Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID SMPDL3B 27293 broad.mit.edu 36 1 28153489 28153489 + Silent SNP G G T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 GNL2 29889 broad.mit.edu 36 1 37812874 37812874 + Silent SNP G G A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 ITGA10 8515 broad.mit.edu 36 1 144245273 144245273 + Missense_Mutation SNP G G A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 FAM63A 55793 broad.mit.edu 36 1 149237234 149237234 + Missense_Mutation SNP G G A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 APCS 325 broad.mit.edu 36 1 157824849 157824849 + Silent SNP G G A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 ARHGAP21 57584 broad.mit.edu 36 10 24924689 24924689 + Silent SNP G G C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 CCDC6 8030 broad.mit.edu 36 10 61244452 61244452 + Missense_Mutation SNP A A G novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 A A G G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA;Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 CDC2 0 broad.mit.edu 36 10 62215450 62215450 + Missense_Mutation SNP G G C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA;Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 SUPV3L1 6832 broad.mit.edu 36 10 70621417 70621417 + Missense_Mutation SNP G G T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 PRF1 5551 broad.mit.edu 36 10 72027815 72027815 + Nonstop_Mutation SNP T T A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 SYNPO2L 79933 broad.mit.edu 36 10 75077114 75077114 + Missense_Mutation SNP G G C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 ZNF503 84858 broad.mit.edu 36 10 76828582 76828582 + Silent SNP T T G novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 COX15 1355 broad.mit.edu 36 10 101477240 101477240 + Missense_Mutation SNP C C T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 INSC 387755 broad.mit.edu 36 11 15090605 15090605 + Missense_Mutation SNP C C T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 SDHAF2 54949 broad.mit.edu 36 11 60961684 60961684 + Silent SNP G G T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 KIRREL3 84623 broad.mit.edu 36 11 125821979 125821979 + Missense_Mutation SNP A A T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 TAS2R50 259296 broad.mit.edu 36 12 11030693 11030693 + Missense_Mutation SNP G G C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 EEA1 8411 broad.mit.edu 36 12 91716817 91716817 + Silent SNP T T C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 CUX2 23316 broad.mit.edu 36 12 110260538 110260538 + Missense_Mutation SNP C C T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 KNTC1 9735 broad.mit.edu 36 12 121623710 121623710 + Silent SNP C C A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 HECTD1 25831 broad.mit.edu 36 14 30653011 30653011 + Missense_Mutation SNP G G C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 EIF2S1 1965 broad.mit.edu 36 14 66901240 66901240 + Missense_Mutation SNP G G T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 CCDC88C 440193 broad.mit.edu 36 14 90825370 90825370 + Missense_Mutation SNP G G A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 DISP2 85455 broad.mit.edu 36 15 38448827 38448827 + Silent SNP C C A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 VPS39 23339 broad.mit.edu 36 15 40267316 40267316 + Missense_Mutation SNP T T C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 DUOX1 53905 broad.mit.edu 36 15 43231933 43231933 + Silent SNP C C G novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 NR2F2 7026 broad.mit.edu 36 15 94676663 94676663 + Missense_Mutation SNP A A T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 MSLNL 401827 broad.mit.edu 36 16 770434 770434 + Missense_Mutation SNP G G T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 PRSS21 10942 broad.mit.edu 36 16 2811384 2811384 + Missense_Mutation SNP C C G novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 DNAH3 55567 broad.mit.edu 36 16 20906662 20906662 + Missense_Mutation SNP T T C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 SLC5A11 115584 broad.mit.edu 36 16 24809691 24809691 + Missense_Mutation SNP G G T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 CES3 23491 broad.mit.edu 36 16 65558184 65558184 + Missense_Mutation SNP A A G novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 A A G G A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 TXNL4B 54957 broad.mit.edu 36 16 70678142 70678142 + Missense_Mutation SNP C C A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 ANKRD11 29123 broad.mit.edu 36 16 87875898 87875898 + Missense_Mutation SNP G G C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 TP53 7157 broad.mit.edu 36 17 7518284 7518284 + Missense_Mutation SNP G G A rs28934573 unknown TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 NF1 4763 broad.mit.edu 36 17 26514375 26514375 + Nonsense_Mutation SNP C C T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 CIC 23152 broad.mit.edu 36 19 47482805 47482805 + Missense_Mutation SNP G G C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 SIGLEC11 114132 broad.mit.edu 36 19 55155842 55155842 + Missense_Mutation SNP G G C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 PEG3 5178 broad.mit.edu 36 19 62024923 62024923 + Missense_Mutation SNP G G A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 NPHP1 4867 broad.mit.edu 36 2 110279507 110279507 + Missense_Mutation SNP A A C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 CYTIP 9595 broad.mit.edu 36 2 157980773 157980773 + Missense_Mutation SNP T T A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 TANC1 85461 broad.mit.edu 36 2 159743390 159743390 + Silent SNP G G A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 FASTKD1 79675 