Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error STX6 10228 genome.wustl.edu 36 1 179225768 179225768 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 1 179225768 179225768 A G SNP STX6 NM_005819 human genbank 54_36p -1 validated missense c.464 p.I155T 1 NULL - - no_errors RD3 343035 genome.wustl.edu 36 1 209721351 209721351 + Silent SNP G G A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 1 209721351 209721351 G A SNP RD3 NM_183059 human genbank 54_36p -1 validated silent c.30 p.N10 0.98 NULL - - no_errors C1orf173 127254 genome.wustl.edu 36 1 74859093 74859093 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 1 74859093 74859093 G T SNP C1orf173 NM_001002912 human genbank 54_36p -1 predicted missense c.913 p.P305T NULL - - no_errors TGFBR3 7049 genome.wustl.edu 36 1 91958158 91958158 + Silent SNP G G A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 1 91958158 91958158 G A SNP TGFBR3 NM_003243 human genbank 54_36p -1 validated silent c.1293 p.S431 NULL HMMPfam_Zona_pellucida - no_errors SFMBT2 57713 genome.wustl.edu 36 10 7279543 7279543 + Silent SNP C C G novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 10 7279543 7279543 C G SNP SFMBT2 NM_001029880 human genbank 54_36p -1 provisional silent c.1671 p.P557 0.82 NULL - - no_errors KIN 22944 genome.wustl.edu 36 10 7862042 7862042 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 10 7862042 7862042 T C SNP KIN NM_012311 human genbank 54_36p -1 reviewed missense c.359 p.K120R 1 NULL - - no_errors ARHGAP20 57569 genome.wustl.edu 36 11 109955919 109955919 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 11 109955919 109955919 G T SNP ARHGAP20 NM_020809 human genbank 54_36p -1 validated missense c.2961 p.D987E 0.01 NULL - - no_errors VWCE 220001 genome.wustl.edu 36 11 60798568 60798568 + Silent SNP C C T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 11 60798568 60798568 C T SNP VWCE NM_152718 human genbank 54_36p -1 validated silent c.1560 p.E520 0.96 NULL - - no_errors FAT3 120114 genome.wustl.edu 36 11 91725185 91725185 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 11 91725185 91725185 G A SNP FAT3 NM_001008781 human genbank 54_36p 1 validated missense c.259 p.D87N 1 NULL - - no_errors ING1 3621 genome.wustl.edu 36 13 110170145 110170145 + Missense_Mutation SNP G T T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 13 110170145 110170145 G T SNP ING1 NM_005537 human genbank 54_36p 1 reviewed missense c.1134 p.W378C 1 HMMPfam_PHD HMMPfam_PHD;superfamily_FYVE/PHD zinc finger - no_errors KIAA1409 57578 genome.wustl.edu 36 14 93149139 93149139 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 14 93149139 93149139 G A SNP KIAA1409 NM_020818 human genbank 54_36p 1 validated missense c.3467 p.R1156H 1 NULL - - no_errors OR4M2 390538 genome.wustl.edu 36 15 19870123 19870123 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 15 19870123 19870123 C A SNP OR4M2 NM_001004719 human genbank 54_36p 1 provisional missense c.184 p.L62M 0.97 NULL - - no_errors CHRNA7 1139 genome.wustl.edu 36 15 30237995 30237995 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 15 30237995 30237995 C T SNP CHRNA7 NM_000746 human genbank 54_36p 1 reviewed missense c.689 p.T230M 1 HMMPfam_Neur_chan_LBD HMMPfam_Neur_chan_memb;HMMPfam_Neur_chan_LBD;superfamily_Nicotinic receptor ligand binding domain-like;superfamily_Neurotransmitter-gated ion-channel transmembrane pore - no_errors C15orf23 90417 genome.wustl.edu 36 15 38471498 38471498 + Silent SNP G G A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 15 38471498 38471498 G A SNP C15orf23 NM_033286 human genbank 54_36p 1 validated silent c.804 p.K268 1 NULL - - no_errors CDH8 1006 genome.wustl.edu 