Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context NADK 65220 broad.mit.edu 36 1 1675976 1675976 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1675976 1675976 NADK 1 C C T 23 SLC45A1 50651 broad.mit.edu 36 1 8322189 8322189 + Silent SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 8322189 8322189 SLC45A1 1 C C T 29 SNHG3-RCC1 1104 broad.mit.edu 36 1 28735875 28735875 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 28735875 28735875 SNHG3-RCC1 1 T T G 57 GADD45A 1647 broad.mit.edu 36 1 67924773 67924773 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 67924773 67924773 GADD45A 1 A A G 11 FMO5 2330 broad.mit.edu 36 1 145139682 145139682 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 145139682 145139682 FMO5 1 C C T 29 BNIPL 149428 broad.mit.edu 36 1 149277646 149277646 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 149277646 149277646 BNIPL 1 C C A 18 FLG 2312 broad.mit.edu 36 1 150552420 150552420 + Silent SNP T T G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 150552420 150552420 FLG 1 T T G 63 BCAN 63827 broad.mit.edu 36 1 154895500 154895500 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 154895500 154895500 BCAN 1 C C A 19 CDH23 64072 broad.mit.edu 36 10 73134685 73134685 + Silent SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 73134685 73134685 CDH23 10 C C T 31 SPOCK2 9806 broad.mit.edu 36 10 73496817 73496817 + Silent SNP G G A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 73496817 73496817 SPOCK2 10 G G A 47 LGI1 9211 broad.mit.edu 36 10 95542597 95542597 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 95542597 95542597 LGI1 10 C C G 21 SBF2 81846 broad.mit.edu 36 11 9834830 9834830 + Missense_Mutation SNP T T A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 9834830 9834830 SBF2 11 T T A 50 NRXN2 9379 broad.mit.edu 36 11 64184952 64184952 + Silent SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 64184952 64184952 NRXN2 11 C C T 22 CPT1A 1374 broad.mit.edu 36 11 68308909 68308909 + Silent SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 68308909 68308909 CPT1A 11 C C T 23 GRAMD1B 57476 broad.mit.edu 36 11 122979344 122979344 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 122979344 122979344 GRAMD1B 11 C C T 26 R3HDM2 22864 broad.mit.edu 36 12 55934959 55934959 + Missense_Mutation SNP A A C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55934959 55934959 R3HDM2 12 A A C 4 NT5DC3 51559 broad.mit.edu 36 12 102695829 102695829 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102695829 102695829 NT5DC3 12 G G C 39 RCBTB2 1102 broad.mit.edu 36 13 47975029 47975029 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47975029 47975029 RCBTB2 13 G G A 45 FBXO34 55030 broad.mit.edu 36 14 54887810 54887810 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54887810 54887810 FBXO34 14 C C A 28 SPTB 6710 broad.mit.edu 36 14 64333106 64333106 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64333106 64333106 SPTB 14 C C A 28 YLPM1 56252 broad.mit.edu 36 14 74335565 74335565 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74335565 74335565 YLPM1 14 A A T 10 RCOR1 23186 broad.mit.edu 36 14 102237370 102237370 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102237370 102237370 RCOR1 14 G G C 41 GCOM1 145781 broad.mit.edu 36 15 55713220 55713220 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55713220 55713220 GCOM1 15 C C T 27 ISLR2 57611 broad.mit.edu 36 15 72213827 72213827 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 72213827 72213827 ISLR2 15 C C G 23 SYNM 23336 broad.mit.edu 36 15 97489608 97489608 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 97489608 97489608 SYNM 15 G G T 48 IFT140 9742 broad.mit.edu 36 16 1574422 1574422 + Missense_Mutation SNP A A C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1574422 1574422 IFT140 16 A A C 6 ANKS4B 257629 broad.mit.edu 36 16 21169284 21169284 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21169284 21169284 ANKS4B 16 C C G 22 HS3ST4 9951 broad.mit.edu 36 16 25611891 25611891 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 25611891 25611891 HS3ST4 16 C C G 23 TP53 7157 broad.mit.edu 36 17 7517866 7517866 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7517866 7517866 TP53 17 C C A 30 RAI1 10743 broad.mit.edu 36 17 17641239 17641239 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 17641239 17641239 RAI1 17 C C G 20 VTN 7448 broad.mit.edu 36 17 23720126 23720126 + Silent SNP G G C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 23720126 23720126 VTN 17 G G C 43 IKZF3 22806 broad.mit.edu 36 17 35175608 35175608 + Silent SNP A A G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 35175608 35175608 IKZF3 17 A A G 11 STAT5A 6776 broad.mit.edu 36 17 37713174 37713174 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37713174 37713174 STAT5A 17 G G A 37 ITGB4 3691 broad.mit.edu 36 17 71235413 71235413 + Silent SNP T T C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 71235413 71235413 ITGB4 