Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context HES2 54626 broad.mit.edu 36 1 6401937 6401937 + Silent SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 6401937 6401937 HES2 1 C C T 25 PDPN 10630 broad.mit.edu 36 1 13809592 13809592 + Missense_Mutation SNP T T C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13809592 13809592 PDPN 1 T T C 54 CSMD2 114784 broad.mit.edu 36 1 33937113 33937113 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 33937113 33937113 CSMD2 1 C C A 17 ZNF643 65243 broad.mit.edu 36 1 40695662 40695662 + Missense_Mutation SNP C C G novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40695662 40695662 ZNF643 1 C C G 28 C1orf168 199920 broad.mit.edu 36 1 56978974 56978974 + Missense_Mutation SNP A A G novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56978974 56978974 C1orf168 1 A A G 10 GIPC2 54810 broad.mit.edu 36 1 78319011 78319011 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 78319011 78319011 GIPC2 1 G G A 41 GTF2B 2959 broad.mit.edu 36 1 89098279 89098279 + Nonsense_Mutation SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 89098279 89098279 GTF2B 1 G G A 37 LRRC8B 23507 broad.mit.edu 36 1 89822190 89822190 + Missense_Mutation SNP C C G novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 89822190 89822190 LRRC8B 1 C C G 24 LRRC8D 55144 broad.mit.edu 36 1 90172512 90172512 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 90172512 90172512 LRRC8D 1 C C A 27 TMED5 50999 broad.mit.edu 36 1 93418292 93418292 + Silent SNP G G C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 93418292 93418292 TMED5 1 G G C 37 KIAA1324 57535 broad.mit.edu 36 1 109508684 109508684 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 109508684 109508684 KIAA1324 1 C C A 18 MOV10 4343 broad.mit.edu 36 1 113038243 113038243 + Missense_Mutation SNP G G T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113038243 113038243 MOV10 1 G G T 35 ADAR 103 broad.mit.edu 36 1 152840993 152840993 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 152840993 152840993 ADAR 1 G G A 34 THBS3 7059 broad.mit.edu 36 1 153439255 153439255 + Missense_Mutation SNP T T C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 153439255 153439255 THBS3 1 T T C 60 ASPM 259266 broad.mit.edu 36 1 195381893 195381893 + Splice_Site_SNP SNP C C A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 195381893 195381893 ASPM 1 C C A 18 CDC42BPA 8476 broad.mit.edu 36 1 225289083 225289083 + Silent SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 225289083 225289083 CDC42BPA 1 C C T 32 VIM 7431 broad.mit.edu 36 10 17317384 17317384 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 17317384 17317384 VIM 10 G G A 37 GRID1 2894 broad.mit.edu 36 10 87665922 87665922 + Splice_Site_SNP SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 87665922 87665922 GRID1 10 C C T 18 VWA2 340706 broad.mit.edu 36 10 116038746 116038746 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 116038746 116038746 VWA2 10 C C A 26 MUC2 4583 broad.mit.edu 36 11 1072712 1072712 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1072712 1072712 MUC2 11 G G A 46 TRIM5 85363 broad.mit.edu 36 11 5657862 5657862 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5657862 5657862 TRIM5 11 G G A 46 NELL1 4745 broad.mit.edu 36 11 20925491 20925491 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 20925491 20925491 NELL1 11 C C A 30 OR5M11 219487 broad.mit.edu 36 11 56066963 56066963 + Missense_Mutation SNP G G T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56066963 56066963 OR5M11 11 G G T 46 AHNAK 79026 broad.mit.edu 36 11 62044940 62044940 + Missense_Mutation SNP T T G novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62044940 62044940 AHNAK 11 T T G 50 GPR152 390212 broad.mit.edu 36 11 66975882 66975882 + Missense_Mutation SNP A A T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 66975882 66975882 GPR152 11 A A T 8 UBE4A 9354 broad.mit.edu 36 11 117758581 117758581 + Missense_Mutation SNP C C G novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 117758581 117758581 UBE4A 11 C C G 29 OR10S1 219873 broad.mit.edu 36 11 123353334 123353334 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 123353334 123353334 OR10S1 11 G G A 43 PRICKLE1 144165 broad.mit.edu 36 12 41140237 41140237 + Missense_Mutation SNP T T C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41140237 41140237 PRICKLE1 12 T T C 49 CALCOCO1 57658 broad.mit.edu 36 12 52405214 52405214 + Missense_Mutation SNP T T C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52405214 52405214 CALCOCO1 12 T T C 60 MDM1 56890 broad.mit.edu 36 12 66982832 66982832 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 66982832 66982832 MDM1 12 C C A 32 TPH2 121278 broad.mit.edu 36 12 70621660 70621660 + Silent SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 70621660 70621660 TPH2 12 C C T 19 RPH3A 22895 broad.mit.edu 