Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error FAM40A 85369 genome.wustl.edu 36 1 110389166 110389166 + Silent SNP G G A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 1 110389166 110389166 G A SNP FAM40A NM_033088 human genbank 54_36p 1 validated silent c.1359 p.T453 0.79 NULL - - no_errors NUP210L 91181 genome.wustl.edu 36 1 152285218 152285218 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 1 152285218 152285218 C A SNP NUP210L NM_207308 human genbank 54_36p -1 validated missense c.3647 p.W1216L 1 NULL - - no_errors UAP1 6675 genome.wustl.edu 36 1 160835707 160835707 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 1 160835707 160835707 A G SNP UAP1 NM_003115 human genbank 54_36p 1 validated missense c.1448 p.D483G 1 NULL HMMPfam_UDPGP;superfamily_Nucleotide-diphospho-sugar transferases - no_errors SERPINC1 462 genome.wustl.edu 36 1 172139768 172139768 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 1 172139768 172139768 G A SNP SERPINC1 NM_000488 human genbank 54_36p -1 validated missense c.1277 p.S426L 1 NULL - - no_errors PAPPA2 60676 genome.wustl.edu 36 1 174935189 174935189 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 1 174935189 174935189 A G SNP PAPPA2 NM_020318 human genbank 54_36p 1 validated missense c.3077 p.D1026G 1 NULL - - no_errors NLRP3 114548 genome.wustl.edu 36 1 245673982 245673982 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 1 245673982 245673982 C G SNP NLRP3 NM_001079821 human genbank 54_36p 1 reviewed missense c.2755 p.L919V 0.33 NULL - - no_errors MIER1 57708 genome.wustl.edu 36 1 67184458 67184458 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 1 67184458 67184458 A G SNP MIER1 NM_020948 human genbank 54_36p 1 validated missense c.143 p.H48R 1 NULL - - pseudogene:no_stop_codon:bad_bp_length_for_coding_region SVIL 6840 genome.wustl.edu 36 10 29813712 29813712 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 10 29813712 29813712 T A SNP SVIL NM_021738 human genbank 54_36p -1 reviewed missense c.4834 p.T1612S 1 NULL HMMPfam_VHP;superfamily_VHP Villin headpiece domain;HMMPfam_Gelsolin;superfamily_Actin depolymerizing proteins - no_errors DUPD1 338599 genome.wustl.edu 36 10 76488091 76488091 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 10 76488091 76488091 T C SNP DUPD1 NM_001003892 human genbank 54_36p -1 provisional missense c.188 p.Y63C 1 HMMPfam_DSPc HMMPfam_DSPc;superfamily_(Phosphotyrosine protein) phosphatases II - no_errors ASAM 79827 genome.wustl.edu 36 11 122459124 122459124 + Silent SNP G G A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 11 122459124 122459124 G A SNP ASAM NM_024769 human genbank 54_36p -1 validated silent c.558 p.D186 1 NULL - - no_errors KRTAP5-3 387266 genome.wustl.edu 36 11 1585657 1585657 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 11 1585657 1585657 C A SNP KRTAP5-3 NM_001012708 human genbank 54_36p -1 validated missense c.535 p.G179C 0.18 HMMPfam_Keratin_B2 HMMPfam_Keratin_B2 - no_errors SPRYD5 84767 genome.wustl.edu 36 11 55409881 55409881 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 11 55409881 55409881 A T SNP SPRYD5 ENST00000327733 human ensembl 54_36p 1 known missense c.422 p.E141V 0.947 NULL HMMPfam_zf-B_box,HMMPfam_zf-C3HC4,HMMPfam_SPRY,superfamily_SSF57850 - no_start_codon TAS2R50 259296 genome.wustl.edu 36 12 11030719 11030719 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 12 11030719 11030719 G C SNP TAS2R50 NM_176890 human genbank 54_36p -1 validated missense c.8 p.T3S HMMPfam_TAS2R HMMPfam_TAS2R;superfamily_Family A G protein-coupled receptor-like - no_errors MLXIP 22877 genome.wustl.edu 36 12 121180101 121180101 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 12 121180101 