L29 (L29p);superfamily_""Winged helix"" DNA-binding domain;superfamily_Spectrin repeat" - no_errors LOC100130960 100130960 genome.wustl.edu 36 4 153937093 153937093 + RNA SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 4 153937093 153937093 C T SNP LOC100130960 XR_038000 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene MYST1 84148 genome.wustl.edu 36 16 31039052 31039052 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 16 31039052 31039052 C G SNP MYST1 NM_182958 human genbank 54_36p 1 provisional missense c.256 p.R86G 1 NULL - - no_errors SLX4 84464 genome.wustl.edu 36 16 3579356 3579356 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 16 3579356 3579356 C A SNP BTBD12 NM_032444 human genbank 54_36p -1 provisional missense c.4284 p.W1428C 0.08 NULL - - no_errors HEATR3 55027 genome.wustl.edu 36 16 48666996 48666996 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 16 48666996 48666996 G T SNP HEATR3 NM_182922 human genbank 54_36p 1 provisional missense c.636 p.Q212H 1 NULL - - no_errors USP7 7874 genome.wustl.edu 36 16 8898375 8898375 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 16 8898375 8898375 T A SNP USP7 NM_003470 human genbank 54_36p -1 validated missense c.2801 p.K934I 1 NULL HMMPfam_UCH;HMMPfam_MATH;superfamily_TRAF domain-like;superfamily_Cysteine proteinases - no_errors NF1 4763 genome.wustl.edu 36 17 26686014 26686032 + Frame_Shift_Del DEL ATGACTCCATGGCTGTCAA ATGACTCCATGGCTGTCAA - novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 ATGACTCCATGGCTGTCAA ATGACTCCATGGCTGTCAA ATGACTCCATGGCTGTCAA - ATGACTCCATGGCTGTCAA ATGACTCCATGGCTGTCAA Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 17 26686014 26686032 ATGACTCCATGGCTGTCAA - DEL NF1 NM_001042492 human genbank 54_36p 1 reviewed frame_shift_del c.5845_5863 p.M1949fs 1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.993:0.953:1.000 NULL - (deletion:cds_exon[26685982;26686175]) no_errors TUBG1 7283 genome.wustl.edu 36 17 38017659 38017659 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 17 38017659 38017659 G T SNP TUBG1 NM_001070 human genbank 54_36p 1 reviewed missense c.371 p.R124L 1 NULL - - no_errors ACADVL 37 genome.wustl.edu 36 17 7066241 7066241 + Silent SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 17 7066241 7066241 C T SNP ACADVL NM_000018 human genbank 54_36p 1 reviewed silent c.774 p.I258 1 HMMPfam_Acyl-CoA_dh_M HMMPfam_Acyl-CoA_dh_1;HMMPfam_Acyl-CoA_dh_M;HMMPfam_Acyl-CoA_dh_N;superfamily_Acyl-CoA dehydrogenase C-terminal domain-like;superfamily_Acyl-CoA dehydrogenase NM domain-like - no_errors TP53 7157 genome.wustl.edu 36 17 7518226 7518226 + Frame_Shift_Del DEL G G - novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G - G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 17 7518226 7518226 G - DEL TP53 NM_000546 human genbank 54_36p -1 reviewed frame_shift_del c.780 p.S261fs 1 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD (deletion:cds_exon[7518224;7518333]) no_errors CCDC11 220136 genome.wustl.edu 36 18 46042428 46042428 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 18 46042428 46042428 T A SNP CCDC11 NM_145020 human genbank 54_36p -1 validated missense c.229 p.S77C 0.01 NULL - - no_errors C18orf54 162681 genome.wustl.edu 36 18 50143231 50143231 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C G C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 18 50143231 50143231 C G SNP C18orf54 NM_173529 human genbank 54_36p 1 validated missense c.682 p.P228A 1 NULL - - no_errors KIAA0802 23255 genome.wustl.edu 36 18 8809131 8809131 + Silent SNP G G A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 18 8809131 8809131 G A SNP KIAA0802 NM_015210 human genbank 