Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ACSM3	6296	hgsc.bcm.edu	36	16	20688980	20688980	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	20688980	20688980	ACSM3	16	C	C	G	21
ANO4	121601	hgsc.bcm.edu	36	12	100029480	100029480	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	100029480	100029480	ANO4	12	T	T	C	57
APC	324	hgsc.bcm.edu	36	5	112182853	112182853	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	112182853	112182853	APC	5	C	C	G	32
ATL1	51062	hgsc.bcm.edu	36	14	50157077	50157078	+	Frame_Shift_Del	DEL	TG	TG	-	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	TG	TG	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	50157077	50157078	ATL1	14	TG	TG	-	51
C20orf43	51507	hgsc.bcm.edu	36	20	54521818	54521818	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54521818	54521818	C20orf43	20	A	A	G	4
CD163	9332	hgsc.bcm.edu	36	12	7545208	7545208	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7545208	7545208	CD163	12	G	G	C	38
CD63	967	hgsc.bcm.edu	36	12	54406845	54406845	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54406845	54406845	CD63	12	A	A	G	6
CHRAC1	54108	hgsc.bcm.edu	36	8	141590819	141590819	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	141590819	141590819	CHRAC1	8	G	G	A	34
CLCA1	1179	hgsc.bcm.edu	36	1	86729572	86729572	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	86729572	86729572	CLCA1	1	A	A	G	2
CNTFR	1271	hgsc.bcm.edu	36	9	34546274	34546274	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	34546274	34546274	CNTFR	9	G	G	T	45
COL14A1	7373	hgsc.bcm.edu	36	8	121379005	121379005	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	121379005	121379005	COL14A1	8	C	C	A	26
CTPS2	56474	hgsc.bcm.edu	36	X	16545276	16545276	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	16545276	16545276	CTPS2	23	C	C	G	29
CYP1A2	1544	hgsc.bcm.edu	36	15	72829453	72829453	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	72829453	72829453	CYP1A2	15	C	C	A	26
DCLK2	166614	hgsc.bcm.edu	36	4	151372943	151372943	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	151372943	151372943	DCLK2	4	A	A	G	6
DEFB105B	504180	hgsc.bcm.edu	36	8	7332663	7332663	+	Missense_Mutation	SNP	T	T	A	rs62639778	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7332663	7332663	DEFB105B	8	T	T	A	50
DPYSL4	10570	hgsc.bcm.edu	36	10	133863896	133863896	+	Silent	SNP	C	C	T	rs56326856	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	133863896	133863896	DPYSL4	10	C	C	T	19
ECM1	1893	hgsc.bcm.edu	36	1	148750264	148750264	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	148750264	148750264	ECM1	1	G	G	C	34
ECM2	1842	hgsc.bcm.edu	36	9	94316893	94316893	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	94316893	94316893	ECM2	9	G	G	A	39
EEA1	8411	hgsc.bcm.edu	36	12	91697092	91697092	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	91697092	91697092	EEA1	12	A	A	G	16
EGFR	1956	hgsc.bcm.edu	36	7	55240774	55240774	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	55240774	55240774	EGFR	7	G	G	A	38
EME1	146956	hgsc.bcm.edu	36	17	45808532	45808532	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	45808532	45808532	EME1	17	G	G	A	41
FAM129C	199786	hgsc.bcm.edu	36	19	17505411	17505411	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	17505411	17505411	FAM129C	19	G	G	A	43
FAM171B	165215	hgsc.bcm.edu	36	2	187335568	187335568	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	187335568	187335568	FAM171B	2	G	G	A	40
FANCA	2175	hgsc.bcm.edu	36	16	88376984	88376984	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	88376984	88376984	FANCA	16	G	G	C	41
FBXO38	81545	hgsc.bcm.edu	36	5	147787404	147787404	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	147787404	147787404	FBXO38	5	A	A	G	5
FPR1	2357	hgsc.bcm.edu	36	19	56941244	56941244	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	56941244	56941244	FPR1	19	C	C	A	25
GABRA6	2559	hgsc.bcm.edu	36	5	161051681	161051681	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	161051681	161051681	GABRA6	5	C	C	T	18
GABRB1	2560	hgsc.bcm.edu	36	4	47100191	47100191	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47100191	47100191	GABRB1	4	A	A	T	10
GHSR	2693	hgsc.bcm.edu	36	3	173648269	173648269	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	173648269	173648269	GHSR	3	A	A	T	11
GLI1	2735	hgsc.bcm.edu	36	12	56144873	56144873	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	56144873	56144873	GLI1	12	C	C	T	17
GRIA3	2892	hgsc.bcm.edu	36	X	122426617	122426617	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	122426617	122426617	GRIA3	23	T	T	A	59
GRIN2D	2906	hgsc.bcm.edu	36	19	53614307	53614307	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	53614307	53614307	GRIN2D	19	C	C	T	24
GSDMC	56169	hgsc.bcm.edu	36	8	130844119	130844119	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	130844119	130844119	GSDMC	8	G	G	C	38
HECW2	57520	hgsc.bcm.edu	36	2	196793824	196793824	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	196793824	196793824	HECW2	2	C	C	T	20
HLF	3131	hgsc.bcm.edu	36	17	50753035	50753035	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	50753035	50753035	HLF	17	C	C	T	20