36 12 111787659 111787659 + Silent SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 111787659 111787659 RPH3A 12 C C T 18 GCN1L1 10985 broad.mit.edu 36 12 119070500 119070500 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 119070500 119070500 GCN1L1 12 C C A 17 DZIP1 22873 broad.mit.edu 36 13 95040593 95040593 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 95040593 95040593 DZIP1 13 C C T 31 MIPOL1 145282 broad.mit.edu 36 14 36847325 36847325 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36847325 36847325 MIPOL1 14 C C A 17 SLC35F4 341880 broad.mit.edu 36 14 57117782 57117782 + Missense_Mutation SNP A A T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 57117782 57117782 SLC35F4 14 A A T 7 RYR3 6263 broad.mit.edu 36 15 31819358 31819358 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31819358 31819358 RYR3 15 C C T 26 EXD1 161829 broad.mit.edu 36 15 39275431 39275432 + Missense_Mutation DNP TT TT AA novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 39275431 39275432 EXD1 15 TT TT AA 52 JMJD7-PLA2G4B 100137047 broad.mit.edu 36 15 39916423 39916423 + Missense_Mutation SNP C C G novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39916423 39916423 JMJD7-PLA2G4B 15 C C G 25 ZNF668 79759 broad.mit.edu 36 16 30981063 30981063 + Nonsense_Mutation SNP G G T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 30981063 30981063 ZNF668 16 G G T 38 NXN 64359 broad.mit.edu 36 17 650996 650996 + Silent SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 650996 650996 NXN 17 G G A 37 TP53 7157 broad.mit.edu 36 17 7517846 7517846 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7517846 7517846 TP53 17 G G A 38 MYH13 8735 broad.mit.edu 36 17 10190737 10190737 + Silent SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 10190737 10190737 MYH13 17 C C T 26 TRIM16 10626 broad.mit.edu 36 17 15476640 15476640 + Nonsense_Mutation SNP G G T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 15476640 15476640 TRIM16 17 G G T 37 KRT13 3860 broad.mit.edu 36 17 36912364 36912364 + Silent SNP C C G novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 36912364 36912364 KRT13 17 C C G 26 ATXN7L3 56970 broad.mit.edu 36 17 39627420 39627420 + Missense_Mutation SNP A A C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39627420 39627420 ATXN7L3 17 A A C 8 TBX4 9496 broad.mit.edu 36 17 56889756 56889756 + Missense_Mutation SNP T T C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56889756 56889756 TBX4 17 T T C 50 ABCA8 10351 broad.mit.edu 36 17 64383005 64383005 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64383005 64383005 ABCA8 17 C C T 23 FBN3 84467 broad.mit.edu 36 19 8044141 8044141 + Missense_Mutation SNP G G T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8044141 8044141 FBN3 19 G G T 38 COL5A3 50509 broad.mit.edu 36 19 9967274 9967274 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 9967274 9967274 COL5A3 19 C C T 30 SLC1A6 6511 broad.mit.edu 36 19 14944684 14944684 + Silent SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 14944684 14944684 SLC1A6 19 G G A 38 DMKN 93099 broad.mit.edu 36 19 40684629 40684629 + Missense_Mutation SNP G G T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40684629 40684629 DMKN 19 G G T 42 FBXO27 126433 broad.mit.edu 36 19 44209477 44209477 + Missense_Mutation SNP G G T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44209477 44209477 FBXO27 19 G G T 42 CYP2A13 1553 broad.mit.edu 36 19 46287833 46287833 + Missense_Mutation SNP C C G novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 46287833 46287833 CYP2A13 19 C C G 27 SIGLEC11 114132 broad.mit.edu 36 19 55155811 55155811 + Missense_Mutation SNP G G C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55155811 55155811 SIGLEC11 19 G G C 44 NLRP4 147945 broad.mit.edu 36 19 61062396 61062396 + Missense_Mutation SNP G G T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 61062396 61062396 NLRP4 19 G G T 48 NLRP4 147945 broad.mit.edu 36 19 61065273 61065273 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 61065273 61065273 NLRP4 19 C C T 31 NPAS2 4862 broad.mit.edu 36 2 100947013 100947013 + Silent SNP A A G novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 100947013 100947013 NPAS2 2 A A G 15 CACNB4 785 broad.mit.edu 36 2 152437208 152437208 + Silent SNP A A T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 152437208 152437208 CACNB4 2 A A T 7 TTN 7273 broad.mit.edu 36 2 179320360 179320360 + Silent SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 179320360 179320360 TTN 2 G G A 36 BOLL 66037 broad.mit.edu 36 2 198348711 198348711 + Splice_Site_SNP SNP T T G novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 198348711 198348711 BOLL 2 T T G 53 ZNF280B 140883 broad.mit.edu 36 22 21173712 21173712 + Silent SNP T T C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 21173712 21173712 ZNF280B 22 T T C 51 TRIOBP 11078 broad.mit.edu 