Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID GNAT1 2779 hgsc.bcm.edu 36 3 50207281 50207281 + Missense_Mutation SNP G G C novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G G C G G Unknown Valid Somatic Phase_IV WXS SOLID SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be DST 667 hgsc.bcm.edu 36 6 56533084 56533084 + Frame_Shift_Del DEL C C - novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be FBLN1 2192 hgsc.bcm.edu 36 22 44316768 44316782 + In_Frame_Del DEL GTTTCCGCTGCGAAT GTTTCCGCTGCGAAT - novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 GTTTCCGCTGCGAAT GTTTCCGCTGCGAAT . . . . Unknown Untested Somatic Phase_IV WXS none SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be PRB1 5542 hgsc.bcm.edu 36 12 11397670 11397670 + Missense_Mutation SNP A A G novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be ANO6 196527 hgsc.bcm.edu 36 12 44096836 44096836 + Missense_Mutation SNP G G C novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G G C G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be APLP2 334 hgsc.bcm.edu 36 11 129498784 129498784 + Silent SNP C C G novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C C G C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be ARRDC3 57561 hgsc.bcm.edu 36 5 90707095 90707095 + Missense_Mutation SNP C C G novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C C G C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be ARSG 22901 hgsc.bcm.edu 36 17 63892821 63892821 + Missense_Mutation SNP C C G novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C C G C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be CCDC67 159989 hgsc.bcm.edu 36 11 92744058 92744058 + Silent SNP C C T novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be CD200R1 131450 hgsc.bcm.edu 36 3 114130471 114130471 + Silent SNP G G A novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be CYTH1 9267 hgsc.bcm.edu 36 17 74183809 74183809 + Missense_Mutation SNP C C T novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be DNAH7 56171 hgsc.bcm.edu 36 2 196445387 196445387 + Silent SNP G G T novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be EZR 7430 hgsc.bcm.edu 36 6 159126601 159126601 + Silent SNP C C A novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C A A C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be FAM24A 118670 hgsc.bcm.edu 36 10 124662460 124662460 + Missense_Mutation SNP A A T novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 A A A T A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be HDAC4 9759 hgsc.bcm.edu 36 2 239689521 239689521 + Silent SNP G G A novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be HPS3 84343 hgsc.bcm.edu 36 3 150368429 150368429 + Silent SNP G G A novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be KIAA1305 57523 hgsc.bcm.edu 36 14 23949056 23949056 + Missense_Mutation SNP T T G novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 T T T G T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be MUC19 283463 hgsc.bcm.edu 36 12 39108069 39108069 + Missense_Mutation SNP G G A novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be NOD1 10392 hgsc.bcm.edu 36 7 30454487 30454487 + Missense_Mutation SNP T T G novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 T T T G T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be NPAS3 64067 hgsc.bcm.edu 36 14 32754188 32754188 + Missense_Mutation SNP C C T novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be SCN5A 6331 hgsc.bcm.edu 36 3 38626341 38626341 + Silent SNP G G T novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be ZFYVE28 57732 hgsc.bcm.edu 36 4 2244812 2244812 + Missense_Mutation SNP C C A novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C C A C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be ZMAT5 55954 hgsc.bcm.edu 36 22 28464344 28464344 + Missense_Mutation SNP G G A novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G A A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be CCDC80 151887 hgsc.bcm.edu 36 3 113839678 113839678 + Missense_Mutation SNP C C T novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be TP53 7157 hgsc.bcm.edu 36 17 7520099 7520099 + Missense_Mutation SNP C T T novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C T T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be ADAMTS4 9507 hgsc.bcm.edu 36 1 159430448 159430448 + Missense_Mutation SNP C C G novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C C G C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be CCNT1 904 hgsc.bcm.edu 36 12 47379887 47379887 + Missense_Mutation SNP A A C novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 A A A C A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be CPAMD8 27151 hgsc.bcm.edu 36 19 16993877 16993877 + Missense_Mutation SNP C C G novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C C G C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be DCLK1 9201 hgsc.bcm.edu 36 13 35584117 35584117 + Silent SNP C C T novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be DDX59 83479 hgsc.bcm.edu 36 1 198884312 198884312 + Missense_Mutation SNP G G C novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G G C G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be DENND4A 10260 hgsc.bcm.edu 36 15 63797187 63797187 + Missense_Mutation SNP G G C novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G G C G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be HOOK1 51361 hgsc.bcm.edu 36 1 60096727 60096727 + Missense_Mutation SNP G G A novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be HSPA1L 3305 hgsc.bcm.edu 36 6 31886183 31886183 + Missense_Mutation SNP C C G novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C C G C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be HYDIN 54768 hgsc.bcm.edu 36 16 69556200 69556200 + Missense_Mutation SNP T T A novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 T T T A T T Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be IL1RAPL1 11141 hgsc.bcm.edu 36 X 29845546 29845546 + Nonsense_Mutation SNP G G T novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G G T G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be PABPC3 5042 hgsc.bcm.edu 36 13 24569668 24569668 + Missense_Mutation SNP G G C novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G G C G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be PDCD11 22984 hgsc.bcm.edu 36 10 105190044 105190044 + Missense_Mutation SNP C C T novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be PITPNM3 83394 hgsc.bcm.edu 36 17 6322056 6322056 + Missense_Mutation SNP G G A novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be PPAP2A 8611 hgsc.bcm.edu 36 5 54757623 54757623 + Missense_Mutation SNP A A C novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 A A A C A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be RAPGEF6 51735 hgsc.bcm.edu 36 5 130794642 130794642 + Missense_Mutation SNP T T G novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 T T T G T T Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be RARS2 57038 hgsc.bcm.edu 36 6 88291076 88291076 + Missense_Mutation SNP C C T novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be RELN 5649 hgsc.bcm.edu 36 7 102900523 102900523 + Missense_Mutation SNP C C T novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be SCN5A 6331 hgsc.bcm.edu 36 3 38626347 38626347 + Missense_Mutation SNP G G T novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G G T G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be FZD3 7976 hgsc.bcm.edu 36 8 28441484 28441484 + Missense_Mutation SNP G G C novel TCGA-10-0928-01A-02W-0419-10 TCGA-10-0928-11A-01W-0419-10 G G C C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID d69325c8-7b93-4156-a4a0-6f9f4579aaaf a28ea394-a137-4139-98be-f559a0fe37be