HYAL3	8372	hgsc.bcm.edu	36	3	50307888	50307888	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	50307888	50307888	HYAL3	3	C	C	G	25
KLHL9	55958	hgsc.bcm.edu	36	9	21323640	21323640	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	21323640	21323640	KLHL9	9	G	G	A	38
KPNB1	3837	hgsc.bcm.edu	36	17	43089426	43089426	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	43089426	43089426	KPNB1	17	G	G	C	36
KRT6B	3854	hgsc.bcm.edu	36	12	51130513	51130513	+	Silent	SNP	A	A	G	rs28542657	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	51130513	51130513	KRT6B	12	A	A	G	10
LCK	3932	hgsc.bcm.edu	36	1	32512572	32512572	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	32512572	32512572	LCK	1	G	G	T	48
LRRC7	57554	hgsc.bcm.edu	36	1	70314368	70314368	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	70314368	70314368	LRRC7	1	G	G	A	40
LYPD2	137797	hgsc.bcm.edu	36	8	143829479	143829479	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	143829479	143829479	LYPD2	8	C	C	T	23
MED13L	23389	hgsc.bcm.edu	36	12	114891260	114891260	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	114891260	114891260	MED13L	12	G	G	C	41
MFN1	55669	hgsc.bcm.edu	36	3	180564867	180564867	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	180564867	180564867	MFN1	3	G	G	A	45
MORC2	22880	hgsc.bcm.edu	36	22	29660113	29660113	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	29660113	29660113	MORC2	22	C	C	T	32
MYH3	4621	hgsc.bcm.edu	36	17	10476630	10476630	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10476630	10476630	MYH3	17	A	A	C	11
NR1I3	9970	hgsc.bcm.edu	36	1	159469286	159469286	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	159469286	159469286	NR1I3	1	G	G	T	37
PFAS	5198	hgsc.bcm.edu	36	17	8107262	8107262	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	8107262	8107262	PFAS	17	G	G	C	35
PKDREJ	10343	hgsc.bcm.edu	36	22	45032793	45032793	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	45032793	45032793	PKDREJ	22	G	G	A	45
POLE	5426	hgsc.bcm.edu	36	12	131724744	131724744	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	131724744	131724744	POLE	12	G	G	C	44
PREX2	80243	hgsc.bcm.edu	36	8	69171884	69171884	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	69171884	69171884	PREX2	8	A	A	T	6
RIC3	79608	hgsc.bcm.edu	36	11	8147016	8147016	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	8147016	8147016	RIC3	11	G	G	-	38
CLVS2	134829	hgsc.bcm.edu	36	6	123426558	123426558	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	123426558	123426558	CLVS2	6	G	G	C	41
RNASE11	122651	hgsc.bcm.edu	36	14	20122180	20122180	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	20122180	20122180	RNASE11	14	G	G	A	46
PPP6R3	55291	hgsc.bcm.edu	36	11	68061779	68061779	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	68061779	68061779	PPP6R3	11	T	T	G	55
SHROOM4	57477	hgsc.bcm.edu	36	X	50395248	50395248	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	50395248	50395248	SHROOM4	23	C	C	T	28
SLC2A9	56606	hgsc.bcm.edu	36	4	9531239	9531239	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	9531239	9531239	SLC2A9	4	C	C	G	21
SLC7A2	6542	hgsc.bcm.edu	36	8	17445394	17445394	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	17445394	17445394	SLC7A2	8	C	A	A	28
SMC2	10592	hgsc.bcm.edu	36	9	105927201	105927201	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	105927201	105927201	SMC2	9	A	A	C	2
SNCAIP	9627	hgsc.bcm.edu	36	5	121814172	121814172	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	121814172	121814172	SNCAIP	5	A	A	G	7
SPINT2	10653	hgsc.bcm.edu	36	19	43466240	43466240	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	43466240	43466240	SPINT2	19	C	C	T	21
STAB2	55576	hgsc.bcm.edu	36	12	102660312	102660312	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	102660312	102660312	STAB2	12	G	G	C	34
SYT6	148281	hgsc.bcm.edu	36	1	114481862	114481862	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	114481862	114481862	SYT6	1	G	G	A	43
TLR8	51311	hgsc.bcm.edu	36	X	12848591	12848591	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	12848591	12848591	TLR8	23	T	T	A	56
TP53	7157	hgsc.bcm.edu	36	17	7518299	7518299	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7518299	7518299	TP53	17	T	T	C	57
TTK	7272	hgsc.bcm.edu	36	6	80804426	80804426	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	80804426	80804426	TTK	6	A	A	C	6
UQCR11	10975	hgsc.bcm.edu	36	19	1550447	1550447	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	1550447	1550447	UQCR11	19	C	C	G	30
USP5	8078	hgsc.bcm.edu	36	12	6841035	6841035	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6841035	6841035	USP5	12	G	G	T	34
VWF	7450	hgsc.bcm.edu	36	12	5947592	5947592	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5947592	5947592	VWF	12	G	G	C	38
XRCC1	7515	hgsc.bcm.edu	36	19	48742969	48742969	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	48742969	48742969	XRCC1	19	C	C	T	18
ZNF804B	219578	hgsc.bcm.edu	36	7	88801682	88801682	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-57-1582-01	TCGA-57-1582-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	88801682	88801682	ZNF804B	7	C	C	A	28