36 22 36461253 36461253 + Missense_Mutation SNP C C G novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36461253 36461253 TRIOBP 22 C C G 22 TUBGCP6 85378 broad.mit.edu 36 22 49004795 49004796 + Missense_Mutation DNP CC CC TG novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 49004795 49004796 TUBGCP6 22 CC CC TG 26 CPNE9 151835 broad.mit.edu 36 3 9735228 9735228 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 9735228 9735228 CPNE9 3 C C T 27 HDAC11 79885 broad.mit.edu 36 3 13513271 13513271 + Silent SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 13513271 13513271 HDAC11 3 C C T 22 MST1R 4486 broad.mit.edu 36 3 49907684 49907684 + Missense_Mutation SNP G G C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49907684 49907684 MST1R 3 G G C 33 LRRC33 375387 broad.mit.edu 36 3 197872123 197872123 + Silent SNP G G C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 197872123 197872123 LRRC33 3 G G C 46 PCDH7 5099 broad.mit.edu 36 4 30334217 30334217 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30334217 30334217 PCDH7 4 G G A 43 APBB2 323 broad.mit.edu 36 4 40523994 40523994 + Splice_Site_SNP SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 40523994 40523994 APBB2 4 C C T 32 PHOX2B 8929 broad.mit.edu 36 4 41444218 41444218 + Missense_Mutation SNP C C G novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41444218 41444218 PHOX2B 4 C C G 32 ELF2 1998 broad.mit.edu 36 4 140199644 140199644 + Silent SNP T T C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 140199644 140199644 ELF2 4 T T C 55 ACCN5 51802 broad.mit.edu 36 4 157004085 157004085 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 157004085 157004085 ACCN5 4 C C A 21 CLPTM1L 81037 broad.mit.edu 36 5 1397548 1397548 + Missense_Mutation SNP T T C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1397548 1397548 CLPTM1L 5 T T C 58 NR3C1 2908 broad.mit.edu 36 5 142641666 142641666 + Missense_Mutation SNP A A G novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 142641666 142641666 NR3C1 5 A A G 3 CPLX2 10814 broad.mit.edu 36 5 175238527 175238527 + Missense_Mutation SNP G G C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 175238527 175238527 CPLX2 5 G G C 35 BACH2 60468 broad.mit.edu 36 6 90699106 90699106 + Silent SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 90699106 90699106 BACH2 6 C C T 23 CARD11 84433 broad.mit.edu 36 7 2928911 2928911 + Missense_Mutation SNP A A C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2928911 2928911 CARD11 7 A A C 7 HDAC9 9734 broad.mit.edu 36 7 18635511 18635511 + Silent SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 18635511 18635511 HDAC9 7 C C T 20 NPC1L1 29881 broad.mit.edu 36 7 44542426 44542426 + Missense_Mutation SNP A A G novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44542426 44542426 NPC1L1 7 A A G 9 ADCY1 107 broad.mit.edu 36 7 45716742 45716742 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45716742 45716742 ADCY1 7 G G A 39 PARP12 64761 broad.mit.edu 36 7 139373616 139373616 + Silent SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 139373616 139373616 PARP12 7 G G A 46 OR2A5 393046 broad.mit.edu 36 7 143379018 143379018 + Silent SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 143379018 143379018 OR2A5 7 G G A 47 FRMPD1 22844 broad.mit.edu 36 9 37735741 37735741 + Missense_Mutation SNP G G T rs62640014 Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37735741 37735741 FRMPD1 9 G G T 33 FAM75A7 26165 broad.mit.edu 36 9 65247358 65247358 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 65247358 65247358 FAM75A7 9 C C T 30 OMD 4958 broad.mit.edu 36 9 94219641 94219641 + Missense_Mutation SNP T T C novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 94219641 94219641 OMD 9 T T C 49 HSPA5 3309 broad.mit.edu 36 9 127038734 127038734 + Silent SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 127038734 127038734 HSPA5 9 G G A 43 GPKOW 27238 broad.mit.edu 36 X 48865947 48865947 + Silent SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 48865947 48865947 GPKOW 23 C C T 21 CACNA1F 778 broad.mit.edu 36 X 48970015 48970015 + Splice_Site_SNP SNP C C G novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 48970015 48970015 CACNA1F 23 C C G 18 IQSEC2 23096 broad.mit.edu 36 X 53297034 53297034 + Silent SNP C C T novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 53297034 53297034 IQSEC2 23 C C T 19 AMMECR1 9949 broad.mit.edu 36 X 109447814 109447814 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 109447814 109447814 AMMECR1 23 C C A 24 CAPN6 827 broad.mit.edu 36 X 110378577 110378577 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 110378577 110378577 CAPN6 23 G G A 39 GABRE 2564 broad.mit.edu 36 X 150889328 150889328 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2348-01 TCGA-59-2348-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150889328 150889328 GABRE 23 G G A 38