17 T T C 52 QRICH2 84074 broad.mit.edu 36 17 71801356 71801357 + Missense_Mutation DNP GG GG AA novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 71801356 71801357 QRICH2 17 GG GG AA 35 SPHK1 8877 broad.mit.edu 36 17 71894576 71894576 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71894576 71894576 SPHK1 17 A A G 6 AFG3L2 10939 broad.mit.edu 36 18 12319615 12319615 + Silent SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 12319615 12319615 AFG3L2 18 C C T 24 MYO5B 4645 broad.mit.edu 36 18 45675482 45675482 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45675482 45675482 MYO5B 18 C C T 30 SERPINB3 6317 broad.mit.edu 36 18 59477628 59477628 + Silent SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 59477628 59477628 SERPINB3 18 C C T 19 KCNN1 3780 broad.mit.edu 36 19 17953529 17953529 + Silent SNP G G T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 17953529 17953529 KCNN1 19 G G T 47 GSK3A 2931 broad.mit.edu 36 19 47426792 47426792 + Silent SNP G G A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 47426792 47426792 GSK3A 19 G G A 35 CEACAM1 634 broad.mit.edu 36 19 47718178 47718178 + Silent SNP G G A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 47718178 47718178 CEACAM1 19 G G A 35 PSG11 5680 broad.mit.edu 36 19 48214999 48214999 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48214999 48214999 PSG11 19 G G C 43 CBLC 23624 broad.mit.edu 36 19 49976091 49976092 + Missense_Mutation DNP TG TG GA novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 49976091 49976092 CBLC 19 TG TG GA 51 SLC27A5 10998 broad.mit.edu 36 19 63701781 63701781 + Silent SNP C C A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 63701781 63701781 SLC27A5 19 C C A 17 TMEM131 23505 broad.mit.edu 36 2 97775756 97775756 + Missense_Mutation SNP A A C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 97775756 97775756 TMEM131 2 A A C 10 MYO3B 140469 broad.mit.edu 36 2 170969051 170969051 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 170969051 170969051 MYO3B 2 G G C 41 PDXK 8566 broad.mit.edu 36 21 44000290 44000290 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44000290 44000290 PDXK 21 C C G 22 MCM3AP 8888 broad.mit.edu 36 21 46501213 46501213 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 46501213 46501213 MCM3AP 21 C C T 32 CCT8L2 150160 broad.mit.edu 36 22 15452656 15452656 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15452656 15452656 CCT8L2 22 G G C 33 ZNF280B 140883 broad.mit.edu 36 22 21172614 21172614 + Silent SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 21172614 21172614 ZNF280B 22 C C T 28 GAS2L1 10634 broad.mit.edu 36 22 28037931 28037931 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 28037931 28037931 GAS2L1 22 C C G 21 NR1D2 9975 broad.mit.edu 36 3 23993837 23993837 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23993837 23993837 NR1D2 3 C C A 28 MAGI1 9223 broad.mit.edu 36 3 65317511 65317511 + Missense_Mutation SNP T T A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 65317511 65317511 MAGI1 3 T T A 54 MYH15 22989 broad.mit.edu 36 3 109600241 109600241 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 109600241 109600241 MYH15 3 C C T 19 ALDH1L1 10840 broad.mit.edu 36 3 127325902 127325902 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 127325902 127325902 ALDH1L1 3 C C T 30 PLCH1 23007 broad.mit.edu 36 3 156682854 156682854 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 156682854 156682854 PLCH1 3 A A G 5 SLITRK3 22865 broad.mit.edu 36 3 166388411 166388411 + Nonsense_Mutation SNP C C A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 166388411 166388411 SLITRK3 3 C C A 31 ETV5 2119 broad.mit.edu 36 3 187305975 187305975 + Silent SNP T T A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 187305975 187305975 ETV5 3 T T A 49 BOD1L 259282 broad.mit.edu 36 4 13213992 13213992 + Missense_Mutation SNP T T A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13213992 13213992 BOD1L 4 T T A 64 CD38 952 broad.mit.edu 36 4 15444986 15444986 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15444986 15444986 CD38 4 A A T 2 BMP3 651 broad.mit.edu 36 4 82186163 82186163 + Silent SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 82186163 82186163 BMP3 4 C C T 21 LARP7 51574 broad.mit.edu 36 4 113788063 113788063 + Missense_Mutation SNP T T A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113788063 113788063 LARP7 4 T T A 51 ANK2 287 broad.mit.edu 36 4 114381120 114381120 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 114381120 114381120 ANK2 4 C C T 17 ANK2 287 broad.mit.edu 36 4 114415178 114415178 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 114415178 114415178 ANK2 4 T T G 50 TLL1 7092 broad.mit.edu 36 4 167144075 167144075 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 167144075 167144075 TLL1 4 G G T 48 RGNEF 64283 broad.mit.edu 36 5 73223696 73223696 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73223696 73223696 RGNEF 5 A A G 11 ZNF608 57507 