Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID OR2D2 120776 hgsc.bcm.edu 36 11 6869840 6869840 + Silent SNP A A C novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d RYR1 6261 hgsc.bcm.edu 36 19 43672661 43672661 + Missense_Mutation SNP C C T novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d ATG3 64422 hgsc.bcm.edu 36 3 113763031 113763031 + Missense_Mutation SNP G G A novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d BRWD3 254065 hgsc.bcm.edu 36 X 79875622 79875622 + Silent SNP G G A novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d C14orf118 55668 hgsc.bcm.edu 36 14 75708025 75708025 + Missense_Mutation SNP G G C novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d C3orf20 84077 hgsc.bcm.edu 36 3 14743469 14743469 + Missense_Mutation SNP G G T novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 G G T T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d CD3E 916 hgsc.bcm.edu 36 11 117691453 117691453 + Missense_Mutation SNP C C G novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d GABRE 2564 hgsc.bcm.edu 36 X 150880417 150880417 + Missense_Mutation SNP A A G novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d OLFM1 10439 hgsc.bcm.edu 36 9 137151792 137151792 + Missense_Mutation SNP C C A novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d PLB1 151056 hgsc.bcm.edu 36 2 28702847 28702847 + Missense_Mutation SNP G G T novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d SILV 6490 hgsc.bcm.edu 36 12 54641463 54641463 + Missense_Mutation SNP G G C novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d TP53 7157 hgsc.bcm.edu 36 17 7519280 7519280 + Splice_Site SNP C C A novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d UQCRB 7381 hgsc.bcm.edu 36 8 97316918 97316918 + Missense_Mutation SNP G G C novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d ABCA12 26154 hgsc.bcm.edu 36 2 215622593 215622593 + Splice_Site SNP A A T novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 A A A T A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d APEH 327 hgsc.bcm.edu 36 3 49687675 49687675 + Nonsense_Mutation SNP C C A novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 C C A A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d DNMT1 1786 hgsc.bcm.edu 36 19 10109608 10109608 + Missense_Mutation SNP G G A novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d OCA2 4948 hgsc.bcm.edu 36 15 25870554 25870554 + Missense_Mutation SNP G G C novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d TNS1 7145 hgsc.bcm.edu 36 2 218420723 218420723 + Missense_Mutation SNP T T C novel TCGA-09-1666-01A-01W-0615-10 TCGA-09-1666-10A-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 89624b91-5fc5-4a15-9793-588d7b033703 6a789747-4a8c-4678-ae32-37789b17855d