Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID NPPA 4878 broad.mit.edu 36 1 11828658 11828658 + Missense_Mutation SNP A A G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd PADI3 51702 broad.mit.edu 36 1 17466930 17466930 + Missense_Mutation SNP A A G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd HIST2H2AC 8338 broad.mit.edu 36 1 148125221 148125221 + Nonsense_Mutation SNP C C T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd PGLYRP4 57115 broad.mit.edu 36 1 151579548 151579548 + Missense_Mutation SNP G G A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd RASAL2 9462 broad.mit.edu 36 1 176535831 176535831 + Nonsense_Mutation SNP G G T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd KCNT2 343450 broad.mit.edu 36 1 194516679 194516679 + Missense_Mutation SNP A A C novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd CR2 1380 broad.mit.edu 36 1 205706730 205706730 + Nonsense_Mutation SNP G G T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd RYR2 6262 broad.mit.edu 36 1 235726661 235726661 + Missense_Mutation SNP T T C novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd VN1R5 317705 broad.mit.edu 36 1 245486642 245486642 + Missense_Mutation SNP G G C novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd LIPK 643414 broad.mit.edu 36 10 90502302 90502302 + Missense_Mutation SNP A A G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd CYP2C19 1557 broad.mit.edu 36 10 96592719 96592719 + Missense_Mutation SNP T T A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd RAPSN 5913 broad.mit.edu 36 11 47419742 47419742 + Missense_Mutation SNP G G C novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd OR8H1 219469 broad.mit.edu 36 11 55814446 55814446 + Silent SNP G G T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd SSRP1 6749 broad.mit.edu 36 11 56852464 56852464 + Silent SNP G G A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd TCN1 6947 broad.mit.edu 36 11 59386668 59386668 + Missense_Mutation SNP C C A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd PACS1 55690 broad.mit.edu 36 11 65735253 65735253 + Missense_Mutation SNP C C T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd C11orf82 220042 broad.mit.edu 36 11 82317532 82317532 + Missense_Mutation SNP C C T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd FAT3 120114 broad.mit.edu 36 11 91727535 91727535 + Missense_Mutation SNP T T G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 T T G G T T Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd ACAT1 38 broad.mit.edu 36 11 107517594 107517594 + Silent SNP T T C novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd FGF14 2259 broad.mit.edu 36 13 101177047 101177047 + Silent SNP A A G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd AKAP6 9472 broad.mit.edu 36 14 32084933 32084933 + Silent SNP G G A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd C14orf118 55668 broad.mit.edu 36 14 75714093 75714093 + Missense_Mutation SNP A A T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd BDKRB1 623 broad.mit.edu 36 14 95800367 95800367 + Missense_Mutation SNP C C A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd RYR3 6263 broad.mit.edu 36 15 31680950 31680950 + Silent SNP G G T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd C16orf75 116028 broad.mit.edu 36 16 11352077 11352077 + Missense_Mutation SNP C C T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd ERCC4 2072 broad.mit.edu 36 16 13949294 13949294 + Silent SNP C C T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd EIF4A1 1973 broad.mit.edu 36 17 7421681 7421681 + Missense_Mutation SNP A A G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd LGALS9C 654346 broad.mit.edu 36 17 18327955 18327955 + Missense_Mutation SNP C C A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd IFI35 3430 broad.mit.edu 36 17 38419154 38419154 + Missense_Mutation SNP G G T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd RGS9 8787 broad.mit.edu 36 17 60651880 60651880 + Missense_Mutation SNP G G A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd BPTF 2186 broad.mit.edu 36 17 63331364 63331364 + Missense_Mutation SNP G G C novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd CYP2A6 1548 broad.mit.edu 36 19 46044794 46044794 + Silent SNP G G T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd ZNF765 91661 broad.mit.edu 36 19 58604142 58604142 + Missense_Mutation SNP A A T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd LILRA1 11024 broad.mit.edu 36 19 59798208 59798208 + Missense_Mutation SNP C C T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd KIF3C 3797 broad.mit.edu 36 2 26056956 26056956 + Silent SNP G G T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd IL18RAP 8807 broad.mit.edu 36 2 102420236 102420236 + Missense_Mutation SNP G G T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd BIN1 274 broad.mit.edu 36 2 127544637 127544637 + Missense_Mutation SNP C C T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd MYO1B 4430 broad.mit.edu 36 2 191969465 191969465 + Missense_Mutation SNP G G C novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd UGT1A10 54575 broad.mit.edu 36 2 234210562 234210562 + Missense_Mutation SNP T T C novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd VPS16 64601 broad.mit.edu 36 20 2794086 2794086 + Missense_Mutation SNP A A G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd DSN1 79980 broad.mit.edu 36 20 34832691 34832691 + Silent SNP T T G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd DNTTIP1 116092 broad.mit.edu 36 20 43863484 43863484 + Nonsense_Mutation SNP G G T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd SULF2 55959 broad.mit.edu 36 20 45798887 45798887 + Missense_Mutation SNP C C A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd B4GALT5 9334 broad.mit.edu 36 20 47696935 47696935 + Missense_Mutation SNP G G T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd POTED 317754 broad.mit.edu 36 21 13909667 13909667 + Nonsense_Mutation SNP G G T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd C21orf66 94104 broad.mit.edu 36 21 33039006 33039006 + Missense_Mutation SNP A A C novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd HLCS 3141 broad.mit.edu 36 21 37231147 37231147 + Missense_Mutation SNP G G T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd SLC6A1 6529 broad.mit.edu 36 3 11034656 11034656 + Silent SNP C C T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd CTNNB1 1499 broad.mit.edu 36 3 41253081 41253081 + Splice_Site SNP A A G rs71811389 unknown TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd COL7A1 1294 broad.mit.edu 36 3 48584454 48584454 + Missense_Mutation SNP C C G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd EEFSEC 60678 broad.mit.edu 36 3 129542882 129542882 + Silent SNP G G T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd ABCF3 55324 broad.mit.edu 36 3 185393112 185393112 + Silent SNP C C G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd THAP9 79725 broad.mit.edu 36 4 84058716 84058716 + Missense_Mutation SNP A A T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd PTPN13 5783 broad.mit.edu 36 4 87950112 87950112 + Missense_Mutation SNP C C A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd MEPE 56955 broad.mit.edu 36 4 88986112 88986112 + Missense_Mutation SNP C C A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd FAT4 79633 broad.mit.edu 36 4 126461375 126461375 + Silent SNP T T A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd TKTL2 84076 broad.mit.edu 36 4 164612997 164612997 + Missense_Mutation SNP C C A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd SAP30 8819 broad.mit.edu 36 4 174529208 174529208 + Silent SNP C C A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd GLRA3 8001 broad.mit.edu 36 4 175816848 175816848 + Missense_Mutation SNP C C T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd KIAA0947 23379 broad.mit.edu 36 5 5513573 5513573 + Missense_Mutation SNP G G A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd MYO10 4651 broad.mit.edu 36 5 16725879 16725879 + Missense_Mutation SNP G G A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd IL31RA 133396 broad.mit.edu 36 5 55248398 55248398 + Missense_Mutation SNP A A G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd FCHO2 115548 broad.mit.edu 36 5 72400306 72400306 + Missense_Mutation SNP G G T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd SLCO6A1 133482 broad.mit.edu 36 5 101862268 101862268 + Missense_Mutation SNP C C A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd FCHSD1 89848 broad.mit.edu 36 5 141006472 141006472 + Missense_Mutation SNP A A