Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context KIAA0754 643314 broad.mit.edu 36 1 39651979 39651979 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39651979 39651979 KIAA0754 1 C C T 18 OR10T2 128360 broad.mit.edu 36 1 156635826 156635826 + Missense_Mutation SNP A A G novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 156635826 156635826 OR10T2 1 A A G 11 F5 2153 broad.mit.edu 36 1 167785707 167785707 + Missense_Mutation SNP G G T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 167785707 167785707 F5 1 G G T 36 SFMBT2 57713 broad.mit.edu 36 10 7279552 7279552 + Silent SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 7279552 7279552 SFMBT2 10 C C T 23 CNNM1 26507 broad.mit.edu 36 10 101137749 101137749 + Silent SNP G G A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 101137749 101137749 CNNM1 10 G G A 40 CCDC147 159686 broad.mit.edu 36 10 106111810 106111810 + Missense_Mutation SNP G G T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 106111810 106111810 CCDC147 10 G G T 45 SORCS1 114815 broad.mit.edu 36 10 108913985 108913986 + Missense_Mutation DNP GC GC AA novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 108913985 108913986 SORCS1 10 GC GC AA 46 OR52E2 119678 broad.mit.edu 36 11 5037170 5037170 + Nonsense_Mutation SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 5037170 5037170 OR52E2 11 C C T 30 OR8K5 219453 broad.mit.edu 36 11 55683584 55683584 + Silent SNP G G T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 55683584 55683584 OR8K5 11 G G T 47 OR9Q2 219957 broad.mit.edu 36 11 57714696 57714696 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 57714696 57714696 OR9Q2 11 G G A 40 PYGM 5837 broad.mit.edu 36 11 64270790 64270790 + Missense_Mutation SNP G G C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64270790 64270790 PYGM 11 G G C 39 ANKRD13D 338692 broad.mit.edu 36 11 66825128 66825128 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 66825128 66825128 ANKRD13D 11 G G A 38 ANKK1 255239 broad.mit.edu 36 11 112775938 112775938 + Silent SNP A A T rs10615370 Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 112775938 112775938 ANKK1 11 A A T 15 NLRX1 79671 broad.mit.edu 36 11 118558087 118558087 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 118558087 118558087 NLRX1 11 C C T 19 CSDA 8531 broad.mit.edu 36 12 10757084 10757084 + Missense_Mutation SNP G G T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10757084 10757084 CSDA 12 G G T 43 KIF5A 3798 broad.mit.edu 36 12 56249080 56249080 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56249080 56249080 KIF5A 12 C C T 28 TCP11L2 255394 broad.mit.edu 36 12 105239423 105239423 + Silent SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 105239423 105239423 TCP11L2 12 C C T 25 TBX5 6910 broad.mit.edu 36 12 113277927 113277927 + Silent SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 113277927 113277927 TBX5 12 C C T 21 KNTC1 9735 broad.mit.edu 36 12 121607955 121607955 + Missense_Mutation SNP G G C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 121607955 121607955 KNTC1 12 G G C 33 DNAH10 196385 broad.mit.edu 36 12 122898462 122898462 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 122898462 122898462 DNAH10 12 C C T 27 UBC 7316 broad.mit.edu 36 12 123963649 123963649 + Missense_Mutation SNP G G C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 123963649 123963649 UBC 12 G G C 35 PARP4 143 broad.mit.edu 36 13 23919310 23919310 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23919310 23919310 PARP4 13 C C T 29 NBEA 26960 broad.mit.edu 36 13 34520725 34520725 + Missense_Mutation SNP A A C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34520725 34520725 NBEA 13 A A C 3 AKAP6 9472 broad.mit.edu 36 14 32361328 32361328 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32361328 32361328 AKAP6 14 C C A 18 GPHB5 122876 broad.mit.edu 36 14 62854276 62854276 + Missense_Mutation SNP A A G novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62854276 62854276 GPHB5 14 A A G 11 SPTB 6710 broad.mit.edu 36 14 64333093 64333093 + Missense_Mutation SNP G G T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64333093 64333093 SPTB 14 G G T 38 MYO5C 55930 broad.mit.edu 36 15 50324876 50324876 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50324876 50324876 MYO5C 15 C C A 24 SCAPER 49855 broad.mit.edu 36 15 74455688 74455688 + Missense_Mutation SNP C C G novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74455688 74455688 SCAPER 15 C C G 26 ADAMTSL3 57188 broad.mit.edu 36 15 82383776 82383776 