121180101 A G SNP MLXIP ENST00000319080 human ensembl 54_36p 1 known missense c.709 p.K237E 1 NULL HMMPfam_HLH;superfamily_HLH helix-loop-helix DNA-binding domain - no_errors SLCO1A2 6579 genome.wustl.edu 36 12 21363579 21363579 + Silent SNP C C T novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 12 21363579 21363579 C T SNP SLCO1A2 ENST00000390670 human ensembl 54_36p -1 known silent c.48 p.S16 NULL - - no_errors LOC400036 400036 genome.wustl.edu 36 12 51411523 51411523 + RNA SNP G G A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 12 51411523 51411523 G A SNP LOC400036 XR_042304 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene OS9 10956 genome.wustl.edu 36 12 56400183 56400183 + Silent SNP C C A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 12 56400183 56400183 C A SNP OS9 NM_006812 human genbank 54_36p 1 reviewed silent c.1635 p.V545 1 NULL superfamily_Mannose 6-phosphate receptor domain;HMMPfam_PRKCSH - no_errors DCLK1 9201 genome.wustl.edu 36 13 35322904 35322904 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 13 35322904 35322904 G A SNP DCAMKL1 ENST00000379892 human ensembl 54_36p -1 known missense c.1045 p.R349C 1 NULL - - no_errors SPRY2 10253 genome.wustl.edu 36 13 79809658 79809658 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 13 79809658 79809658 C T SNP SPRY2 NM_005842 human genbank 54_36p -1 reviewed missense c.184 p.V62I 1 HMMPfam_Sprouty HMMPfam_Sprouty - no_errors RAGE 5891 genome.wustl.edu 36 14 101768721 101768721 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 14 101768721 101768721 T G SNP RAGE NM_014226 human genbank 54_36p -1 provisional missense c.770 p.Q257P 0.03 NULL - - no_errors BAG5 9529 genome.wustl.edu 36 14 103096679 103096679 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 14 103096679 103096679 C A SNP BAG5 NM_001015049 human genbank 54_36p -1 reviewed missense c.699 p.E233D 0.98 HMMPfam_BAG HMMPfam_BAG;superfamily_BAG domain - no_errors GLCE 26035 genome.wustl.edu 36 15 67347845 67347845 + Silent SNP G G T novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 15 67347845 67347845 G T SNP GLCE NM_015554 human genbank 54_36p 1 validated silent c.1062 p.L354 1 NULL HMMPfam_C5-epim_C - no_errors THSD4 79875 genome.wustl.edu 36 15 69837379 69837379 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 15 69837379 69837379 T G SNP THSD4 NM_024817 human genbank 54_36p 1 provisional missense c.2500 p.C834G 1 NULL - - no_errors PRDM7 11105 genome.wustl.edu 36 16 88655965 88655965 + Silent SNP C C T novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 16 88655965 88655965 C T SNP PRDM7 NM_001098173 human genbank 54_36p -1 reviewed silent c.747 p.G249 0.43 NULL - - no_errors TP53 7157 genome.wustl.edu 36 17 7517577 7517577 + Splice_Site SNP C C G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C Verified Unknown Somatic Phase_III PCR Sanger_PCR_WGA dbGAP ABI 3730xl adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 17 7517577 7517577 C G SNP TP53 NM_000546 human genbank 54_36p -1 reviewed splice_site c.993+1 e8+1 0.99 - - - no_errors PIK3C3 5289 genome.wustl.edu 36 18 37854608 37854608 + Silent SNP C C A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 18 37854608 37854608 C A SNP PIK3C3 NM_002647 human genbank 54_36p 1 validated silent c.1425 p.L475 1 HMMPfam_PI3Ka superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_Protein kinase-like (PK-like);superfamily_ARM repeat;PI3_PI4_kinase;HMMPfam_PI3_PI4_kinase;PI3Ka;HMMPfam_PI3Ka;PI3K_C2;HMMPfam_PI3K_C2 - no_errors ANO8 57719 genome.wustl.edu 36 19 17296902 17296902 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 19 17296902 17296902 C G SNP ANO8 NM_020959 human genbank 54_36p -1 provisional missense