G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd TEAD3 7005 broad.mit.edu 36 6 35562328 35562328 + Missense_Mutation SNP A A C novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd MOCS1 0 broad.mit.edu 36 6 39985574 39985574 + Missense_Mutation SNP T T C novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd CD109 135228 broad.mit.edu 36 6 74574677 74574677 + Silent SNP A A C novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd CGA 1081 broad.mit.edu 36 6 87852257 87852257 + Missense_Mutation SNP C C G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd MET 4233 broad.mit.edu 36 7 116127036 116127036 + Missense_Mutation SNP A A G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd NPBWR1 2831 broad.mit.edu 36 8 54015988 54015988 + Missense_Mutation SNP C C T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd ASPH 444 broad.mit.edu 36 8 62651905 62651905 + Missense_Mutation SNP C C G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd CYP7B1 9420 broad.mit.edu 36 8 65671997 65671997 + Missense_Mutation SNP G G A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd C9orf72 203228 broad.mit.edu 36 9 27538308 27538308 + Missense_Mutation SNP C C G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd UNC13B 10497 broad.mit.edu 36 9 35300543 35300543 + Missense_Mutation SNP C C T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd TBC1D2 55357 broad.mit.edu 36 9 100057643 100057643 + Missense_Mutation SNP A A G novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd SURF6 6838 broad.mit.edu 36 9 135189382 135189382 + Silent SNP C C T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd MAGED1 9500 broad.mit.edu 36 X 51656346 51656346 + Silent SNP G G A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd PHF8 23133 broad.mit.edu 36 X 54037048 54037048 + Missense_Mutation SNP T T C novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd CXorf39 139231 broad.mit.edu 36 X 103321041 103321041 + Missense_Mutation SNP T T C novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd KIAA1210 57481 broad.mit.edu 36 X 118112043 118112043 + Missense_Mutation SNP T T A novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd SPANXN4 441525 broad.mit.edu 36 X 141949669 141949669 + Nonsense_Mutation SNP G G T novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd RIMBP2 23504 broad.mit.edu 36 12 129463099 129463127 + Splice_Site DEL ATAGGGGTTTGCGCTTACCTATTTTCTCC - ATAGGGGTTTGCGCTTACCTATTTTCTCC novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 ATAGGGGTTTGCGCTTACCTATTTTCTCC ATAGGGGTTTGCGCTTACCTATTTTCTCC - - ATAGGGGTTTGCGCTTACCTATTTTCTCC ATAGGGGTTTGCGCTTACCTATTTTCTCC Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd NP 4860 broad.mit.edu 36 14 20010384 20010385 + Frame_Shift_Del DEL TC - TC novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 TC TC - - TC TC Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd YLPM1 56252 broad.mit.edu 36 14 74334998 74335001 + Frame_Shift_Del DEL GGTT - GGTT novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 GGTT GGTT - - GGTT GGTT Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd TDP1 55775 broad.mit.edu 36 14 89525057 89525063 + Frame_Shift_Del DEL GTCAGTT - GTCAGTT novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 GTCAGTT GTCAGTT - - GTCAGTT GTCAGTT Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd ATG2B 55102 broad.mit.edu 36 14 95858346 95858347 + Splice_Site INS - AA - novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 - - AA AA - - Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd IL21R 50615 broad.mit.edu 36 16 27356479 27356504 + Frame_Shift_Del DEL GAGTGTGGCAGCTTTCTCCTGGCTGA - GAGTGTGGCAGCTTTCTCCTGGCTGA novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 GAGTGTGGCAGCTTTCTCCTGGCTGA GAGTGTGGCAGCTTTCTCCTGGCTGA - - GAGTGTGGCAGCTTTCTCCTGGCTGA GAGTGTGGCAGCTTTCTCCTGGCTGA Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd TP53 7157 broad.mit.edu 36 17 7518991 7519015 + Splice_Site DEL TAAGATGCTGAGGAGGGGCCAGACC - TAAGATGCTGAGGAGGGGCCAGACC novel none TCGA-09-2044-01B-01W-0799-08 TCGA-09-2044-10A-01W-0799-08 TAAGATGCTGAGGAGGGGCCAGACC TAAGATGCTGAGGAGGGGCCAGACC - - TAAGATGCTGAGGAGGGGCCAGACC TAAGATGCTGAGGAGGGGCCAGACC Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 39544e41-a762-442a-93e9-5382dbc7adc2 fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd