Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error MYBPHL 343263 genome.wustl.edu 36 1 109641076 109641076 + Silent SNP C C T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 1 109641076 109641076 C T SNP MYBPHL NM_001010985 human genbank 54_36p -1 validated silent c.582 p.T194 0.14 NULL - - no_errors FAM40A 85369 genome.wustl.edu 36 1 110390856 110390856 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 1 110390856 110390856 C T SNP FAM40A NM_033088 human genbank 54_36p 1 validated missense c.1448 p.A483V 0.95 NULL - - no_errors PTCHD2 57540 genome.wustl.edu 36 1 11518272 11518272 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 1 11518272 11518272 C T SNP PTCHD2 NM_020780 human genbank 54_36p 1 validated missense c.3800 p.P1267L 1 NULL - - no_errors PSMB4 5692 genome.wustl.edu 36 1 149639206 149639206 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 1 149639206 149639206 G T SNP PSMB4 NM_002796 human genbank 54_36p 1 reviewed missense c.266 p.R89L 0.96 NULL - - no_errors FLG 2312 genome.wustl.edu 36 1 150542311 150542311 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 1 150542311 150542311 C T SNP FLG NM_002016 human genbank 54_36p -1 provisional missense c.11675 p.R3892Q NULL - - no_errors KLHDC7A 127707 genome.wustl.edu 36 1 18680771 18680771 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 1 18680771 18680771 G A SNP KLHDC7A NM_152375 human genbank 54_36p 1 validated missense c.709 p.G237R 0.01 NULL - - no_errors CENPF 1063 genome.wustl.edu 36 1 212882145 212882145 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 1 212882145 212882145 A G SNP CENPF NM_016343 human genbank 54_36p 1 reviewed missense c.3841 p.T1281A 0.01 NULL Spectrin repeat;superfamily_Spectrin repeat;BAG domain;superfamily_BAG domain - no_errors PGBD2 267002 genome.wustl.edu 36 1 247178593 247178593 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 1 247178593 247178593 G C SNP PGBD2 NM_170725 human genbank 54_36p 1 validated missense c.1187 p.G396A 1 NULL - - no_errors LOC729794 729794 genome.wustl.edu 36 10 124479050 124479050 + Silent SNP G G A novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 10 124479050 124479050 G A SNP LOC729794 XM_001718748 human genbank 54_36p 1 model silent c.279 p.V93 0.02 NULL - - no_errors CPXM2 119587 genome.wustl.edu 36 10 125496310 125496310 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 10 125496310 125496310 C T SNP CPXM2 NM_198148 human genbank 54_36p -1 validated missense c.2231 p.R744Q 0.947 NULL - - no_errors LOC645954 645954 genome.wustl.edu 36 10 31014301 31014301 + RNA SNP C C T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 10 31014301 31014301 C T SNP LOC645954 XR_017086 human genbank 54_36p 1 model rna NULL NULL 1 - - - no_errors RCE1 9986 genome.wustl.edu 36 11 66367857 66367858 + Frame_Shift_Del DEL CA CA - Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 CA CA CA - CA CA Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 11 66367857 66367858 CA - DEL RCE1 NM_005133 human genbank 54_36p 1 reviewed frame_shift_del c.237_238 p.S82fs 1.000:1.000 NULL - (deletion:cds_exon[66367806,66367908]) no_errors DTX1 1840 genome.wustl.edu 36 12 112019056 112019056 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 12 112019056 112019056 G A SNP DTX1 NM_004416 human genbank 54_36p 1 reviewed missense c.1792 p.A598T 1 NULL HMMPfam_zf-C3HC4;HMMPfam_WWE;superfamily_RING/U-box - no_errors OVCH1 341350 genome.wustl.edu 36 12 29483541 29483541 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 12 29483541 29483541 C A SNP OVCH1 NM_183378 human genbank 54_36p -1 validated missense c.3251 p.W1084L 0 NULL HMMPfam_CUB;superfamily_Spermadhesin CUB domain;HMMPfam_Trypsin;superfamily_Trypsin-like serine proteases - no_errors ZFC3H1 196441 genome.wustl.edu 36 12 70322513 70322513 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 12 70322513 70322513 T C SNP ZFC3H1 NM_144982 human genbank 54_36p -1 validated missense c.1597 p.M533V 1 NULL superfamily_Protein prenylyltransferase - no_errors RB1 5925 genome.wustl.edu 36 13 47937375 47937375 + Nonsense_Mutation SNP C T T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 13 47937375 47937375 C T SNP RB1 NM_000321 human genbank 54_36p 1 reviewed nonsense c.2359 p.R787* 