Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context KANK4 163782 broad.mit.edu 36 1 62512126 62512126 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62512126 62512126 KANK4 1 A A T 8 MCOLN2 255231 broad.mit.edu 36 1 85169786 85169786 + Silent SNP A A G novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 85169786 85169786 MCOLN2 1 A A G 8 RBM15 64783 broad.mit.edu 36 1 110685238 110685238 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 110685238 110685238 RBM15 1 G G C 44 OR10J3 441911 broad.mit.edu 36 1 157550844 157550844 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 157550844 157550844 OR10J3 1 G G T 42 TOR1AIP2 163590 broad.mit.edu 36 1 178086742 178086742 + Silent SNP G G C novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 178086742 178086742 TOR1AIP2 1 G G C 43 KIF21B 23046 broad.mit.edu 36 1 199239430 199239430 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 199239430 199239430 KIF21B 1 C C G 24 CUL2 8453 broad.mit.edu 36 10 35357789 35357789 + Silent SNP T T C novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 35357789 35357789 CUL2 10 T T C 51 ERCC6 2074 broad.mit.edu 36 10 50408893 50408893 + Splice_Site_SNP SNP C C A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 50408893 50408893 ERCC6 10 C C A 24 AGAP8 728404 broad.mit.edu 36 10 50895056 50895056 + Silent SNP G G T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 50895056 50895056 AGAP8 10 G G T 35 ATRNL1 26033 broad.mit.edu 36 10 117016300 117016300 + Silent SNP C C T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 117016300 117016300 ATRNL1 10 C C T 30 OS9 10956 broad.mit.edu 36 12 56398319 56398319 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56398319 56398319 OS9 12 G G C 41 ATP12A 479 broad.mit.edu 36 13 24172938 24172938 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 24172938 24172938 ATP12A 13 G G T 45 MYO16 23026 broad.mit.edu 36 13 108591694 108591694 + Silent SNP C C T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 108591694 108591694 MYO16 13 C C T 23 GOLGA5 9950 broad.mit.edu 36 14 92352502 92352502 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 92352502 92352502 GOLGA5 14 C C T 28 KIAA1409 57578 broad.mit.edu 36 14 93179705 93179705 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 93179705 93179705 KIAA1409 14 G G C 47 IQCH 64799 broad.mit.edu 36 15 65573686 65573686 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 65573686 65573686 IQCH 15 C C T 24 BLM 641 broad.mit.edu 36 15 89153454 89153454 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 89153454 89153454 BLM 15 A A G 12 CCNF 899 broad.mit.edu 36 16 2443301 2443301 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2443301 2443301 CCNF 16 G G A 34 TEKT5 146279 broad.mit.edu 36 16 10628963 10628963 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10628963 10628963 TEKT5 16 G G A 39 ITGAL 3683 broad.mit.edu 36 16 30414944 30414944 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30414944 30414944 ITGAL 16 T T C 55 IRX6 79190 broad.mit.edu 36 16 53919112 53919112 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53919112 53919112 IRX6 16 A A T 3 GFOD2 81577 broad.mit.edu 36 16 66277099 66277099 + Silent SNP C C A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 66277099 66277099 GFOD2 16 C C A 21 DHODH 1723 broad.mit.edu 36 16 70603664 70603664 + Splice_Site_SNP SNP T T A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 70603664 70603664 DHODH 16 T T A 57 MYBBP1A 10514 broad.mit.edu 36 17 4389768 4389768 + Silent SNP C C T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 4389768 4389768 MYBBP1A 17 C C T 30 ZNF652 22834 broad.mit.edu 36 17 44749439 44749439 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44749439 44749439 ZNF652 17 A A T 6 MYCBPAP 84073 broad.mit.edu 36 17 45951058 45951058 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45951058 45951058 MYCBPAP 17 G G C 39 ICAM2 3384 broad.mit.edu 36 17 59436313 59436313 + Nonsense_Mutation SNP G G A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 59436313 59436313 ICAM2 17 G G A 48 BPTF 2186 broad.mit.edu 36 17 63338212 63338212 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 63338212 63338212 BPTF 17 G G T 33 CLUL1 27098 broad.mit.edu 36 18 635002 635002 + Silent SNP C C G novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 635002 635002 CLUL1 18 C C G 29 INSR 3643 broad.mit.edu 36 19 7094008 7094008 + Silent SNP G G A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 7094008 7094008 INSR 19 G G A 38 EPOR 2057 broad.mit.edu 36 19 11349790 