broad.mit.edu 36 5 124012715 124012715 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 124012715 124012715 ZNF608 5 A A T 10 FSTL4 23105 broad.mit.edu 36 5 132764353 132764353 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 132764353 132764353 FSTL4 5 G G A 47 CATSPER3 347732 broad.mit.edu 36 5 134333576 134333576 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 134333576 134333576 CATSPER3 5 C C G 26 PURA 5813 broad.mit.edu 36 5 139474425 139474425 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 139474425 139474425 PURA 5 C C T 32 PCDHA10 56139 broad.mit.edu 36 5 140217167 140217167 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140217167 140217167 PCDHA10 5 C C G 19 CAMK2A 815 broad.mit.edu 36 5 149610024 149610024 + Silent SNP G G A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 149610024 149610024 CAMK2A 5 G G A 39 GABBR1 2550 broad.mit.edu 36 6 29697532 29697532 + Silent SNP A A G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 29697532 29697532 GABBR1 6 A A G 7 NOTCH4 4855 broad.mit.edu 36 6 32297029 32297029 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32297029 32297029 NOTCH4 6 C C T 30 AARS2 57505 broad.mit.edu 36 6 44379046 44379046 + Silent SNP G G A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 44379046 44379046 AARS2 6 G G A 43 ROS1 6098 broad.mit.edu 36 6 117780972 117780972 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 117780972 117780972 ROS1 6 T T C 51 AKAP7 9465 broad.mit.edu 36 6 131532090 131532090 + Silent SNP A A T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 131532090 131532090 AKAP7 6 A A T 6 SHPRH 257218 broad.mit.edu 36 6 146297985 146297985 + Missense_Mutation SNP A A C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 146297985 146297985 SHPRH 6 A A C 16 SYNE1 23345 broad.mit.edu 36 6 152564686 152564686 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 152564686 152564686 SYNE1 6 T T C 51 SP4 6671 broad.mit.edu 36 7 21488152 21488152 + Nonsense_Mutation SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 21488152 21488152 SP4 7 C C T 19 HOXA1 3198 broad.mit.edu 36 7 27101805 27101805 + Silent SNP C C A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 27101805 27101805 HOXA1 7 C C A 30 HECW1 23072 broad.mit.edu 36 7 43548047 43548047 + Silent SNP G G A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 43548047 43548047 HECW1 7 G G A 46 EPHB4 2050 broad.mit.edu 36 7 100259367 100259367 + Silent SNP G G T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 100259367 100259367 EPHB4 7 G G T 38 CADPS2 93664 broad.mit.edu 36 7 121843447 121843447 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 121843447 121843447 CADPS2 7 C C A 29 SPAM1 6677 broad.mit.edu 36 7 123381728 123381728 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 123381728 123381728 SPAM1 7 A A G 5 DOCK5 80005 broad.mit.edu 36 8 25157106 25157106 + Splice_Site_SNP SNP G G A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 25157106 25157106 DOCK5 8 G G A 34 TG 7038 broad.mit.edu 36 8 134004768 134004768 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 134004768 134004768 TG 8 T T C 58 PTAR1 375743 broad.mit.edu 36 9 71523211 71523211 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71523211 71523211 PTAR1 9 G G C 40 OR13F1 138805 broad.mit.edu 36 9 106307154 106307154 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 106307154 106307154 OR13F1 9 G G A 38 COL27A1 85301 broad.mit.edu 36 9 116013085 116013085 + Silent SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 116013085 116013085 COL27A1 9 C C T 26 DEC1 50514 broad.mit.edu 36 9 117203399 117203399 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 117203399 117203399 DEC1 9 C C A 25 OR1L8 138881 broad.mit.edu 36 9 124370150 124370150 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 124370150 124370150 OR1L8 9 A A G 10 ZNF79 7633 broad.mit.edu 36 9 129246967 129246967 + Silent SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 129246967 129246967 ZNF79 9 C C T 17 C9orf78 51759 broad.mit.edu 36 9 131637305 131637305 + Missense_Mutation SNP T T G novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 131637305 131637305 C9orf78 9 T T G 56 CAMSAP1 157922 broad.mit.edu 36 9 137853823 137853823 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 137853823 137853823 CAMSAP1 9 G G C 46 NOTCH1 4851 broad.mit.edu 36 9 138510902 138510902 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 138510902 138510902 NOTCH1 9 G G T 46 DPP7 29952 broad.mit.edu 36 9 139127677 139127677 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 139127677 139127677 DPP7 9 G G A 46 FAM47A 158724 broad.mit.edu 36 X 34059642 34059642 + Silent SNP C C T novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 34059642 34059642 FAM47A 23 C C T 23 B3GNT7 93010 broad.mit.edu 36 2 231971623 231971624 + In_Frame_Ins INS - GCG - novel Unknown TCGA-61-2113-01 TCGA-61-2113-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Ins INS 231971623 231971624 B3GNT7 2 - GCG - 55