1 HMMPfam_Rb_C RB_B;HMMPfam_RB_B;RB_A;HMMPfam_RB_A;Rb_C;HMMPfam_Rb_C - no_errors SGK269 79834 genome.wustl.edu 36 15 75212886 75212886 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 15 75212886 75212886 C T SNP SGK269 NM_024776 human genbank 54_36p -1 validated missense c.3593 p.S1198N 1 NULL - - no_errors ABCC12 94160 genome.wustl.edu 36 16 46698736 46698736 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 16 46698736 46698736 G A SNP ABCC12 NM_033226 human genbank 54_36p -1 reviewed missense c.2473 p.R825W 0.97 HMMPfam_ABC_membrane HMMPfam_ABC_membrane;HMMPfam_ABC_tran;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain - no_errors CAMTA2 23125 genome.wustl.edu 36 17 4824431 4824431 + Missense_Mutation SNP G T T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 17 4824431 4824431 G T SNP CAMTA2 NM_015099 human genbank 54_36p -1 reviewed missense c.910 p.P304T 0.99 NULL HMMPfam_IQ;HMMPfam_Ank;superfamily_Ankyrin repeat;HMMPfam_TIG;HMMPfam_CG-1;superfamily_E set domains;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors TTYH2 94015 genome.wustl.edu 36 17 69760048 69760048 + Silent SNP C T T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 17 69760048 69760048 C T SNP TTYH2 NM_032646 human genbank 54_36p 1 reviewed silent c.1197 p.A399 0.32 HMMPfam_Tweety HMMPfam_Tweety - no_errors DYRK1B 9149 genome.wustl.edu 36 19 45013171 45013171 + Silent SNP G G A novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 19 45013171 45013171 G A SNP DYRK1B NM_004714 human genbank 54_36p -1 reviewed silent c.156 p.L52 1 NULL HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like) - no_errors SAE1 10055 genome.wustl.edu 36 19 52364991 52364991 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 19 52364991 52364991 G A SNP SAE1 NM_005500 human genbank 54_36p 1 validated missense c.704 p.R235H 0.99 NULL - - no_errors NLRP8 126205 genome.wustl.edu 36 19 61157935 61157935 + Silent SNP C C T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 19 61157935 61157935 C T SNP NLRP8 NM_176811 human genbank 54_36p 1 provisional silent c.699 p.Y233 0.01 NULL - - no_errors MUC16 94025 genome.wustl.edu 36 19 8934638 8934638 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 19 8934638 8934638 C T SNP MUC16 NM_024690 human genbank 54_36p -1 validated missense c.13808 p.R4603Q NULL HMMPfam_SEA;superfamily_Immunoglobulin;superfamily_SEA domain - no_errors COL6A3 1293 genome.wustl.edu 36 2 237950203 237950203 + Silent SNP T T C novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 2 237950203 237950203 T C SNP COL6A3 NM_004369 human genbank 54_36p -1 reviewed silent c.3021 p.P1007 0.12 HMMPfam_VWA VWA;HMMPfam_VWA;Kunitz_BPTI;HMMPfam_Kunitz_BPTI;Collagen;HMMPfam_Collagen - no_errors ZNF512 84450 genome.wustl.edu 36 2 27674544 27674544 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 2 27674544 27674544 G T SNP ZNF512 NM_032434 human genbank 54_36p 1 validated missense c.196 p.D66Y 0.72 NULL - - no_errors VPS16 64601 genome.wustl.edu 36 20 2795206 2795206 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 20 2795206 2795206 G A SNP VPS16 NM_022575 human genbank 54_36p 1 reviewed missense c.2506 p.A836T 1 NULL HMMPfam_Vps16_C;HMMPfam_Vps16_N - no_errors C20orf160 140706 genome.wustl.edu 36 20 30074124 30074124 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 20 30074124 30074124 G T SNP C20orf160 NM_080625 human genbank 54_36p 1 validated missense c.934 p.D312Y 1 NULL - - no_errors ATP9A 10079 genome.wustl.edu 36 20 49726099 49726099 + Missense_Mutation SNP A A T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 20 49726099 49726099 A T SNP ATP9A NM_006045 human genbank 54_36p -1 validated missense c.855 p.N285K 1 NULL - - no_errors RHOA 387 genome.wustl.edu 36 3 49380916 49380916 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 3 49380916 49380916 C T SNP RHOA NM_001664 human genbank 54_36p -1 validated missense c.226 p.D76N 1 HMMPfam_Ras HMMPfam_Ras;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors PTPRG 5793 genome.wustl.edu 36 3 61709623 61709623 + Silent SNP C C T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 3 61709623 61709623 C T SNP PTPRG NM_002841 human genbank 54_36p 1 reviewed silent c.117 p.H39 0.91 NULL Y_phosphatase;HMMPfam_Y_phosphatase;Carb_anhydrase;HMMPfam_Carb_anhydrase;fn3;HMMPfam_fn3 - no_errors LOC400750 400750 genome.wustl.edu 36 1 38948805 38948805 + RNA SNP G G T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 1 38948805 38948805 G T SNP LOC400750 XR_039444 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene UGT8 7368 genome.wustl.edu 36 4 115763968 115763968 + Silent SNP C C T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 4 115763968 115763968 C T SNP UGT8 NM_003360 human genbank 54_36p 1 validated silent c.483 p.G161 1 HMMPfam_UDPGT HMMPfam_UDPGT;superfamily_UDP-Glycosyltransferase/glycogen phosphorylase - no_errors HHIP 64399 genome.wustl.edu 36 4 145852675 145852675 + Splice_Site SNP T T C novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 4 145852675 145852675 T C SNP HHIP NM_022475 human genbank 54_36p 1 reviewed splice_site c.1423+2 e8+2 1 - - - no_errors AKD1 221264 genome.wustl.edu 36 6 110102103 110102103 + Missense_Mutation SNP G G T Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 G G G T G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 6 110102103 110102103 G T SNP AKD2 NM_145025 human genbank 54_36p -1 validated missense c.172 p.R58S 0.989 NULL - - no_errors CENPQ 55166 genome.wustl.edu 36 6 49547843 49547843 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 6 49547843 49547843 A G SNP CENPQ NM_018132 human genbank 54_36p 1 validated missense c.266 p.E89G 0.98 NULL - - no_errors ZFAND2A 90637 genome.wustl.edu 36 7 1159339 1159339 + Frame_Shift_Del DEL C C - Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C - C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 7 1159339 1159339 C - DEL ZFAND2A NM_182491 human genbank 54_36p -1 provisional frame_shift_del c.330 p.M110fs 1 HMMPfam_zf-AN1 HMMPfam_zf-AN1 (deletion:cds_exon[1159231,1159386]) no_errors CLK2P 1197 genome.wustl.edu 36 7 23591232 23591232 + RNA SNP C C T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 7 23591232 23591232 C T SNP CLK2P NR_002711 human genbank 54_36p -1 validated rna NULL NULL 1 - - - pseudogene ENSG00000204562 0 genome.wustl.edu 36 9 83722308 83722308 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 9 83722308 83722308 C G SNP ENSG00000204562 ENST00000376459 human ensembl 54_36p 1 known missense c.181 p.Q61E NULL - - no_errors DNM1 1759 genome.wustl.edu 36 9 130052309 130052309 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 9 130052309 130052309 G A SNP DNM1 NM_004408 human genbank 54_36p 1 reviewed missense c.2171 p.R724Q 1 HMMPfam_GED HMMPfam_Dynamin_M;HMMPfam_Dynamin_N;HMMPfam_PH;HMMPfam_GED;superfamily_PH domain-like;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors BNC2 54796 genome.wustl.edu 36 9 16427049 16427049 + Silent SNP T T C novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 9 16427049 16427049 T C SNP BNC2 NM_017637 human genbank 54_36p -1 validated silent c.1143 p.T381 0.92 NULL HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors MLLT3 4300 genome.wustl.edu 36 9 20404188 20404188 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 9 20404188 20404188 T C SNP MLLT3 NM_004529 human genbank 54_36p -1 validated missense c.656 p.K219R 1 NULL HMMPfam_YEATS - no_errors MXRA5 25878 genome.wustl.edu 36 X 3251454 3251454 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 X 3251454 3251454 C T SNP MXRA5 NM_015419 human genbank 54_36p -1 validated missense c.2272 p.V758I 0.01 NULL HMMPfam_LRR_1;HMMPfam_I-set;HMMPfam_ig;superfamily_Immunoglobulin;superfamily_L domain-like - no_errors FAM47C 442444 genome.wustl.edu 36 X 36938205 36938205 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 X 36938205 36938205 A G SNP FAM47C NM_001013736 human genbank 54_36p 1 provisional missense c.1801 p.T601A 0 NULL - - no_errors MAOB 4129 genome.wustl.edu 36 X 43537718 43537718 + Missense_Mutation SNP A A T novel Unknown TCGA-10-0933-01A-01W-0421-09 TCGA-10-0933-11A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 3ec4215f-b57d-4ae7-b247-55ea1f7e97d3 44c571b4-9884-4d27-b5cb-cbd97a9de5f4 X 43537718 43537718 A T SNP MAOB NM_000898 human genbank 54_36p -1 reviewed missense c.820 p.F274I 1 HMMPfam_Amino_oxidase HMMPfam_Amino_oxidase;superfamily_FAD/NAD(P)-binding domain;superfamily_FAD-linked reductases C-terminal domain - no_errors