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 82383776 82383776 ADAMTSL3 15 C C A 26 ROGDI 79641 broad.mit.edu 36 16 4791546 4791546 + Silent SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 4791546 4791546 ROGDI 16 C C T 24 NOMO1 23420 broad.mit.edu 36 16 14888154 14888154 + Silent SNP A A C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 14888154 14888154 NOMO1 16 A A C 5 ANKRD11 29123 broad.mit.edu 36 16 87910856 87910856 + Missense_Mutation SNP G G C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 87910856 87910856 ANKRD11 16 G G C 46 TP53 7157 broad.mit.edu 36 17 7518915 7518915 + Missense_Mutation SNP T T C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7518915 7518915 TP53 17 T T C 49 NF1 4763 broad.mit.edu 36 17 26688724 26688724 + Nonsense_Mutation SNP G G T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 26688724 26688724 NF1 17 G G T 41 RASL10B 91608 broad.mit.edu 36 17 31092347 31092348 + Missense_Mutation DNP CA CA GC novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 31092347 31092348 RASL10B 17 CA CA GC 29 THEG 51298 broad.mit.edu 36 19 313215 313215 + Silent SNP G G A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 313215 313215 THEG 19 G G A 47 DENND1C 79958 broad.mit.edu 36 19 6418619 6418619 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6418619 6418619 DENND1C 19 G G A 44 EMR3 84658 broad.mit.edu 36 19 14615967 14615967 + Missense_Mutation SNP A A T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 14615967 14615967 EMR3 19 A A T 5 LRFN1 57622 broad.mit.edu 36 19 44496512 44496512 + Silent SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 44496512 44496512 LRFN1 19 C C T 31 LYPD4 147719 broad.mit.edu 36 19 47033123 47033123 + Silent SNP T T G novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 47033123 47033123 LYPD4 19 T T G 55 CD3EAP 10849 broad.mit.edu 36 19 50602266 50602266 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50602266 50602266 CD3EAP 19 G G A 41 GPR4 2828 broad.mit.edu 36 19 50786019 50786019 + Missense_Mutation SNP T T C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50786019 50786019 GPR4 19 T T C 50 DHX34 9704 broad.mit.edu 36 19 52562129 52562129 + Silent SNP A A C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 52562129 52562129 DHX34 19 A A C 6 LILRB3 11025 broad.mit.edu 36 19 59416352 59416352 + Silent SNP G G A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 59416352 59416352 LILRB3 19 G G A 40 LILRB1 10859 broad.mit.edu 36 19 59836413 59836413 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59836413 59836413 LILRB1 19 G G A 45 ISOC2 79763 broad.mit.edu 36 19 60658221 60658221 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 60658221 60658221 ISOC2 19 C C T 31 C2orf18 54978 broad.mit.edu 36 2 26854537 26854537 + Missense_Mutation SNP G G T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26854537 26854537 C2orf18 2 G G T 42 NPAS2 4862 broad.mit.edu 36 2 100931172 100931172 + Missense_Mutation SNP A A G novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100931172 100931172 NPAS2 2 A A G 5 IL1RL2 8808 broad.mit.edu 36 2 102218109 102218109 + Missense_Mutation SNP A A T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102218109 102218109 IL1RL2 2 A A T 3 COL3A1 1281 broad.mit.edu 36 2 189563104 189563104 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 189563104 189563104 COL3A1 2 G G A 41 PLCL1 5334 broad.mit.edu 36 2 198658277 198658277 + Silent SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 198658277 198658277 PLCL1 2 C C T 17 LOC26010 26010 broad.mit.edu 36 2 201050854 201050854 + Missense_Mutation SNP G G C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 201050854 201050854 LOC26010 2 G G C 35 MAP2 4133 broad.mit.edu 36 2 210278593 210278593 + Silent SNP A A G novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 210278593 210278593 MAP2 2 A A G 10 SRXN1 140809 broad.mit.edu 36 20 581635 581635 + Silent SNP G G C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 581635 581635 SRXN1 20 G G C 37 FAM113A 64773 broad.mit.edu 36 20 2767340 2767340 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2767340 2767340 FAM113A 20 C C T 17 CDH22 64405 broad.mit.edu 36 20 44248709 44248709 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44248709 44248709 CDH22 20 C C A 24 CLTCL1 8218 broad.mit.edu 36 22 17576458 17576458 + Missense_Mutation SNP T T A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 17576458 17576458 CLTCL1 22 T T A 62 TYMP 1890 broad.mit.edu 36 22 49313004 49313004 + Silent SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 49313004 49313004 TYMP 22 C C T 25 PLCL2 23228 broad.mit.edu 36 3 17026287 17026287 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 17026287 17026287 PLCL2 3 C C A 20 ENTPD3 956 broad.mit.edu 36 3 40432431 40432431 + Nonsense_Mutation SNP G G T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 40432431 40432431 ENTPD3 3 G G T 35 RNF123 63891 broad.mit.edu 36 3 49726570 49726570 + Missense_Mutation SNP T T A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49726570 49726570 RNF123 3 T T A 55 C3orf15 89876 broad.mit.edu 36 3 120948797 120948797 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 120948797 120948797 C3orf15 3 G G A 34 EPHB1 2047 broad.mit.edu 36 3 136403158 136403158 + Silent SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 136403158 136403158 EPHB1 3 C C T 23 PLOD2 5352 broad.mit.edu 36 3 147324655 147324655 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 147324655 147324655 PLOD2 3 C C T 31 LRRC66 339977 broad.mit.edu 36 4 52555527 52555527 + Silent SNP G G C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 52555527 52555527 LRRC66 4 G G C 47 ODAM 54959 broad.mit.edu 36 4 71097019 71097019 + Missense_Mutation SNP T T A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71097019 71097019 ODAM 4 T T A 58 FRAS1 80144 broad.mit.edu 36 4 79637082 79637083 + Missense_Mutation DNP GG GG TT novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 79637082 79637083 FRAS1 4 GG GG TT 47 HNRPDL 9987 broad.mit.edu 36 4 83568293 83568293 + Missense_Mutation SNP A A C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 83568293 83568293 HNRPDL 4 A A C 1 TACR3 6870 broad.mit.edu 36 4 104730348 104730348 + Silent SNP A A T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 104730348 104730348 TACR3 4 A A T 7 ANK2 287 broad.mit.edu 36 4 114513912 114513912 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 114513912 114513912 ANK2 4 G G A 39 SCLT1 132320 broad.mit.edu 36 4 130089114 130089114 + Missense_Mutation SNP T T A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 130089114 130089114 SCLT1 4 T T A 62 SNX25 83891 broad.mit.edu 36 4 186500204 186500204 + Missense_Mutation SNP G G C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 186500204 186500204 SNX25 4 G G C 33 CAST 831 broad.mit.edu 36 5 96105106 96105106 + Missense_Mutation SNP C C G novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 96105106 96105106 CAST 5 C C G 31 RAD50 10111 broad.mit.edu 36 5 132004387 132004387 + Missense_Mutation SNP C C G novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 132004387 132004387 RAD50 5 C C G 28 HIST1H3I 8354 broad.mit.edu 36 6 27947775 27947775 + Missense_Mutation SNP A A G novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27947775 27947775 HIST1H3I 6 A A G 15 OR14J1 442191 broad.mit.edu 36 6 29382964 29382964 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29382964 29382964 OR14J1 6 C C A 18 FTSJD2 23070 broad.mit.edu 36 6 37526034 37526034 + Silent SNP T T C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 37526034 37526034 FTSJD2 6 T T C 62 MICAL1 64780 broad.mit.edu 36 6 109875113 109875113 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 109875113 109875113 MICAL1 6 C C T 30 SYNE1 23345 broad.mit.edu 36 6 152596620 152596620 + Missense_Mutation SNP T T C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 152596620 152596620 SYNE1 6 T T C 62 SYNE1 23345 broad.mit.edu 36 6 152693389 152693389 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 152693389 152693389 SYNE1 6 C C A 24 QKI 9444 broad.mit.edu 36 6 163904617 163904617 + Silent SNP A A T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 163904617 163904617 QKI 6 A A T 5 CSMD3 114788 broad.mit.edu 36 8 113395965 113395965 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113395965 113395965 CSMD3 8 C C T 30 TRPS1 7227 broad.mit.edu 36 8 116499853 116499853 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 116499853 116499853 TRPS1 8 G G A 38 PLEC 5339 broad.mit.edu 36 8 145067627 145067627 + Missense_Mutation SNP G G C novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 145067627 145067627 PLEC 8 G G C 47 PRKACG 5568 broad.mit.edu 36 9 70818072 70818072 + Missense_Mutation SNP A A G novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70818072 70818072 PRKACG 9 A A G 11 MAGEB2 4113 broad.mit.edu 36 X 30146685 30146685 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2363-01 TCGA-59-2363-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30146685 30146685 MAGEB2 23 C C T 23