Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID RLF 6018 broad.mit.edu 36 1 40399896 40399896 + Splice_Site SNP G G T novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 RGR 5995 broad.mit.edu 36 10 85998718 85998718 + Silent SNP G G A novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 OR5L2 26338 broad.mit.edu 36 11 55351473 55351473 + Missense_Mutation SNP T T C novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 LRRK2 120892 broad.mit.edu 36 12 38994218 38994218 + Missense_Mutation SNP G G A novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 KRT85 3891 broad.mit.edu 36 12 51047140 51047140 + Missense_Mutation SNP G G A novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 UTP20 27340 broad.mit.edu 36 12 100281580 100281580 + Nonsense_Mutation SNP C C G novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 FOXG1 2290 broad.mit.edu 36 14 28306971 28306971 + Silent SNP C C T novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 MAP1A 4130 broad.mit.edu 36 15 41605892 41605892 + Silent SNP G G A novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 BFAR 51283 broad.mit.edu 36 16 14651187 14651187 + Missense_Mutation SNP G G A novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 NUDT7 283927 broad.mit.edu 36 16 76316983 76316983 + Splice_Site SNP G G T novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 TP53 7157 broad.mit.edu 36 17 7519168 7519168 + Missense_Mutation SNP A A G novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 A A G G A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 NF1 4763 broad.mit.edu 36 17 26573001 26573001 + Missense_Mutation SNP T T C novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 T T C C T T Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 RBBP8 5932 broad.mit.edu 36 18 18856129 18856129 + Silent SNP T T C novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 ZNF181 339318 broad.mit.edu 36 19 39923763 39923763 + Missense_Mutation SNP A A G novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 KCNS3 3790 broad.mit.edu 36 2 17976889 17976889 + Missense_Mutation SNP C C T novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 GTF3C2 2976 broad.mit.edu 36 2 27405843 27405843 + Missense_Mutation SNP C C T novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 KCNK12 56660 broad.mit.edu 36 2 47602342 47602342 + Silent SNP G G A novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 WIPF1 7456 broad.mit.edu 36 2 175145134 175145134 + Silent SNP G G A novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 FZD5 7855 broad.mit.edu 36 2 208340499 208340499 + Missense_Mutation SNP C C A novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 FAM19A1 407738 broad.mit.edu 36 3 68549253 68549253 + Silent SNP C C T novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 SCHIP1 29970 broad.mit.edu 36 3 161086767 161086767 + Missense_Mutation SNP G G A novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 SI 6476 broad.mit.edu 36 3 166267839 166267839 + Missense_Mutation SNP T T A novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 T T A A T T Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 PCDHAC2 56134 broad.mit.edu 36 5 140327822 140327822 + Silent SNP A A G novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 CLINT1 9685 broad.mit.edu 36 5 157169305 157169305 + Missense_Mutation SNP C C T novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 HSPA1A 3303 broad.mit.edu 36 6 31893249 31893249 + Silent SNP G G A novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 MYOM2 9172 broad.mit.edu 36 8 2034099 2034099 + Silent SNP C C T novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 DOCK5 80005 broad.mit.edu 36 8 25255872 25255872 + Missense_Mutation SNP A A G novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 PRKDC 5591 broad.mit.edu 36 8 48968400 48968400 + Silent SNP C C T novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 SDC2 6383 broad.mit.edu 36 8 97674951 97674951 + Missense_Mutation SNP T T G novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 T T G G T T Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 SCRIB 23513 broad.mit.edu 36 8 144963074 144963074 + Missense_Mutation SNP A A T novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 PTPRD 5789 broad.mit.edu 36 9 8321723 8321723 + Missense_Mutation SNP C C T novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 TRPM3 80036 broad.mit.edu 36 9 72667692 72667692 + Silent SNP A A C novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 OR13C5 138799 broad.mit.edu 36 9 106400815 106400815 + Missense_Mutation SNP C C A novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 ODF2 4957 broad.mit.edu 36 9 130273486 130273486 + Missense_Mutation SNP C C G novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 ITGB1BP2 26548 broad.mit.edu 36 X 70439016 70439016 + Missense_Mutation SNP A A G novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8 AFF2 2334 broad.mit.edu 36 X 147726897 147726897 + Missense_Mutation SNP C C T novel none TCGA-09-2053-01C-01W-0722-08 TCGA-09-2053-10A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 9d97fd73-5ca9-4689-8b3b-f42bde1bfb85 24c8e468-a13f-40df-9c36-9b3199776bb8