Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error MUC6 4588 genome.wustl.edu 36 11 1006960 1006960 + Silent SNP G G T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 11 1006960 1006960 G T SNP MUC6 NM_005961 human genbank 54_36p -1 validated silent c.5841 p.T1947 0.002 NULL HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00215,HMMSmart_SM00041 - no_errors GMDS 2762 genome.wustl.edu 36 6 1875357 1875357 + Silent SNP G G C novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 6 1875357 1875357 G C SNP GMDS NM_001500 human genbank 54_36p -1 validated silent c.750 p.G250 1.000 superfamily_NAD(P)-bd,HMMPfam_Epimerase superfamily_NAD(P)-bd,HMMPfam_Epimerase - no_errors FOXM1 2305 genome.wustl.edu 36 12 2838605 2838605 + Silent SNP A A G novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 12 2838605 2838605 A G SNP FOXM1 NM_202002 human genbank 54_36p -1 validated silent c.1866 p.P622 0.014 NULL "HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2" - no_errors FGF23 8074 genome.wustl.edu 36 12 4349936 4349936 + Missense_Mutation SNP G G T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 12 4349936 4349936 G T SNP FGF23 NM_020638 human genbank 54_36p -1 reviewed missense c.590 p.A197D 0.250 NULL PatternScan_HBGF_FGF,superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF - no_errors NLGN4X 57502 genome.wustl.edu 36 X 6079176 6079176 + Missense_Mutation SNP G G A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d X 6079176 6079176 G A SNP NLGN4X NM_020742 human genbank 54_36p -1 reviewed missense c.332 p.P111L 1.000 HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2 - no_errors LPCAT3 10162 genome.wustl.edu 36 12 6958035 6958035 + Missense_Mutation SNP C C G novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 12 6958035 6958035 C G SNP LPCAT3 NM_005768 human genbank 54_36p -1 validated missense c.864 p.W288C 1.000 HMMPfam_MBOAT HMMPfam_MBOAT - no_errors NLRP14 338323 genome.wustl.edu 36 11 7048166 7048166 + Missense_Mutation SNP A A C novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 11 7048166 7048166 A C SNP NLRP14 NM_176822 human genbank 54_36p +1 reviewed missense c.3049 p.I1017L 0.159 superfamily_SSF52047 superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047 - no_errors A2BP1 54715 genome.wustl.edu 36 16 7323022 7323022 + Missense_Mutation SNP G G T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 16 7323022 7323022 G T SNP A2BP1 NM_145891 human genbank 54_36p +1 reviewed missense c.19 p.V7F 1.000 NULL superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1 - no_errors C16orf72 29035 genome.wustl.edu 36 16 9094348 9094348 + Missense_Mutation SNP A A G novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 16 9094348 9094348 A G SNP C16orf72 NM_014117 human genbank 54_36p +1 validated missense c.296 p.N99S 1.000 NULL NULL - no_errors COL5A3 50509 genome.wustl.edu 36 19 9977775 9977775 + Missense_Mutation SNP C C G novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 19 9977775 9977775 C G SNP COL5A3 NM_015719 human genbank 54_36p -1 reviewed missense c.221 p.G74A 0.433 HMMSmart_SM00210 HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI - no_errors ICAM5 7087 genome.wustl.edu 36 19 10265451 10265451 + Missense_Mutation SNP G G C novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 19 10265451 10265451 G C SNP ICAM5 NM_003259 human genbank 54_36p +1 reviewed missense c.1543 p.V515L 0.333 superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig HMMPfam_ICAM_N,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,HMMPfam_I-set - no_errors C3orf20 84077 genome.wustl.edu 36 3 14744981 14744981 + Missense_Mutation SNP G G C novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 3 14744981 14744981 G C SNP C3orf20 NM_032137 human genbank 54_36p +1 predicted missense c.1722 p.K574N 0.000 NULL NULL - no_errors MRGPRX3 117195 genome.wustl.edu 36 11 18115953 18115953 + Missense_Mutation SNP C C