11349790 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11349790 11349790 EPOR 19 G G A 36 DHX34 9704 broad.mit.edu 36 19 52548282 52548282 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52548282 52548282 DHX34 19 A A T 7 FAM179A 165186 broad.mit.edu 36 2 29093546 29093546 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29093546 29093546 FAM179A 2 C C A 32 RIF1 55183 broad.mit.edu 36 2 152002102 152002102 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 152002102 152002102 RIF1 2 G G C 33 MARS2 92935 broad.mit.edu 36 2 198279265 198279265 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 198279265 198279265 MARS2 2 C C G 29 UGT1A9 54600 broad.mit.edu 36 2 234245714 234245714 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 234245714 234245714 UGT1A9 2 A A T 1 SCLY 51540 broad.mit.edu 36 2 238667798 238667798 + Splice_Site_SNP SNP A A C novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 238667798 238667798 SCLY 2 A A C 7 SYCP2 10388 broad.mit.edu 36 20 57882379 57882379 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 57882379 57882379 SYCP2 20 G G A 45 PIWIL3 440822 broad.mit.edu 36 22 23480089 23480089 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23480089 23480089 PIWIL3 22 C C G 31 PLXNB1 5364 broad.mit.edu 36 3 48436043 48436043 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48436043 48436043 PLXNB1 3 T T C 51 EPHB1 2047 broad.mit.edu 36 3 136153305 136153305 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 136153305 136153305 EPHB1 3 G G A 38 NLGN1 22871 broad.mit.edu 36 3 175008283 175008283 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 175008283 175008283 NLGN1 3 G G C 40 BDH1 622 broad.mit.edu 36 3 198757635 198757635 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 198757635 198757635 BDH1 3 C C A 30 GPRIN3 285513 broad.mit.edu 36 4 90389105 90389105 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 90389105 90389105 GPRIN3 4 T T C 51 SEC24B 10427 broad.mit.edu 36 4 110646977 110646977 + Silent SNP G G A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 110646977 110646977 SEC24B 4 G G A 45 BBS7 55212 broad.mit.edu 36 4 122989531 122989531 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 122989531 122989531 BBS7 4 C C G 17 NNT 23530 broad.mit.edu 36 5 43691814 43691814 + Missense_Mutation SNP A A T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43691814 43691814 NNT 5 A A T 4 GTF2H4 2968 broad.mit.edu 36 6 30988154 30988154 + Silent SNP G G T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 30988154 30988154 GTF2H4 6 G G T 47 DOPEY1 23033 broad.mit.edu 36 6 83920651 83920651 + Missense_Mutation SNP T T A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 83920651 83920651 DOPEY1 6 T T A 51 SYNE1 23345 broad.mit.edu 36 6 152599766 152599766 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 152599766 152599766 SYNE1 6 T T C 51 WDR27 253769 broad.mit.edu 36 6 169801541 169801541 + Splice_Site_SNP SNP T T G novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 169801541 169801541 WDR27 6 T T G 56 HGF 3082 broad.mit.edu 36 7 81196910 81196910 + Nonsense_Mutation SNP C C T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 81196910 81196910 HGF 7 C C T 22 CNTNAP2 26047 broad.mit.edu 36 7 146967232 146967232 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 146967232 146967232 CNTNAP2 7 G G A 38 LONRF1 91694 broad.mit.edu 36 8 12624987 12624987 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12624987 12624987 LONRF1 8 G G T 47 TOPORS 10210 broad.mit.edu 36 9 32533969 32533969 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32533969 32533969 TOPORS 9 G G T 48 COL15A1 1306 broad.mit.edu 36 9 100869130 100869130 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100869130 100869130 COL15A1 9 G G T 35 BAT2L1 84726 broad.mit.edu 36 9 133297870 133297870 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 133297870 133297870 BAT2L1 9 C C A 26 KLHL34 257240 broad.mit.edu 36 X 21584171 21584171 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21584171 21584171 KLHL34 23 G G C 37 SMS 6611 broad.mit.edu 36 X 21905271 21905271 + Silent SNP T T C novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 21905271 21905271 SMS 23 T T C 51 OGT 8473 broad.mit.edu 36 X 70693810 70693810 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70693810 70693810 OGT 23 C C A 19 TP53 7157 broad.mit.edu 36 17 7520060 7520061 + Frame_Shift_Ins INS - C - novel Unknown TCGA-61-2008-01 TCGA-61-2008-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 7520060 7520061 TP53 17 - C - 58