broad.mit.edu 36 2 170102011 170102011 + Silent SNP C C T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 IRS1 3667 broad.mit.edu 36 2 227368238 227368238 + Missense_Mutation SNP C C A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 COL6A3 1293 broad.mit.edu 36 2 237952151 237952151 + Missense_Mutation SNP C C A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 CLIC6 54102 broad.mit.edu 36 21 35002123 35002123 + Missense_Mutation SNP A A T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 DSCAM 1826 broad.mit.edu 36 21 40379537 40379537 + Missense_Mutation SNP T T A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 ITGB2 3689 broad.mit.edu 36 21 45143505 45143505 + Missense_Mutation SNP C C G novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 ISX 91464 broad.mit.edu 36 22 33811585 33811585 + Missense_Mutation SNP C C A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 GGA1 26088 broad.mit.edu 36 22 36351895 36351895 + Missense_Mutation SNP G G A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 ATXN10 25814 broad.mit.edu 36 22 44467611 44467611 + Missense_Mutation SNP C C G novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 CELSR3 1951 broad.mit.edu 36 3 48672381 48672381 + Silent SNP C C A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 SLC38A3 10991 broad.mit.edu 36 3 50232512 50232512 + Missense_Mutation SNP C C A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 EPHA3 2042 broad.mit.edu 36 3 89539205 89539205 + Missense_Mutation SNP T T A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 T T A A T T Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 KIAA2018 205717 broad.mit.edu 36 3 114862666 114862666 + Missense_Mutation SNP G G C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 LRRC31 79782 broad.mit.edu 36 3 171061159 171061159 + Missense_Mutation SNP T T C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 DLG1 1739 broad.mit.edu 36 3 198276997 198276997 + Missense_Mutation SNP T T C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 IQGAP2 10788 broad.mit.edu 36 5 75902200 75902200 + Nonsense_Mutation SNP C C T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 ADAM19 8728 broad.mit.edu 36 5 156865338 156865338 + Missense_Mutation SNP G G T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 TNXB 7148 broad.mit.edu 36 6 32155002 32155002 + Silent SNP C C T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 B3GAT2 135152 broad.mit.edu 36 6 71628310 71628310 + Missense_Mutation SNP G G C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 TRIL 9865 broad.mit.edu 36 7 28963656 28963656 + Silent SNP A A G novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 SCRN1 9805 broad.mit.edu 36 7 29946841 29946841 + Missense_Mutation SNP T T A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 HERPUD2 64224 broad.mit.edu 36 7 35641357 35641357 + Missense_Mutation SNP C C T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 MUC17 140453 broad.mit.edu 36 7 100469992 100469992 + Missense_Mutation SNP G G A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 CUX1 1523 broad.mit.edu 36 7 101346125 101346125 + Missense_Mutation SNP A A T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 FLJ23834 222256 broad.mit.edu 36 7 105442888 105442888 + Nonsense_Mutation SNP C C G novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 NRCAM 4897 broad.mit.edu 36 7 107612214 107612214 + Missense_Mutation SNP T T C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 RP1 6101 broad.mit.edu 36 8 55704383 55704383 + Silent SNP G G T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 MYBL1 4603 broad.mit.edu 36 8 67639598 67639598 + Missense_Mutation SNP T T C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 FAM83A 84985 broad.mit.edu 36 8 124264603 124264603 + Missense_Mutation SNP C C T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 FER1L6 654463 broad.mit.edu 36 8 125176440 125176440 + Missense_Mutation SNP G G T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 SECISBP2 79048 broad.mit.edu 36 9 91130309 91130309 + Missense_Mutation SNP G G C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 IKBKAP 8518 broad.mit.edu 36 9 110710486 110710486 + Missense_Mutation SNP G G T novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 FKBP15 23307 broad.mit.edu 36 9 114989906 114989906 + Silent SNP G G C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 ARL13A 392509 broad.mit.edu 36 X 100129873 100129873 + Missense_Mutation SNP G G C novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 F8 2157 broad.mit.edu 36 X 153810116 153810116 + Nonsense_Mutation SNP G G A novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 SEC16B 89866 broad.mit.edu 36 1 176194718 176194728 + Frame_Shift_Del DEL CTTATGTACAT - CTTATGTACAT novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 CTTATGTACAT CTTATGTACAT - - CTTATGTACAT CTTATGTACAT Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 DHX9 1660 broad.mit.edu 36 1 181089175 181089189 + Splice_Site DEL CGGTAAGGCCAGCAC - CGGTAAGGCCAGCAC novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 CGGTAAGGCCAGCAC CGGTAAGGCCAGCAC - - CGGTAAGGCCAGCAC CGGTAAGGCCAGCAC Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 HEPHL1 341208 broad.mit.edu 36 11 93458971 93458978 + Frame_Shift_Del DEL CCACAACA - CCACAACA novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 CCACAACA CCACAACA - - CCACAACA CCACAACA Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635 KRT82 3888 broad.mit.edu 36 12 51083809 51083821 + Frame_Shift_Del DEL ACGCGGTCCCCGG - ACGCGGTCCCCGG novel none TCGA-04-1367-01A-01W-0492-08 TCGA-04-1367-10A-01W-0492-08 ACGCGGTCCCCGG ACGCGGTCCCCGG - - ACGCGGTCCCCGG ACGCGGTCCCCGG Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 7613dcfe-6866-4b7a-8567-0cc4a9c6c40e 30e559be-9316-4c86-88c9-a5ea0a9cb635