c.2955 p.Q985H 1 NULL - - no_errors ZBTB32 27033 genome.wustl.edu 36 19 40899342 40899342 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 19 40899342 40899342 C A SNP ZBTB32 NM_014383 human genbank 54_36p 1 provisional missense c.1312 p.P438T 1 NULL - - no_errors SIGLEC12 89858 genome.wustl.edu 36 19 56693200 56693200 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 19 56693200 56693200 A G SNP SIGLEC12 NM_053003 human genbank 54_36p -1 reviewed missense c.1289 p.V430A HMMPfam_ig HMMPfam_V-set;HMMPfam_ig;HMMPfam_C2-set_2;superfamily_Immunoglobulin - no_errors ZNF615 284370 genome.wustl.edu 36 19 57189366 57189366 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 19 57189366 57189366 G A SNP ZNF615 NM_198480 human genbank 54_36p -1 provisional missense c.775 p.H259Y 0.95 NULL HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers - no_errors LILRB4 11006 genome.wustl.edu 36 19 59871015 59871015 + Nonsense_Mutation SNP A A T novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 19 59871015 59871015 A T SNP LILRB4 NM_006847 human genbank 54_36p 1 reviewed nonsense c.1159 p.K387* NULL HMMPfam_ig;superfamily_Immunoglobulin - no_errors ABCB11 8647 genome.wustl.edu 36 2 169509662 169509662 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 A A A G A A Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 2 169509662 169509662 A G SNP ABCB11 NM_003742 human genbank 54_36p -1 reviewed missense c.2399 p.L800P 0.99 HMMPfam_ABC_membrane HMMPfam_ABC_membrane;HMMPfam_ABC_tran;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain - no_errors ST13P2 344328 genome.wustl.edu 36 2 188399039 188399039 + RNA SNP A A G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 2 188399039 188399039 A G SNP LOC344328 XR_017370 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene KIAA1755 85449 genome.wustl.edu 36 20 36288975 36288975 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 20 36288975 36288975 C T SNP KIAA1755 NM_001029864 human genbank 54_36p -1 predicted missense c.2047 p.V683I 0.01 NULL - - no_errors PATZ1 23598 genome.wustl.edu 36 22 30061753 30061753 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 22 30061753 30061753 G A SNP PATZ1 NM_014323 human genbank 54_36p -1 reviewed missense c.1432 p.R478W 1 NULL HMMPfam_AT_hook,HMMPfam_zf-C2H2,HMMPfam_BTB,superfamily_POZ domain,superfamily_C2H2 and C2HC zinc fingers - no_errors PLD1 5337 genome.wustl.edu 36 3 172820934 172820934 + Silent SNP T T C novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 3 172820934 172820934 T C SNP PLD1 NM_002662 human genbank 54_36p -1 validated silent c.2664 p.L888 0.86 NULL HMMPfam_PX;HMMPfam_PLDc;HMMPfam_PH;superfamily_PH domain-like;superfamily_Phospholipase D/nuclease;superfamily_PX domain - no_errors LAMB2 3913 genome.wustl.edu 36 3 49134427 49134427 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 3 49134427 49134427 C G SNP LAMB2 NM_002292 human genbank 54_36p -1 reviewed missense c.4877 p.R1626P NULL HMMPfam_Laminin_EGF;HMMPfam_Laminin_N;superfamily_Galactose-binding domain-like;superfamily_Spectrin repeat;superfamily_EGF/Laminin - no_errors SLIT2 9353 genome.wustl.edu 36 4 20228322 20228322 + Silent SNP G A G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 G G A G G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 4 20228322 20228322 G A SNP SLIT2 NM_004787 human genbank 54_36p 1 provisional silent c.4299 p.Q1433 1 HMMPfam_EGF superfamily_L domain-like;superfamily_EGF/Laminin;HMMPfam_LRRNT;HMMPfam_LRRCT;HMMPfam_LRR_1;HMMPfam_EGF;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_2 - no_errors GPR78 27201 genome.wustl.edu 36 4 8633792 8633792 + Silent SNP C T T novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 4 8633792 8633792 C T SNP GPR78 NM_080819 human genbank 54_36p 1 validated silent c.183 p.P61 0.99 HMMPfam_7tm_1 7tm_1;HMMPfam_7tm_1;Family A G protein-coupled receptor-like;superfamily_Family A G protein-coupled receptor-like - no_errors C5orf22 55322 genome.wustl.edu 36 5 31574387 31574387 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 5 31574387 31574387 C G SNP C5orf22 NM_018356 human genbank 54_36p 1 validated missense c.641 p.T214S 0.08 NULL - - no_errors TRIM23 373 genome.wustl.edu 36 5 64945746 64945746 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 5 64945746 64945746 G A SNP TRIM23 NM_001656 human genbank 54_36p -1 reviewed nonsense c.301 p.R101* 1 NULL superfamily_RING/U-box;HMMPfam_zf-B_box;HMMPfam_zf-C3HC4;HMMPfam_Arf;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_C2H2 and C2HC zinc fingers - no_errors GPLD1 2822 genome.wustl.edu 36 6 24570970 24570970 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 6 24570970 24570970 A G SNP GPLD1 NM_001503 human genbank 54_36p -1 reviewed missense c.854 p.I285T 0.91 NULL HMMPfam_FG-GAP;superfamily_Integrin alpha N-terminal domain - no_errors CDC5L 988 genome.wustl.edu 36 6 44502419 44502419 + Frame_Shift_Del DEL T T - Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 T T T - T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 6 44502419 44502419 T - DEL CDC5L NM_001253 human genbank 54_36p 1 reviewed frame_shift_del c.1873 p.S625fs 1 NULL superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding (deletion:cds_exon[44502197,44502439]) no_errors ABCB4 5244 genome.wustl.edu 36 7 86873648 86873648 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 7 86873648 86873648 A C SNP ABCB4 NM_018849 human genbank 54_36p -1 reviewed missense c.3399 p.I1133M 1 HMMPfam_ABC_tran HMMPfam_ABC_membrane;HMMPfam_ABC_tran;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain - no_errors ASAP1 50807 genome.wustl.edu 36 8 131193526 131193526 + Silent SNP C C G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 8 131193526 131193526 C G SNP ASAP1 NM_018482 human genbank 54_36p -1 validated silent c.2397 p.G799 1 NULL HMMPfam_ArfGap;superfamily_Pyk2-associated protein beta ARF-GAP domain;HMMPfam_SH3_1;superfamily_SH3-domain;HMMPfam_PH;HMMPfam_Ank;superfamily_Ankyrin repeat;superfamily_PH domain-like - no_errors SGCZ 137868 genome.wustl.edu 36 8 13992458 13992458 + Silent SNP A A T novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 8 13992458 13992458 A T SNP SGCZ NM_139167 human genbank 54_36p -1 reviewed silent c.804 p.S268 0.59 NULL - - no_errors CSMD1 64478 genome.wustl.edu 36 8 2951467 2951467 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 8 2951467 2951467 T A SNP CSMD1 NM_033225 human genbank 54_36p -1 validated missense c.6943 p.N2315Y 0.07 NULL - - pseudogene:no_stop_codon:bad_bp_length_for_coding_region CPA6 57094 genome.wustl.edu 36 8 68502840 68502840 + Silent SNP C C T novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 8 68502840 68502840 C T SNP CPA6 NM_020361 human genbank 54_36p -1 validated silent c.1122 p.T374 0.04 NULL - - no_errors OR13D1 286365 genome.wustl.edu 36 9 106497444 106497444 + Silent SNP G G A novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc 9 106497444 106497444 G A SNP OR13D1 NM_001004484 human genbank 54_36p 1 provisional silent c.921 p.G307 NULL - - no_errors ZNF185 7739 genome.wustl.edu 36 X 151889641 151889641 + Splice_Site SNP A A G novel Unknown TCGA-24-1436-01A-01W-0549-09 TCGA-24-1436-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx adeff0f5-d2a3-41c5-a509-298f702266bb e75949ca-4478-406a-a598-a45d1f0cbefc X 151889641 151889641 A G SNP ZNF185 NM_007150 human genbank 54_36p 1 validated splice_site c.1972-2 e22-2 1 - - - no_errors