A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 11 18115953 18115953 C A SNP MRGPRX3 NM_054031 human genbank 54_36p +1 provisional missense c.628 p.P210T 0.001 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors OR4K17 390436 genome.wustl.edu 36 14 19656121 19656121 + Missense_Mutation SNP T T A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 14 19656121 19656121 T A SNP OR4K17 NM_001004715 human genbank 54_36p +1 provisional missense c.716 p.L239Q 0.014 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors PLA2G5 5322 genome.wustl.edu 36 1 20285199 20285199 + Missense_Mutation SNP A A G novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 1 20285199 20285199 A G SNP PLA2G5 NM_000929 human genbank 54_36p +1 reviewed missense c.77 p.K26R 0.006 superfamily_PhospholipaseA2,HMMPfam_Phospholip_A2_1,HMMSmart_PA2c superfamily_PhospholipaseA2,HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,PatternScan_PA2_HIS,PatternScan_PA2_ASP - no_errors PDLIM2 64236 genome.wustl.edu 36 8 22498823 22498823 + Missense_Mutation SNP G G C novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 8 22498823 22498823 G C SNP PDLIM2 NM_176871 human genbank 54_36p +1 validated missense c.506 p.R169P 0.000 NULL HMMPfam_PDZ,superfamily_PDZ,HMMSmart_PDZ,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM - no_errors DDX53 168400 genome.wustl.edu 36 X 22929029 22929029 + Missense_Mutation SNP G G A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d X 22929029 22929029 G A SNP DDX53 NM_182699 human genbank 54_36p +1 validated missense c.934 p.V312M 0.913 superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C - no_errors SEZ6L 23544 genome.wustl.edu 36 22 25018766 25018766 + Missense_Mutation SNP G G T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 22 25018766 25018766 G T SNP SEZ6L NM_021115 human genbank 54_36p +1 validated missense c.489 p.K163N 0.374 NULL superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB - no_errors ZDHHC18 84243 genome.wustl.edu 36 1 27052871 27052871 + Missense_Mutation SNP C C G novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 1 27052871 27052871 C G SNP ZDHHC18 NM_032283 human genbank 54_36p +1 provisional missense c.1117 p.P373A 0.972 NULL HMMPfam_zf-DHHC - no_errors C16orf58 64755 genome.wustl.edu 36 16 31410878 31410878 + Missense_Mutation SNP T T C novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 16 31410878 31410878 T C SNP C16orf58 NM_022744 human genbank 54_36p -1 predicted missense c.1262 p.K421R 0.131 HMMPfam_DUF647 HMMPfam_DUF647 - no_errors SYNJ1 8867 genome.wustl.edu 36 21 32960308 32960308 + Missense_Mutation SNP G G A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 21 32960308 32960308 G A SNP SYNJ1 NM_003895 human genbank 54_36p -1 validated missense c.1961 p.A654V 1.000 superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos HMMPfam_Syja_N,superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,HMMPfam_DUF1866,superfamily_RNA-binding domain RBD - no_errors COL8A2 1296 genome.wustl.edu 36 1 36335833 36335833 + Missense_Mutation SNP G G A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 1 36335833 36335833 G A SNP COL8A2 NM_005202 human genbank 54_36p -1 validated missense c.2036 p.S679L 1.000 HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q HMMPfam_Collagen,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q - no_errors UBTF 7343 genome.wustl.edu 36 17 39643990 39643990 + Silent SNP G G A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 17 39643990 39643990 G A SNP UBTF NM_014233 human genbank 54_36p -1 validated silent c.1146 p.I382 1.000 superfamily_HMG-box superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box - no_errors HNRNPA3P1 10151 genome.wustl.edu 36 10 43604938 43604938 + RNA SNP C C A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 10 43604938 43604938 C A SNP HNRNPA3P1 NR_002726 human genbank 54_36p -1 validated rna NULL NULL 0.998 - - - pseudogene SAMD4B 55095 genome.wustl.edu 36 19 