Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID BRF1 2972 hgsc.bcm.edu 36 14 104755073 104755073 + Missense_Mutation SNP A A G novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc GLG1 2734 hgsc.bcm.edu 36 16 73057108 73057108 + Nonsense_Mutation SNP G G C novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc MMP3 4314 hgsc.bcm.edu 36 11 102215174 102215174 + Missense_Mutation SNP G G A novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc PACS2 23241 hgsc.bcm.edu 36 14 104928592 104928592 + Missense_Mutation SNP G G A novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc PRKCZ 5590 hgsc.bcm.edu 36 1 2072179 2072179 + Missense_Mutation SNP C C T novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc PTPN12 5782 hgsc.bcm.edu 36 7 77085743 77085743 + Missense_Mutation SNP A A T novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc RUNDC3A 10900 hgsc.bcm.edu 36 17 39747660 39747660 + Missense_Mutation SNP C C T novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc SRPR 6734 hgsc.bcm.edu 36 11 125642297 125642297 + Frame_Shift_Del DEL T T - novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc TXNDC2 84203 hgsc.bcm.edu 36 18 9877064 9877064 + Silent SNP G G A novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc ADAMTS14 140766 hgsc.bcm.edu 36 10 72159929 72159929 + Missense_Mutation SNP C C A novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 C C C A C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc AIFM3 150209 hgsc.bcm.edu 36 22 19660811 19660811 + Silent SNP G G T novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc ANXA6 309 hgsc.bcm.edu 36 5 150492274 150492274 + Missense_Mutation SNP C C T novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc CREB3L4 148327 hgsc.bcm.edu 36 1 152207768 152207768 + Missense_Mutation SNP A A G novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 A A A G A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc EXD1 161829 hgsc.bcm.edu 36 15 39263912 39263912 + Missense_Mutation SNP T T G novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 T T T G T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc FAM177B 400823 hgsc.bcm.edu 36 1 220989520 220989520 + Missense_Mutation SNP A A C novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 A A A C A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc HJURP 55355 hgsc.bcm.edu 36 2 234414835 234414835 + Missense_Mutation SNP C C T novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc IFT88 8100 hgsc.bcm.edu 36 13 20128512 20128512 + Missense_Mutation SNP C C G novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 C C G G C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc ILF3 3609 hgsc.bcm.edu 36 19 10650296 10650296 + Silent SNP A A G novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 A A A G A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc MAGED2 10916 hgsc.bcm.edu 36 X 54857825 54857825 + Silent SNP G G C novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 G G G C G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc OTUD6B 51633 hgsc.bcm.edu 36 8 92151782 92151782 + Silent SNP G G T novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc PCLO 27445 hgsc.bcm.edu 36 7 82228628 82228628 + Missense_Mutation SNP G G A novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc PPIG 9360 hgsc.bcm.edu 36 2 170201655 170201655 + Silent SNP A A G novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 A A A G A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc RASSF5 83593 hgsc.bcm.edu 36 1 204826798 204826798 + Missense_Mutation SNP C C A novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 C C C A C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc SCAP 22937 hgsc.bcm.edu 36 3 47459376 47459376 + Missense_Mutation SNP A A C novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 A A C C A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc ZDHHC8 29801 hgsc.bcm.edu 36 22 18506823 18506823 + Missense_Mutation SNP G G T novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc ZER1 10444 hgsc.bcm.edu 36 9 130555993 130555993 + Silent SNP C C T novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc JMJD1C 221037 hgsc.bcm.edu 36 10 64624077 64624077 + Missense_Mutation SNP C C T novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc ADCY2 108 hgsc.bcm.edu 36 5 7573994 7573994 + Silent SNP G G A novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc ARMS2 387715 hgsc.bcm.edu 36 10 124204248 124204248 + Nonsense_Mutation SNP C C A novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 C C A A C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc BPNT1 10380 hgsc.bcm.edu 36 1 218319790 218319790 + Missense_Mutation SNP A A C novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 A A A C A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc FAM71B 153745 hgsc.bcm.edu 36 5 156522680 156522680 + Nonsense_Mutation SNP C C A novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 C C C A C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc FBXO24 26261 hgsc.bcm.edu 36 7 100030098 100030098 + Missense_Mutation SNP C C G novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 C C C G C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc MYO5C 55930 hgsc.bcm.edu 36 15 50340571 50340571 + Missense_Mutation SNP C C G novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 C C C G C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc NCAPD2 9918 hgsc.bcm.edu 36 12 6505552 6505552 + Missense_Mutation SNP T T G novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 T T T G T T Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc NUP205 23165 hgsc.bcm.edu 36 7 134909107 134909107 + Missense_Mutation SNP C C A novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 C C C A C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc PLSCR1 5359 hgsc.bcm.edu 36 3 147729140 147729140 + Missense_Mutation SNP G G A novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc RAG2 5897 hgsc.bcm.edu 36 11 36571142 36571142 + Missense_Mutation SNP A A G novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 A A A G A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc SOCS4 122809 hgsc.bcm.edu 36 14 54580048 54580048 + Missense_Mutation SNP G G C novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 G G G C G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc SPTB 6710 hgsc.bcm.edu 36 14 64322388 64322388 + Missense_Mutation SNP G G C novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 G G G C G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc TP53 7157 hgsc.bcm.edu 36 17 7517819 7517819 + Missense_Mutation SNP G G A rs28934574 TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 G G A A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc UGDH 7358 hgsc.bcm.edu 36 4 39188367 39188367 + Splice_Site SNP C C A novel TCGA-10-0937-01A-02W-0419-10 TCGA-10-0937-11A-01W-0419-10 C C C A C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 8ae832c4-5d46-48a2-b63d-f41855301f34 376a8252-4965-46f5-9a33-540b7af7fdcc