Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context CASZ1 54897 broad.mit.edu 36 1 10636042 10636042 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10636042 10636042 CASZ1 1 G G C 42 ST6GALNAC3 256435 broad.mit.edu 36 1 76650491 76650491 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 76650491 76650491 ST6GALNAC3 1 T T C 61 SEMA6C 10500 broad.mit.edu 36 1 149377178 149377178 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 149377178 149377178 SEMA6C 1 G G C 38 PVRL4 81607 broad.mit.edu 36 1 159314045 159314045 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 159314045 159314045 PVRL4 1 G G T 48 LPGAT1 9926 broad.mit.edu 36 1 210023255 210023255 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 210023255 210023255 LPGAT1 1 C C G 29 HSPA14 51182 broad.mit.edu 36 10 14937856 14937856 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 14937856 14937856 HSPA14 10 G G C 45 TCF7L2 6934 broad.mit.edu 36 10 114895812 114895812 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 114895812 114895812 TCF7L2 10 C C A 22 CLNS1A 1207 broad.mit.edu 36 11 77018591 77018591 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 77018591 77018591 CLNS1A 11 G G A 39 PKNOX2 63876 broad.mit.edu 36 11 124726450 124726450 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 124726450 124726450 PKNOX2 11 G G C 45 A2ML1 144568 broad.mit.edu 36 12 8882236 8882236 + Missense_Mutation SNP T T A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8882236 8882236 A2ML1 12 T T A 51 OSBPL8 114882 broad.mit.edu 36 12 75315633 75315633 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 75315633 75315633 OSBPL8 12 G G T 35 PLA2G4F 255189 broad.mit.edu 36 15 40229594 40229594 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40229594 40229594 PLA2G4F 15 C C G 24 C15orf42 90381 broad.mit.edu 36 15 87968998 87968998 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 87968998 87968998 C15orf42 15 G G C 36 WDR93 56964 broad.mit.edu 36 15 88077313 88077313 + Nonsense_Mutation SNP C C A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 88077313 88077313 WDR93 15 C C A 31 DNAH3 55567 broad.mit.edu 36 16 20882913 20882913 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 20882913 20882913 DNAH3 16 G G A 41 JMJD5 79831 broad.mit.edu 36 16 27129149 27129149 + Silent SNP C C T novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 27129149 27129149 JMJD5 16 C C T 27 ANKFY1 51479 broad.mit.edu 36 17 4092424 4092424 + Silent SNP G G A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 4092424 4092424 ANKFY1 17 G G A 34 TP53 7157 broad.mit.edu 36 17 7518964 7518964 + Nonsense_Mutation SNP C C A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 7518964 7518964 TP53 17 C C A 30 ADAP2 55803 broad.mit.edu 36 17 26277992 26277992 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26277992 26277992 ADAP2 17 C C T 24 PSMD11 5717 broad.mit.edu 36 17 27815669 27815669 + Silent SNP G G A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 27815669 27815669 PSMD11 17 G G A 48 GPR179 440435 broad.mit.edu 36 17 33748892 33748892 + Missense_Mutation SNP G G C novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 33748892 33748892 GPR179 17 G G C 45 CTAGE1 64693 broad.mit.edu 36 18 18251045 18251045 + Missense_Mutation SNP T T C novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18251045 18251045 CTAGE1 18 T T C 56 GP6 51206 broad.mit.edu 36 19 60217703 60217703 + Silent SNP C C T novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 60217703 60217703 GP6 19 C C T 25 EPAS1 2034 broad.mit.edu 36 2 46459304 46459304 + Missense_Mutation SNP A A G novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 46459304 46459304 EPAS1 2 A A G 4 IL18R1 8809 broad.mit.edu 36 2 102350806 102350806 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102350806 102350806 IL18R1 2 G G A 45 NCKAP5 344148 broad.mit.edu 36 2 133257527 133257527 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 133257527 133257527 NCKAP5 2 C C A 20 TTN 7273 broad.mit.edu 36 2 179123136 179123136 + Missense_Mutation SNP T T A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 179123136 179123136 TTN 2 T T A 60 TMPRSS2 7113 broad.mit.edu 36 21 41791942 41791942 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41791942 41791942 TMPRSS2 21 C C G 29 TRPM2 7226 broad.mit.edu 36 21 44623320 44623320 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44623320 44623320 TRPM2 21 G G A 38 GRAMD1C 54762 broad.mit.edu 36 3 115105755 115105755 + Silent SNP A A G novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 115105755 115105755 GRAMD1C 3 A A G 4 STXBP5L 9515 broad.mit.edu 36 3 122246975 122246975 + Missense_Mutation SNP G G T novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 122246975 122246975 STXBP5L 3 G G T 46 MAGEF1 64110 broad.mit.edu 36 3 185912104 185912104 + Nonsense_Mutation SNP A A T novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 185912104 185912104 MAGEF1 3 A A T 5 LEPREL1 55214 broad.mit.edu 36 3 191320765 191320765 + Silent SNP G G C novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 191320765 191320765 LEPREL1 3 G G C 35 UBE2CBP 90025 broad.mit.edu 36 6 83723832 83723832 + Missense_Mutation SNP G G A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 83723832 83723832 UBE2CBP 6 G G A 46 HEATR2 54919 broad.mit.edu 36 7 791754 791754 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 791754 791754 HEATR2 7 C C A 23 GTF2IRD2 84163 broad.mit.edu 36 7 73849753 73849753 + Silent SNP C C T novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 73849753 73849753 GTF2IRD2 7 C C T 29 MUC17 140453 broad.mit.edu 36 7 100470834 100470834 + Silent SNP T T A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 100470834 100470834 MUC17 7 T T A 53 NRG1 3084 broad.mit.edu 36 8 32741319 32741319 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32741319 32741319 NRG1 8 C C G 22 ANK1 286 broad.mit.edu 36 8 41662847 41662847 + Missense_Mutation SNP C C T novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41662847 41662847 ANK1 8 C C T 19 ZNF16 7564 broad.mit.edu 36 8 146128093 146128093 + Missense_Mutation SNP C C A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 146128093 146128093 ZNF16 8 C C A 17 ZNF16 7564 broad.mit.edu 36 8 146128165 146128165 + Missense_Mutation SNP C C G novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 146128165 146128165 ZNF16 8 C C G 22 WNK3 65267 broad.mit.edu 36 X 54276084 54276084 + Nonsense_Mutation SNP G G A novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 54276084 54276084 WNK3 23 G G A 47 KIAA2022 340533 broad.mit.edu 36 X 73877895 73877895 + Silent SNP C C T novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 73877895 73877895 KIAA2022 23 C C T 23 COLEC12 81035 broad.mit.edu 36 18 324971 324972 + Frame_Shift_Ins INS - G - novel Unknown TCGA-61-2002-01 TCGA-61-2002-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 324971 324972 COLEC12 18 - G - 23