44539476 44539476 + Missense_Mutation SNP C C T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 19 44539476 44539476 C T SNP SAMD4B NM_018028 human genbank 54_36p +1 provisional missense c.103 p.R35C 1.000 NULL HMMSmart_SM00454,HMMPfam_SAM_1,superfamily_SAM/Pointed domain - no_errors POLE2 5427 genome.wustl.edu 36 14 49201583 49201583 + Missense_Mutation SNP T T G novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 14 49201583 49201583 T G SNP POLE2 NM_002692 human genbank 54_36p -1 provisional missense c.625 p.S209R 1.000 NULL HMMPfam_DNA_pol_E_B - no_errors TYMP 1890 genome.wustl.edu 36 22 49312943 49312943 + Missense_Mutation SNP C C T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 22 49312943 49312943 C T SNP TYMP NM_001953 human genbank 54_36p -1 reviewed missense c.586 p.G196R 0.883 superfamily_Glyco_trans_3,HMMPfam_Glycos_transf_3 superfamily_Glyco_trans_3,HMMPfam_Glycos_trans_3N,HMMPfam_Glycos_transf_3,PatternScan_THYMID_PHOSPHORYLASE,superfamily_PYNP_C,HMMPfam_PYNP_C - no_errors GPR4 2828 genome.wustl.edu 36 19 50786176 50786176 + Silent SNP G G A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 19 50786176 50786176 G A SNP GPR4 NM_005282 human genbank 54_36p -1 validated silent c.789 p.R263 0.140 superfamily_SSF81321,HMMPfam_7tm_1 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors WDR7 23335 genome.wustl.edu 36 18 52575289 52575289 + Missense_Mutation SNP C C T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 18 52575289 52575289 C T SNP WDR7 NM_015285 human genbank 54_36p +1 reviewed missense c.2467 p.R823C 1.000 NULL HMMSmart_SM00320,HMMPfam_WD40,superfamily_Prolyl oligopeptidase N-terminal domain,PatternScan_WD_REPEATS_1,superfamily_WD40 repeat-like - no_errors SEPT14 346288 genome.wustl.edu 36 7 55831149 55831149 + Missense_Mutation SNP T T G novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 7 55831149 55831149 T G SNP SEPT14 NM_207366 human genbank 54_36p -1 validated missense c.1250 p.Q417P 0.064 NULL superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Septin - no_errors OR5M9 390162 genome.wustl.edu 36 11 55987010 55987010 + Silent SNP G G C novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 11 55987010 55987010 G C SNP OR5M9 NM_001004743 human genbank 54_36p -1 provisional silent c.444 p.V148 0.015 superfamily_SSF81321,HMMPfam_7tm_1 PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1 - no_errors EXOC3L 283849 genome.wustl.edu 36 16 65780196 65780196 + Missense_Mutation SNP G G A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 16 65780196 65780196 G A SNP EXOC3L NM_178516 human genbank 54_36p -1 validated missense c.356 p.P119L 0.702 NULL HMMPfam_Sec6 - no_errors ANKRA2 57763 genome.wustl.edu 36 5 72892811 72892811 + Silent SNP G G C novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 5 72892811 72892811 G C SNP ANKRA2 NM_023039 human genbank 54_36p -1 provisional silent c.348 p.T116 0.982 NULL superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank - no_errors C11orf67 28971 genome.wustl.edu 36 11 77231283 77231283 + Silent SNP G G T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 11 77231283 77231283 G T SNP C11orf67 NM_024684 human genbank 54_36p +1 predicted silent c.93 p.G31 0.998 superfamily_Hypothetical protein MT938 (MTH938),HMMPfam_DUF498 superfamily_Hypothetical protein MT938 (MTH938),HMMPfam_DUF498 - no_errors LOC646956 646956 genome.wustl.edu 36 15 77316071 77316071 + RNA SNP C C A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 15 77316071 77316071 C A SNP LOC646956 XR_017376 human genbank 54_36p +1 model rna NULL NULL 1.000 - - - pseudogene RIPPLY2 134701 genome.wustl.edu 36 6 84620176 84620176 + Missense_Mutation SNP A A C novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 6 84620176 84620176 A C SNP RIPPLY2 NM_001009994 human genbank 54_36p +1 provisional missense c.139 p.K47Q 0.000 NULL NULL - no_errors ASB2 51676 genome.wustl.edu 36 14 93483491 93483491 + Missense_Mutation SNP C C T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 14 93483491 93483491 C T SNP ASB2 NM_016150 human genbank 54_36p -1 reviewed missense c.865 p.G289S 1.000 superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248 HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank,PatternScan_ODR_DC_2_1,PatternScan_C_TYPE_LECTIN_1,HMMSmart_SM00253,HMMPfam_SOCS_box - no_errors FAM120A 23196 genome.wustl.edu 36 9 95273394 95273394 + Missense_Mutation SNP G G C novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 9 95273394 95273394 G C SNP FAM120A NM_014612 human genbank 54_36p +1 validated missense c.625 p.G209R 1.000 superfamily_PIN domain-like superfamily_PIN domain-like - no_errors JAG2 3714 genome.wustl.edu 36 14 104685720 104685720 + Missense_Mutation SNP T T C novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 14 104685720 104685720 T C SNP JAG2 NM_002226 human genbank 54_36p -1 reviewed missense c.2122 p.T708A 1.000 superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2 HMMPfam_MNNL,HMMPfam_DSL,HMMSmart_SM00051,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMPfam_EGF_CA,HMMSmart_SM00215,HMMSmart_SM00214 - no_errors PPP1R3A 5506 genome.wustl.edu 36 7 113306437 113306437 + Missense_Mutation SNP C C T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 7 113306437 113306437 C T SNP PPP1R3A NM_002711 human genbank 54_36p -1 reviewed missense c.1946 p.S649N 0.000 NULL HMMPfam_CBM_21 - no_errors IL10RA 3587 genome.wustl.edu 36 11 117374690 117374690 + Silent SNP A A T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 11 117374690 117374690 A T SNP IL10RA NM_001558 human genbank 54_36p +1 reviewed silent c.861 p.P287 0.000 NULL HMMPfam_IL10Ra-bind,superfamily_Fibronectin type III - no_errors INPP5F 22876 genome.wustl.edu 36 10 121541030 121541030 + Missense_Mutation SNP G G T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 10 121541030 121541030 G T SNP INPP5F NM_014937 human genbank 54_36p +1 reviewed missense c.327 p.K109N 1.000 HMMPfam_Syja_N HMMPfam_Syja_N - no_errors ACTRT1 139741 genome.wustl.edu 36 X 127012963 127012963 + Missense_Mutation SNP C C A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d X 127012963 127012963 C A SNP ACTRT1 NM_138289 human genbank 54_36p -1 provisional missense c.904 p.G302W 1.000 HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067 HMMPfam_Actin,superfamily_SSF53067,HMMSmart_ACTIN - no_errors GPC3 2719 genome.wustl.edu 36 X 132715407 132715407 + Missense_Mutation SNP C C T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d X 132715407 132715407 C T SNP GPC3 NM_004484 human genbank 54_36p -1 reviewed missense c.800 p.G267E 1.000 HMMPfam_Glypican,PatternScan_GLYPICAN HMMPfam_Glypican,PatternScan_GLYPICAN - no_errors ATP6V0A4 50617 genome.wustl.edu 36 7 138091762 138091762 + Missense_Mutation SNP T T A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 7 138091762 138091762 T A SNP ATP6V0A4 NM_020632 human genbank 54_36p -1 reviewed missense c.703 p.I235F 1.000 HMMPfam_V_ATPase_I HMMPfam_V_ATPase_I - no_errors PCDHA2 56146 genome.wustl.edu 36 5 140155602 140155602 + Missense_Mutation SNP A C C novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 5 140155602 140155602 A C SNP PCDHA2 NM_018905 human genbank 54_36p +1 reviewed missense c.869 p.Q290P 0.000 superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112 superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin - no_errors SPANXN1 494118 genome.wustl.edu 36 X 144145003 144145003 + Missense_Mutation SNP C C A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d X 144145003 144145003 C A SNP SPANXN1 NM_001009614 human genbank 54_36p +1 validated missense c.196 p.Q66K 0.039 NULL HMMPfam_SPAN-X - no_errors CNTNAP2 26047 genome.wustl.edu 36 7 146436259 146436259 + Missense_Mutation SNP C C T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 7 146436259 146436259 C T SNP CNTNAP2 NM_014141 human genbank 54_36p +1 reviewed missense c.638 p.A213V 0.847 superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282 HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like,PatternScan_GLYCO_HORMONE_BETA_1,HMMSmart_SM00294 - no_errors PDIA4 9601 genome.wustl.edu 36 7 148333347 148333347 + Silent SNP C C T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 7 148333347 148333347 C T SNP PDIA4 NM_004911 human genbank 54_36p -1 validated silent c.1341 p.E447 1.000 NULL superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1 - no_errors ZNF282 8427 genome.wustl.edu 36 7 148526737 148526737 + Missense_Mutation SNP T T G novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 7 148526737 148526737 T G SNP ZNF282 NM_003575 human genbank 54_36p +1 validated missense c.545 p.V182G 1.000 NULL superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1 - no_errors WWTR1 25937 genome.wustl.edu 36 3 150773393 150773393 + Silent SNP G A A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 3 150773393 150773393 G A SNP WWTR1 NM_015472 human genbank 54_36p -1 provisional silent c.516 p.V172 0.909 NULL superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1 - no_errors LCE2C 353140 genome.wustl.edu 36 1 150915289 150915289 + Silent SNP C C A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 1 150915289 150915289 C A SNP LCE2C NM_178429 human genbank 54_36p +1 validated silent c.174 p.P58 0.899 NULL NULL - no_errors C3orf44 131831 genome.wustl.edu 36 3 151882721 151882721 + Missense_Mutation SNP C C G novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 3 151882721 151882721 C G SNP C3orf44 NM_152394 human genbank 54_36p -1 validated missense c.856 p.D286H 0.170 NULL NULL - no_errors SYNE1 23345 genome.wustl.edu 36 6 152599075 152599075 + Missense_Mutation SNP A A T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 6 152599075 152599075 A T SNP SYNE1 NM_182961 human genbank 54_36p -1 reviewed missense c.20256 p.D6752E 1.000 superfamily_Spectrin repeat,HMMSmart_SM00150 superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH - no_errors ENSG00000164711 0 genome.wustl.edu 36 6 160823694 160823694 + Missense_Mutation SNP T T A novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 6 160823694 160823694 T A SNP ENSG00000164711 ENST00000297289 human ensembl 54_36p -1 known missense c.284 p.K95M 0.355 superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle - no_errors SLC19A2 10560 genome.wustl.edu 36 1 167721559 167721559 + Missense_Mutation SNP G G C novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 1 167721559 167721559 G C SNP SLC19A2 NM_006996 human genbank 54_36p -1 reviewed missense c.70 p.R24G 0.935 NULL superfamily_MFS general substrate transporter,HMMPfam_Folate_carrier,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors ATF2 1386 genome.wustl.edu 36 2 175670519 175670519 + Missense_Mutation SNP C C G novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 2 175670519 175670519 C G SNP ATF2 NM_001880 human genbank 54_36p -1 reviewed missense c.877 p.D293H 1.000 NULL superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC - no_errors PRG4 10216 genome.wustl.edu 36 1 184532660 184532660 + Silent SNP G G T novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 1 184532660 184532660 G T SNP PRG4 NM_005807 human genbank 54_36p +1 reviewed silent c.30 p.L10 0.051 NULL HMMSmart_SM00201,HMMPfam_Somatomedin_B,superfamily_Somatomedin B domain,PatternScan_SMB_1,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120,PatternScan_HEMOPEXIN - no_errors MDM4 4194 genome.wustl.edu 36 1 202780336 202780336 + Missense_Mutation SNP G G C novel unknown TCGA-23-2647-01A-01D-1526-09 TCGA-23-2647-10A-01D-1526-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 91a0e33a-5276-4a41-90bf-4355cb635318 53a93b80-fb59-496c-bf1a-c039810b942d 1 202780336 202780336 G C SNP MDM4 NM_002393 human genbank 54_36p +1 validated missense c.723 p.L241F 1.000 NULL superfamily_SWIB/MDM2 domain,HMMPfam_SWIB,PatternScan_ZF_RANBP2_1,superfamily_RING/U-box - no_errors