Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error ENSG00000210082 0 genome.wustl.edu 36 MT 2675 2675 + RNA SNP G A A novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 MT 2675 2675 G A SNP ENSG00000210082 ENST00000387347 human ensembl 54_36p +1 known rna NULL NULL NULL - - - no_errors MT-ND2 0 genome.wustl.edu 36 MT 5169 5169 + Silent SNP C T T novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 MT 5169 5169 C T SNP MT-ND2 ENST00000361453 human ensembl 54_36p +1 known silent c.699 p.T233 NULL HMMPfam_Oxidored_q1 HMMPfam_Oxidored_q1,HMMPfam_NADH_dehy_S2_C - no_stop_codon:bad_bp_length_for_coding_region IPO7 10527 genome.wustl.edu 36 11 9423308 9423308 + Silent SNP G G A novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 11 9423308 9423308 G A SNP IPO7 NM_006391 human genbank 54_36p +1 reviewed silent c.3108 p.G1036 1.000 NULL superfamily_ARM-type_fold,HMMPfam_IBN_N - no_errors HTR6 3362 genome.wustl.edu 36 1 19877693 19877693 + Missense_Mutation SNP G G A novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 1 19877693 19877693 G A SNP HTR6 NM_000871 human genbank 54_36p +1 provisional missense c.761 p.R254H 0.999 superfamily_SSF81321,HMMPfam_7tm_1 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors KRAS 3845 genome.wustl.edu 36 12 25289551 25289551 + Missense_Mutation SNP C C A novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 12 25289551 25289551 C A SNP KRAS NM_033360 human genbank 54_36p -1 reviewed missense c.35 p.G12V 1.000 HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176 HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176 - no_errors SCN5A 6331 genome.wustl.edu 36 3 38576869 38576869 + Missense_Mutation SNP C C T novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 3 38576869 38576869 C T SNP SCN5A NM_001099404 human genbank 54_36p -1 reviewed missense c.4018 p.V1340I 1.000 superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ - no_errors MX1 4599 genome.wustl.edu 36 21 41746472 41746472 + Missense_Mutation SNP C C T novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 21 41746472 41746472 C T SNP MX1 NM_002462 human genbank 54_36p +1 reviewed missense c.1564 p.R522C 0.219 HMMPfam_Dynamin_M HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,HMMPfam_GED,HMMSmart_GED - no_errors LOC342892 342892 genome.wustl.edu 36 19 41931059 41931059 + Missense_Mutation SNP C C T novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 19 41931059 41931059 C T SNP LOC342892 XM_001720258 human genbank 54_36p -1 model missense c.2717 p.R906H 0.000 superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1 superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1 - pseudogene IL17RD 54756 genome.wustl.edu 36 3 57106922 57106922 + Missense_Mutation SNP C C A novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 3 57106922 57106922 C A SNP IL17RD NM_017563 human genbank 54_36p -1 validated missense c.1753 p.D585Y 0.019 NULL HMMPfam_SEFIR - no_errors GTPBP5 26164 genome.wustl.edu 36 20 60209423 60209423 + Silent SNP G G A novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 20 60209423 60209423 G A SNP GTPBP5 NM_015666 human genbank 54_36p +1 validated silent c.1116 p.A372 0.000 superfamily_SSF52540 superfamily_GTP1_OBG_sub,HMMPfam_GTP1_OBG,HMMPfam_MMR_HSR1,superfamily_SSF52540 - no_errors FOXO4 4303 genome.wustl.edu 36 X 70237915 70237915 + Silent SNP C C T novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 X 70237915 70237915 C T SNP FOXO4 NM_005938 human genbank 54_36p +1 validated silent c.1110 p.L370 0.998 NULL "HMMPfam_Fork_head,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00339,PatternScan_FORK_HEAD_2" - no_errors CLIP2 7461 genome.wustl.edu 36 7 73406254 73406254 + Missense_Mutation SNP G G C novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 7 73406254 73406254 G C SNP CLIP2 NM_003388 human genbank 54_36p +1 reviewed missense c.787 p.A263P 1.000 superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1 superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1 - no_errors EIF5AL1 143244 genome.wustl.edu 36 10 80942515 80942515 + Missense_Mutation SNP G G T novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 10 80942515 80942515 G T SNP EIF5AL1 NM_001099692 human genbank 54_36p +1 validated missense c.104 p.G35V 1.000 superfamily_Transl_SH3_like superfamily_Transl_SH3_like,PatternScan_IF5A_HYPUSINE,HMMPfam_eIF-5a,superfamily_Nucleic_acid_OB - no_errors uc001pda.1 0 genome.wustl.edu 36 11 89034999 89034999 + Missense_Mutation SNP T T C novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 11 89034999 89034999 T C SNP uc001pda.1 ENST00000389724 human ensembl 54_36p +1 known missense c.800 p.V267A 0.998 superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M28,superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer - no_start_codon COL1A2 1278 genome.wustl.edu 36 7 93894884 93894884 + Missense_Mutation SNP G G T novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 7 93894884 93894884 G T SNP COL1A2 NM_000089 human genbank 54_36p +1 reviewed missense c.3277 p.G1093C 1.000 HMMPfam_Collagen HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI - no_errors DYNC1H1 1778 genome.wustl.edu 36 14 101578200 101578200 + Missense_Mutation SNP C C G novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 14 101578200 101578200 C G SNP DYNC1H1 NM_001376 human genbank 54_36p +1 reviewed missense c.12200 p.T4067S 0.997 HMMPfam_Dynein_heavy HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy - no_errors PCDHGB5 56101 genome.wustl.edu 36 5 140758414 140758414 + Missense_Mutation SNP C C T novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 5 140758414 140758414 C T SNP PCDHGB5 NM_018925 human genbank 54_36p +1 reviewed missense c.536 p.S179L 0.815 superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112 HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin - no_errors WDR49 151790 genome.wustl.edu 36 3 168705841 168705841 + Silent SNP G G A novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 3 168705841 168705841 G A SNP WDR49 NM_178824 human genbank 54_36p -1 provisional silent c.1776 p.C592 0.000 NULL superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1 - no_errors SRGAP2 23380 genome.wustl.edu 36 1 204679984 204679984 + Missense_Mutation SNP C C T novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 1 204679984 204679984 C T SNP SRGAP2 NM_015326 human genbank 54_36p +1 validated missense c.1544 p.P515L 1.000 NULL NULL - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region MARCH4 57574 genome.wustl.edu 36 2 216850757 216850757 + Missense_Mutation SNP C C T novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 2 216850757 216850757 C T SNP MARCH4 NM_020814 human genbank 54_36p -1 validated missense c.748 p.A250T 1.000 NULL HMMSmart_RINGv,HMMPfam_zf-C3HC4 - no_errors ZNF142 7701 genome.wustl.edu 36 2 219215215 219215215 + Missense_Mutation SNP G G A novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 2 219215215 219215215 G A SNP ZNF142 NM_001105537 human genbank 54_36p -1 validated missense c.4268 p.P1423L 0.944 superfamily_C2H2 and C2HC zinc fingers superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1 - no_errors PI4K2B 55300 genome.wustl.edu 36 4 24869809 24869809 + Frame_Shift_Del DEL T T - novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 4 24869809 24869809 T - DEL PI4K2B NM_018323 human genbank 54_36p +1 validated frame_shift_del c.809 p.R271fs 1.000 HMMPfam_PI3_PI4_kinase PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_PI3_PI4_kinase (deletion:cds_exon[24869757,24869910]) no_errors PNN 5411 genome.wustl.edu 36 14 38719870 38719870 + Frame_Shift_Del DEL C C - novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 14 38719870 38719870 C - DEL PNN NM_002687 human genbank 54_36p +1 validated frame_shift_del c.1206 p.Q403fs 0.998 NULL HMMPfam_Pinin_SDK_N,HMMPfam_Pinin_SDK_memA (deletion:cds_exon[38719458,38720818]) no_errors FLG2 388698 genome.wustl.edu 36 1 150590365 150590365 + Frame_Shift_Del DEL C C - novel unknown TCGA-09-1672-01A-01W-0633-09 TCGA-09-1672-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 94fa8218-12d5-4bca-8d3c-a7527e25e8fe cad85798-3f6e-422f-bd7a-04fe46fdc8c9 1 150590365 150590365 C - DEL FLG2 NM_001014342 human genbank 54_36p -1 provisional frame_shift_del c.6521 p.G2174fs 0.000 NULL superfamily_SSF47473,HMMPfam_S_100,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,HMMPfam_Filaggrin (deletion:cds_exon[150589710,150596747]) no_errors