Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID PLCH2 9651 broad.mit.edu 36 1 2410548 2410548 + Missense_Mutation SNP C C G novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 CRNN 49860 broad.mit.edu 36 1 150649344 150649344 + Missense_Mutation SNP G G T novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 NTRK1 4914 broad.mit.edu 36 1 155112836 155112836 + Silent SNP G G A novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 ANXA7 310 broad.mit.edu 36 10 74826311 74826311 + Missense_Mutation SNP G G C novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 LCOR 84458 broad.mit.edu 36 10 98698842 98698842 + Missense_Mutation SNP C C T novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 RRP12 23223 broad.mit.edu 36 10 99140562 99140562 + Missense_Mutation SNP A A T novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 CRTAC1 55118 broad.mit.edu 36 10 99657889 99657889 + Nonsense_Mutation SNP G G A novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 PPRC1 23082 broad.mit.edu 36 10 103887617 103887617 + Silent SNP G G A novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 OBFC1 79991 broad.mit.edu 36 10 105638857 105638857 + Missense_Mutation SNP G G C novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 C11orf41 25758 broad.mit.edu 36 11 33523082 33523082 + Silent SNP C C T novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 XRRA1 143570 broad.mit.edu 36 11 74233764 74233764 + Splice_Site SNP A A G novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 SLC37A2 219855 broad.mit.edu 36 11 124455789 124455789 + Silent SNP C C A novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 LRFN5 145581 broad.mit.edu 36 14 41426911 41426911 + Missense_Mutation SNP C C T novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 KCNH5 27133 broad.mit.edu 36 14 62244875 62244875 + Missense_Mutation SNP G G A novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 CES3 23491 broad.mit.edu 36 16 65558234 65558234 + Missense_Mutation SNP G G T novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G T T G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 TAT 6898 broad.mit.edu 36 16 70161677 70161677 + Missense_Mutation SNP A A C novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 A A C C A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 TP53 7157 broad.mit.edu 36 17 7518306 7518306 + Missense_Mutation SNP A A T novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 A A T T A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 ZPBP2 124626 broad.mit.edu 36 17 35282836 35282836 + Silent SNP G G A novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 SEPT9 10801 broad.mit.edu 36 17 72995966 72995966 + Silent SNP A A T novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 A A T T A A Unknown Valid Somatic Phase_I Capture Sequenom Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 MBD3 53615 broad.mit.edu 36 19 1529479 1529479 + Missense_Mutation SNP C C G novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 ZNF77 58492 broad.mit.edu 36 19 2884602 2884602 + Missense_Mutation SNP C C T novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 NDUFB7 4713 broad.mit.edu 36 19 14538058 14538058 + Missense_Mutation SNP C C T novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 USP29 57663 broad.mit.edu 36 19 62332686 62332686 + Missense_Mutation SNP C C A novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 FZD5 7855 broad.mit.edu 36 2 208340364 208340364 + Missense_Mutation SNP G G A novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 C2orf67 151050 broad.mit.edu 36 2 210648569 210648569 + Missense_Mutation SNP G G C novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 WNT6 7475 broad.mit.edu 36 2 219446779 219446779 + Missense_Mutation SNP C C T novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 COL6A3 1293 broad.mit.edu 36 2 237914270 237914270 + Missense_Mutation SNP G G C novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 CASS4 57091 broad.mit.edu 36 20 54466892 54466892 + Silent SNP G G A novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 HHLA2 11148 broad.mit.edu 36 3 109559411 109559411 + Missense_Mutation SNP T T A novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 FTMT 94033 broad.mit.edu 36 5 121215735 121215735 + Missense_Mutation SNP G G T novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 ARAP3 64411 broad.mit.edu 36 5 141032024 141032024 + Nonsense_Mutation SNP G G A novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 SYNGAP1 8831 broad.mit.edu 36 6 33519227 33519227 + Missense_Mutation SNP G G A novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 TFAP2D 83741 broad.mit.edu 36 6 50804949 50804949 + Missense_Mutation SNP C C A novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 SHPRH 257218 broad.mit.edu 36 6 146306061 146306061 + Missense_Mutation SNP C C T novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 TRRAP 8295 broad.mit.edu 36 7 98411725 98411725 + Silent SNP C C T novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 PTCHD1 139411 broad.mit.edu 36 X 23321698 23321698 + Silent SNP G G T novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 G G T T G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947 DDX12 440081 broad.mit.edu 36 12 9481918 9481919 + In_Frame_Ins INS - CTGAGTAAC - novel none TCGA-13-1484-01A-01W-0545-08 TCGA-13-1484-10A-01W-0545-08 - - CTGAGTAAC CTGAGTAAC - - Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 379ee54e-fe99-4051-87bc-ecb12a55616d 1a26bbf3-b968-4d45-9c86-3d9c8fd31947