54_36p 1 predicted silent c.3030 p.K1010 1 NULL - - no_errors ZNF98 148198 genome.wustl.edu 36 19 22366456 22366456 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 19 22366456 22366456 G A SNP ZNF98 NM_001098626 human genbank 54_36p -1 validated missense c.1421 p.S474F NULL - - no_errors ZNF91 7644 genome.wustl.edu 36 19 23337109 23337109 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 19 23337109 23337109 C G SNP ZNF91 NM_003430 human genbank 54_36p -1 validated missense c.512 p.R171T 0.083 NULL HMMPfam_KRAB,HMMPfam_zf-C2H2,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),superfamily_C2H2 and C2HC zinc fingers - no_errors MED29 55588 genome.wustl.edu 36 19 44574065 44574065 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 19 44574065 44574065 G C SNP MED29 NM_017592 human genbank 54_36p 1 provisional missense c.226 p.D76H 1 NULL - - no_errors SH3RF3 344558 genome.wustl.edu 36 2 109330603 109330603 + Silent SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 2 109330603 109330603 C T SNP SH3RF3 NM_001099289 human genbank 54_36p 1 provisional silent c.615 p.Y205 0.54 NULL - - no_stop_codon FAM171B 165215 genome.wustl.edu 36 2 187335673 187335673 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 2 187335673 187335673 G A SNP FAM171B NM_177454 human genbank 54_36p 1 validated missense c.2359 p.E787K 0.92 NULL - - no_errors INPP1 3628 genome.wustl.edu 36 2 190942166 190942166 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 2 190942166 190942166 G T SNP INPP1 NM_002194 human genbank 54_36p 1 reviewed missense c.559 p.G187C 1 HMMPfam_Inositol_P HMMPfam_Inositol_P;superfamily_Carbohydrate phosphatase - no_errors LOC151457 151457 genome.wustl.edu 36 2 20303334 20303334 + RNA SNP C C A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 2 20303334 20303334 C A SNP LOC151457 XR_016242 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene KIF3C 3797 genome.wustl.edu 36 2 26057663 26057663 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 2 26057663 26057663 T G SNP KIF3C NM_002254 human genbank 54_36p -1 validated missense c.628 p.N210H 1 NULL - - no_errors RNASEH1 246243 genome.wustl.edu 36 2 3575858 3575858 + Silent SNP G G A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 2 3575858 3575858 G A SNP RNASEH1 NM_002936 human genbank 54_36p -1 validated silent c.489 p.Y163 1 HMMPfam_RnaseH HMMPfam_RnaseH;superfamily_L9 N-domain-like;superfamily_Ribonuclease H-like - no_errors C2orf63 130162 genome.wustl.edu 36 2 55289342 55289342 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 2 55289342 55289342 C G SNP C2orf63 NM_152385 human genbank 54_36p -1 validated missense c.823 p.G275R NULL - - no_errors C2orf78 388960 genome.wustl.edu 36 2 73896646 73896646 + Silent SNP A A G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 2 73896646 73896646 A G SNP C2orf78 NM_001080474 human genbank 54_36p 1 predicted silent c.1788 p.V596 0.13 NULL - - no_errors SMYD1 150572 genome.wustl.edu 36 2 88164998 88164998 + Silent SNP C C G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 2 88164998 88164998 C G SNP SMYD1 NM_198274 human genbank 54_36p 1 provisional silent c.186 p.L62 1 NULL - - no_errors TMEM131 23505 genome.wustl.edu 36 2 97758903 97758903 + Silent SNP T T C novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 T T T C T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 2 97758903 97758903 T C SNP TMEM131 NM_015348 human genbank 54_36p -1 validated silent c.4155 p.K1385 0.96 NULL - - no_errors NAPB 10801 genome.wustl.edu 36 20 23308089 23308089 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G T G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 20 23308089 23308089 G T