36 16 60247008 60247008 + Silent SNP G G T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 16 60247008 60247008 G T SNP CDH8 NM_001796 human genbank 54_36p -1 reviewed silent c.1773 p.T591 1 HMMPfam_Cadherin HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like - no_errors LOC728341 728341 genome.wustl.edu 36 17 36685561 36685561 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 17 36685561 36685561 G A SNP LOC728341 XM_001127251 human genbank 54_36p 1 model missense c.86 p.S29N 0 NULL - - no_errors HAP1 9001 genome.wustl.edu 36 17 37142537 37142537 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 17 37142537 37142537 G C SNP HAP1 NM_177977 human genbank 54_36p -1 reviewed missense c.509 p.T170S 0.98 NULL - - no_errors TP53 7157 genome.wustl.edu 36 17 7518990 7518990 + Missense_Mutation SNP A G G novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 A A G G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 17 7518990 7518990 A G SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.584 p.I195T 1 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors MIB1 57534 genome.wustl.edu 36 18 17683210 17683210 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 18 17683210 17683210 G C SNP MIB1 NM_020774 human genbank 54_36p 1 validated missense c.2449 p.E817Q 1 NULL - - no_errors LOC100128765 100128765 genome.wustl.edu 36 13 18601176 18601176 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 13 18601176 18601176 G T SNP LOC100128765 XM_001714904 human genbank 54_36p 1 model missense c.279 p.W93C 0.67 NULL - - no_errors ZNF492 57615 genome.wustl.edu 36 19 22609118 22609118 + Splice_Site SNP T T A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 19 22609118 22609118 T A SNP ZNF492 NM_020855 human genbank 54_36p 1 validated splice_site c.1+2 e0+2 0 - - - no_errors LCT 3938 genome.wustl.edu 36 2 136311151 136311151 + Nonsense_Mutation SNP G G T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 2 136311151 136311151 G T SNP LCT NM_002299 human genbank 54_36p -1 reviewed nonsense c.59 p.S20* 0.01 NULL HMMPfam_Glyco_hydro_1;superfamily_(Trans)glycosidases - no_errors NRXN1 9378 genome.wustl.edu 36 2 50002704 50002704 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 2 50002704 50002704 C A SNP NRXN1 NM_004801 human genbank 54_36p -1 reviewed missense c.4316 p.R1439L 1 NULL HMMPfam_EGF;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_2;superfamily_EGF/Laminin - no_errors ETAA1 54465 genome.wustl.edu 36 2 67490599 67490599 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 2 67490599 67490599 A T SNP ETAA1 NM_019002 human genbank 54_36p 1 validated missense c.2706 p.R902S 1 NULL - - no_errors CEP250 11190 genome.wustl.edu 36 20 33555271 33555271 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 20 33555271 33555271 A G SNP CEP250 NM_007186 human genbank 54_36p 1 reviewed missense c.5660 p.E1887G 0.933 NULL - - no_errors PTPRT 11122 genome.wustl.edu 36 20 40204018 40204018 + Silent SNP G G A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 20 40204018 40204018 G A SNP PTPRT NM_133170 human genbank 54_36p -1 reviewed silent c.2778 p.A926 1 NULL - - no_errors IGL@ 3535 genome.wustl.edu 36 22 21385635 21385635 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 22 21385635 21385635 G C SNP IGL@ ENST00000390308 human ensembl 54_36p 1 known missense c.298 p.D100H 1 NULL - - no_stop_codon:bad_bp_length_for_coding_region RG9MTD1 54931 genome.wustl.edu 36 3 102767100 102767100 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 3 102767100 102767100 A G SNP RG9MTD1 NM_017819 human genbank 54_36p 1 provisional missense c.785 p.Y262C 1 NULL - - no_errors SI 6476 genome.wustl.edu 36 3 166259699 166259699 + Missense_Mutation SNP T C T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 T T C T T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 3 166259699 166259699 T C SNP SI NM_001041 human genbank 54_36p -1 validated missense c.1229 p.Q410R 0.09 HMMPfam_Glyco_hydro_31 HMMPfam_Glyco_hydro_31;HMMPfam_Trefoil;superfamily_Trefoil;superfamily_(Trans)glycosidases - no_errors DOCK3 1795 genome.wustl.edu 36 3 51249982 51249982 + Nonsense_Mutation SNP C C T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 3 51249982 51249982 C T SNP DOCK3 NM_004947 human genbank 54_36p 1 validated nonsense c.2023 p.R675* 1 NULL Ded_cyto;HMMPfam_Ded_cyto;SH3_2;HMMPfam_SH3_2 - no_errors CASP6 839 genome.wustl.edu 36 4 110838932 110838932 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 4 110838932 110838932 A C SNP CASP6 NM_001226 human genbank 54_36p -1 reviewed missense c.56 p.M19R 0.74 NULL HMMPfam_Peptidase_C14;superfamily_Caspase-like - no_errors ANP32C 23520 genome.wustl.edu 36 4 165338253 165338253 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 4 165338253 165338253 C T SNP ANP32C NM_012403 human genbank 54_36p -1 reviewed missense c.61 p.E21K 1 NULL - - no_errors FAM193A 8603 genome.wustl.edu 36 4 2631482 2631482 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 4 2631482 2631482 G A SNP C4orf8 NM_003704 human genbank 54_36p 1 validated missense c.775 p.V259M 1 NULL - - no_errors PCDH7 5099 genome.wustl.edu 36 4 30335169 30335169 + Silent SNP C C T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 4 30335169 30335169 C T SNP PCDH7 NM_032457 human genbank 54_36p 1 reviewed silent c.2886 p.P962 0.99 HMMPfam_Protocadherin HMMPfam_Cadherin;HMMPfam_Cadherin_2;HMMPfam_Protocadherin;superfamily_Cadherin-like - no_errors AMBN 258 genome.wustl.edu 36 4 71506708 71506708 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 4 71506708 71506708 C A SNP AMBN NM_016519 human genbank 54_36p 1 reviewed missense c.1016 p.P339Q 0.04 NULL - - no_errors STBD1 8987 genome.wustl.edu 36 4 77449958 77449958 + Missense_Mutation SNP C C A Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C C A C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 4 77449958 77449958 C A SNP STBD1 NM_003943 human genbank 54_36p 1 validated missense c.858 p.D286E 1 NULL - - no_errors IL13 3596 genome.wustl.edu 36 5 132021929 132021929 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 5 132021929 132021929 T G SNP IL13 NM_002188 human genbank 54_36p 1 reviewed missense c.152 p.V51G 0.032 HMMPfam_IL13 HMMPfam_IL13,superfamily_4-helical cytokines - no_errors PCDHB13 56123 genome.wustl.edu 36 5 140576064 140576064 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 5 140576064 140576064 G A SNP PCDHB13 NM_018933 human genbank 54_36p 1 reviewed missense c.2185 p.E729K 0 NULL - - no_errors OR2V2 285659 genome.wustl.edu 36 5 180514948 180514948 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 5 180514948 180514948 C A SNP OR2V2 NM_206880 human genbank 54_36p 1 provisional missense c.400 p.P134T 0.97 NULL - - no_errors GZMA 3001 genome.wustl.edu 36 5 54439842 54439842 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 5 54439842 54439842 G A SNP GZMA NM_006144 human genbank 54_36p 1 reviewed missense c.490 p.D164N 0.02 NULL - - no_errors VCAN 1462 genome.wustl.edu 36 5 82872381 82872381 + Silent SNP A A C novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 5 82872381 82872381 A C SNP VCAN NM_004385 human genbank 54_36p 1 validated silent c.7803 p.V2601 NULL HMMPfam_Sushi;HMMPfam_Xlink;HMMPfam_Lectin_C;HMMPfam_EGF;HMMPfam_V-set;superfamily_Immunoglobulin;superfamily_C-type lectin-like;superfamily_EGF/Laminin;superfamily_Complement control module/SCR domain - no_errors OR12D2 26529 genome.wustl.edu 36 6 29473164 29473164 + Silent SNP C C T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 6 29473164 29473164 C T SNP OR12D2 NM_013936 human genbank 54_36p 1 reviewed silent c.709 p.L237 0.737 NULL - - no_errors KCNK16 83795 genome.wustl.edu 36 6 39393578 39393578 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 6 39393578 39393578 C T SNP KCNK16 NM_032115 human genbank 54_36p -1 reviewed missense c.457 p.A153T NULL - - no_errors RINT1 60561 genome.wustl.edu 36 7 104974660 104974660 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 7 104974660 104974660 G T SNP RINT1 NM_021930 human genbank 54_36p 1 validated missense c.583 p.A195S 1 NULL RINT1_TIP1;HMMPfam_RINT1_TIP1 - no_errors SLC26A4 5172 genome.wustl.edu 36 7 107129654 107129654 + Silent SNP T T C novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 7 107129654 107129654 T C SNP SLC26A4 NM_000441 human genbank 54_36p 1 reviewed silent c.1950 p.V650 0.99 HMMPfam_STAS HMMPfam_STAS;superfamily_Anti-sigma factor antagonist SpoIIaa;HMMPfam_Sulfate_transp - no_errors LOC100132804 100132804 genome.wustl.edu 36 7 143976549 143976549 + RNA SNP G G A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 7 143976549 143976549 G A SNP LOC100132804 XR_038193 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene CCDC132 55610 genome.wustl.edu 36 7 92823274 92823274 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 7 92823274 92823274 T G SNP CCDC132 NM_017667 human genbank 54_36p 1 validated missense c.2721 p.I907M 1 NULL - - no_errors LOC646127 646127 genome.wustl.edu 36 X 74464243 74464243 + RNA SNP C C T novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 X 74464243 74464243 C T SNP LOC646127 XR_037591 human genbank 54_36p -1 model rna NULL NULL 0.03 - - - pseudogene SLC7A2 6542 genome.wustl.edu 36 8 17452228 17452228 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 8 17452228 17452228 G C SNP SLC7A2 NM_003046 human genbank 54_36p 1 validated missense c.859 p.G287R 1 NULL - - no_errors ENSG00000211635 0 genome.wustl.edu 36 2 89897347 89897347 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 2 89897347 89897347 C G SNP ENSG00000211635 ENST00000390280 human ensembl 54_36p 1 known missense c.145 p.Q49E 0.02 NULL - - no_stop_codon:bad_bp_length_for_coding_region GNA14 9630 genome.wustl.edu 36 9 79239201 79239201 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 9 79239201 79239201 C A SNP GNA14 NM_004297 human genbank 54_36p -1 reviewed nonsense c.367 p.E123* 0.98 HMMPfam_G-alpha HMMPfam_G-alpha;superfamily_Transducin (alpha subunit) insertion domain;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors COL4A5 1287 genome.wustl.edu 36 X 107570073 107570073 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 X 107570073 107570073 G A SNP COL4A5 NM_033380 human genbank 54_36p 1 reviewed missense c.62 p.G21E 1 NULL - - no_errors MAGEC2 51438 genome.wustl.edu 36 X 141118730 141118730 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 X 141118730 141118730 A G SNP MAGEC2 NM_016249 human genbank 54_36p -1 reviewed missense c.710 p.I237T 0.08 HMMPfam_MAGE HMMPfam_MAGE - no_errors EVI5 7813 genome.wustl.edu 36 1 92941593 92941594 + Missense_Mutation DNP AG AG GA novel Unknown TCGA-24-1424-01A-01W-0549-09 TCGA-24-1424-10A-01W-0549-09 AG AG AG GA AG AG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2849f3e8-85d8-4d42-953b-3190b0ca98fc f45cf26e-8090-4aa2-94e7-9f6dbf1dcd41 1 92941593 92941594 AG GA DNP EVI5 NM_005665 human genbank 54_36p -1 validated missense c.643_642 p.F215L 1.000:0.986 superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164 superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164 - no_errors