SNP NAPB NM_022080 human genbank 54_36p -1 validated missense c.779 p.T260N 1 NULL HMMPfam_NSF;superfamily_TPR-like - no_errors ABCG1 9619 genome.wustl.edu 36 21 42583288 42583288 + Silent SNP G G A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 21 42583288 42583288 G A SNP ABCG1 NM_004915 human genbank 54_36p 1 reviewed silent c.1320 p.L440 0.85 NULL - - no_errors UBASH3A 53347 genome.wustl.edu 36 21 42711737 42711737 + Silent SNP G G A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 21 42711737 42711737 G A SNP UBASH3A NM_018961 human genbank 54_36p 1 validated silent c.996 p.P332 0.75 HMMPfam_SH3_1 HMMPfam_UBA;HMMPfam_SH3_1;superfamily_SH3-domain;superfamily_UBA-like;HMMPfam_PGAM;superfamily_Phosphoglycerate mutase-like - no_errors PCNT 5116 genome.wustl.edu 36 21 46676267 46676267 + Nonsense_Mutation SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 21 46676267 46676267 C T SNP PCNT NM_006031 human genbank 54_36p 1 reviewed nonsense c.8461 p.Q2821* NULL - - no_errors SEZ6L 23544 genome.wustl.edu 36 22 25077080 25077080 + Silent SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 22 25077080 25077080 C T SNP SEZ6L NM_021115 human genbank 54_36p 1 validated silent c.2470 p.L824 1 HMMPfam_Sushi HMMPfam_Sushi;HMMPfam_CUB;superfamily_Spermadhesin CUB domain;superfamily_Complement control module/SCR domain - no_errors APOBEC3D 140564 genome.wustl.edu 36 22 37757785 37757785 + Silent SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 22 37757785 37757785 C T SNP APOBEC3D ENST00000216099 human ensembl 54_36p 1 known silent c.903 p.A301 0.03 NULL - - no_errors CPT1B 1375 genome.wustl.edu 36 22 49358237 49358237 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 22 49358237 49358237 C T SNP CPT1B NM_004377 human genbank 54_36p -1 reviewed missense c.1285 p.D429N 0.81 NULL - - no_errors GPR128 84873 genome.wustl.edu 36 3 101851320 101851320 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 3 101851320 101851320 T A SNP GPR128 NM_032787 human genbank 54_36p 1 provisional missense c.1358 p.V453D 0.3 NULL - - no_errors HEG1 57493 genome.wustl.edu 36 3 126215523 126215523 + Silent SNP G G T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G T G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 3 126215523 126215523 G T SNP HEG1 NM_020733 human genbank 54_36p -1 validated silent c.1590 p.I530 0.12 NULL - - no_errors BCHE 590 genome.wustl.edu 36 3 167030102 167030102 + Missense_Mutation SNP A G G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 A A G G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 3 167030102 167030102 A G SNP BCHE NM_000055 human genbank 54_36p -1 reviewed missense c.1414 p.F472L 1 HMMPfam_COesterase HMMPfam_COesterase;HMMPfam_AChE_tetra;superfamily_alpha/beta-Hydrolases - no_errors LOC131185 131185 genome.wustl.edu 36 3 18555915 18555915 + RNA SNP G T T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 3 18555915 18555915 G T SNP LOC131185 XR_016694 human genbank 54_36p 1 model rna NULL NULL 0.01 - - - pseudogene TRANK1 9881 genome.wustl.edu 36 3 36872216 36872216 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 3 36872216 36872216 A G SNP LBA1 NM_014831 human genbank 54_36p -1 validated missense c.2219 p.M740T 1 NULL - - no_errors NBEAL2 23218 genome.wustl.edu 36 3 47025493 47025493 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 3 47025493 47025493 G A SNP NBEAL2 NM_015175 human genbank 54_36p 1 validated missense c.8038 p.A2680T 0.011 NULL - - no_errors LOC339843 339843 genome.wustl.edu 36 3 99861734 99861734 + RNA SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 3 99861734 99861734 C T SNP LOC339843 XR_016598 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene LOC441034 441034 genome.wustl.edu 36 4 113928956 113928956 + RNA SNP A G G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 A A G G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 4 113928956 113928956 A G SNP LOC441034 XR_016809 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene SETD7 80854 genome.wustl.edu 36 4 140652340 140652340 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 4 140652340 140652340 C A SNP SETD7 NM_030648 human genbank 54_36p -1 validated missense c.1028 p.G343V 0.88 HMMPfam_SET HMMPfam_SET;HMMPfam_MORN;superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain;superfamily_SET domain - no_errors FAT1 2195 genome.wustl.edu 36 4 187867460 187867460 + Silent SNP G A A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 4 187867460 187867460 G A SNP FAT1 NM_005245 human genbank 54_36p -1 reviewed silent c.516 p.S172 1 NULL - - no_errors CRMP1 1400 genome.wustl.edu 36 4 5893964 5893964 + Silent SNP G A A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 4 5893964 5893964 G A SNP CRMP1 NM_001014809 human genbank 54_36p -1 reviewed silent c.1125 p.A375 0.25 HMMPfam_Amidohydro_1 HMMPfam_Amidohydro_1;superfamily_Composite domain of metallo-dependent hydrolases;superfamily_Metallo-dependent hydrolases - no_errors DNAH5 1767 genome.wustl.edu 36 5 13860741 13860741 + Missense_Mutation SNP T C C novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 T T C C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 5 13860741 13860741 T C SNP DNAH5 NM_001369 human genbank 54_36p -1 validated missense c.7846 p.S2616G 1 NULL - - no_errors PCDHB10 56126 genome.wustl.edu 36 5 140554683 140554683 + Nonsense_Mutation SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 5 140554683 140554683 C T SNP PCDHB10 NM_018930 human genbank 54_36p 1 reviewed nonsense c.2374 p.R792* NULL - - no_errors CDH10 1008 genome.wustl.edu 36 5 24547225 24547225 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 5 24547225 24547225 C A SNP CDH10 NM_006727 human genbank 54_36p -1 reviewed missense c.970 p.D324Y 1 HMMPfam_Cadherin HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like - no_errors PMCHL2 5370 genome.wustl.edu 36 5 70707956 70707956 + RNA SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 5 70707956 70707956 C T SNP PMCHL2 NR_003922 human genbank 54_36p 1 validated rna NULL NULL 0.96 - - - pseudogene RGNEF 64283 genome.wustl.edu 36 5 73178047 73178047 + Silent SNP A G G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 A A G G A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 5 73178047 73178047 A G SNP RGNEF NM_001080479 human genbank 54_36p 1 provisional silent c.1626 p.L542 0.98 NULL - - no_errors HIVEP1 3096 genome.wustl.edu 36 6 12230760 12230760 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 6 12230760 12230760 G A SNP HIVEP1 NM_002114 human genbank 54_36p 1 validated missense c.2746 p.G916R 0.074 NULL - - no_errors RNF182 221687 genome.wustl.edu 36 6 14086034 14086034 + Silent SNP T T C novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 6 14086034 14086034 T C SNP RNF182 NM_152737 human genbank 54_36p 1 provisional silent c.705 p.V235 0.9 NULL - - no_errors GABBR1 2550 genome.wustl.edu 36 6 29696888 29696888 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 6 29696888 29696888 T C SNP GABBR1 NM_001470 human genbank 54_36p -1 reviewed missense c.1292 p.N431S 1 HMMPfam_ANF_receptor HMMPfam_7tm_3;HMMPfam_Sushi;HMMPfam_ANF_receptor;superfamily_Periplasmic binding protein-like I;superfamily_Complement control module/SCR domain - no_errors B3GALT4 8705 genome.wustl.edu 36 6 33353260 33353260 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 6 33353260 33353260 G T SNP B3GALT4 NM_003782 human genbank 54_36p 1 reviewed missense c.86 p.G29V 0.05 NULL HMMPfam_Galactosyl_T - no_errors BAK1 578 genome.wustl.edu 36 6 33651640 33651640 + Silent SNP G G A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 6 33651640 33651640 G A SNP BAK1 NM_001188 human genbank 54_36p -1 reviewed silent c.114 p.Y38 1 NULL - - no_errors GPR22 2845 genome.wustl.edu 36 7 106901798 106901798 + Silent SNP G G A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 7 106901798 106901798 G A SNP GPR22 NM_005295 human genbank 54_36p 1 reviewed silent c.57 p.V19 1 NULL HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like - no_errors C7orf58 79974 genome.wustl.edu 36 7 120555707 120555707 + Silent SNP G G C novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 7 120555707 120555707 G C SNP C7orf58 NM_024913 human genbank 54_36p 1 validated silent c.1338 p.L446 0.9 NULL - - no_errors EPHA1 2041 genome.wustl.edu 36 7 142802352 142802352 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 7 142802352 142802352 A G SNP EPHA1 NM_005232 human genbank 54_36p -1 reviewed missense c.2129 p.L710P 1 HMMPfam_Pkinase_Tyr Ephrin_lbd;HMMPfam_Ephrin_lbd;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;SAM_1;HMMPfam_SAM_1;fn3;HMMPfam_fn3 - no_errors NPVF 64111 genome.wustl.edu 36 7 25234538 25234538 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 7 25234538 25234538 T A SNP NPVF NM_022150 human genbank 54_36p -1 validated missense c.46 p.T16S 1 NULL - - no_errors PCLO 27445 genome.wustl.edu 36 7 82384027 82384027 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 T T T A T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 7 82384027 82384027 T A SNP PCLO NM_033026 human genbank 54_36p -1 validated missense c.11211 p.Q3737H 1 NULL - - no_errors PENK 5179 genome.wustl.edu 36 8 57516417 57516417 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 8 57516417 57516417 C G SNP PENK NM_006211 human genbank 54_36p -1 validated missense c.772 p.E258Q 1 NULL HMMPfam_Opiods_neuropep - no_errors SETX 23064 genome.wustl.edu 36 9 134211475 134211475 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 9 134211475 134211475 G T SNP SETX NM_015046 human genbank 54_36p -1 reviewed missense c.382 p.R128S 1 NULL superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors DHRSX 207063 genome.wustl.edu 36 X 2336807 2336807 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 X 2336807 2336807 C T SNP DHRSX NM_145177 human genbank 54_36p -1 validated missense c.265 p.E89K 0.03 HMMPfam_adh_short HMMPfam_adh_short;superfamily_NAD(P)-binding Rossmann-fold domains - no_errors MXRA5 25878 genome.wustl.edu 36 X 3251268 3251268 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 X 3251268 3251268 G A SNP MXRA5 NM_015419 human genbank 54_36p -1 validated missense c.2458 p.P820S 0 NULL HMMPfam_LRR_1,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like - no_errors UBQLN2 29978 genome.wustl.edu 36 X 56607897 56607897 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 X 56607897 56607897 G T SNP UBQLN2 NM_013444 human genbank 54_36p 1 reviewed missense c.866 p.G289V 0.997 NULL HMMPfam_UBA,HMMPfam_ubiquitin,superfamily_UBA-like,superfamily_XPC-binding domain,superfamily_ARM repeat,superfamily_Ubiquitin-like - no_errors LPAR4 2846 genome.wustl.edu 36 X 77897941 77897941 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1470-01A-01W-0553-09 TCGA-24-1470-10A-01W-0553-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 1d2bf111-910b-4ce9-8638-ab992b414e65 60102268-7f80-4d74-aab6-a2cdd0f221d6 X 77897941 77897941 G T SNP LPAR4 NM_005296 human genbank 54_36p 1 reviewed missense c.919 p.D307Y 1 NULL - - no_errors