Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ACO1	48	hgsc.bcm.edu	36	9	32397428	32397428	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	32397428	32397428	ACO1	9	G	G	A	40
ALAS1	211	hgsc.bcm.edu	36	3	52220371	52220371	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	52220371	52220371	ALAS1	3	G	G	A	38
AOC2	314	hgsc.bcm.edu	36	17	38250931	38250931	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	38250931	38250931	AOC2	17	T	T	A	55
ARID2	196528	hgsc.bcm.edu	36	12	44530530	44530530	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	44530530	44530530	ARID2	12	G	G	C	42
ATP1A2	477	hgsc.bcm.edu	36	1	158376384	158376384	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	158376384	158376384	ATP1A2	1	G	G	C	39
ATP6AP1	537	hgsc.bcm.edu	36	X	153315926	153315926	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	153315926	153315926	ATP6AP1	23	T	T	G	54
BCR	613	hgsc.bcm.edu	36	22	21964794	21964794	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	21964794	21964794	BCR	22	A	A	T	14
BTAF1	9044	hgsc.bcm.edu	36	10	93709811	93709811	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	93709811	93709811	BTAF1	10	C	C	T	28
BTBD12	84464	hgsc.bcm.edu	36	16	3596513	3596513	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	3596513	3596513	BTBD12	16	G	G	C	41
C6orf167	253714	hgsc.bcm.edu	36	6	97836995	97836995	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	97836995	97836995	C6orf167	6	G	G	A	35
COL11A2	1302	hgsc.bcm.edu	36	6	33262569	33262569	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33262569	33262569	COL11A2	6	T	T	A	50
CPS1	1373	hgsc.bcm.edu	36	2	211229544	211229544	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	211229544	211229544	CPS1	2	G	G	A	39
CTBP2	1488	hgsc.bcm.edu	36	10	126668113	126668113	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	126668113	126668113	CTBP2	10	T	T	-	60
CTNND2	1501	hgsc.bcm.edu	36	5	11135865	11135865	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11135865	11135865	CTNND2	5	C	C	T	27
CYP2C18	1562	hgsc.bcm.edu	36	10	96485151	96485151	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	96485151	96485151	CYP2C18	10	G	G	T	40
DARS	1615	hgsc.bcm.edu	36	2	136417426	136417426	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	136417426	136417426	DARS	2	C	C	T	17
DDX54	79039	hgsc.bcm.edu	36	12	112084116	112084116	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	112084116	112084116	DDX54	12	G	G	T	38
DOPEY1	23033	hgsc.bcm.edu	36	6	83879848	83879848	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	83879848	83879848	DOPEY1	6	C	C	A	21
ERBB2	2064	hgsc.bcm.edu	36	17	35135141	35135141	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	35135141	35135141	ERBB2	17	C	C	G	30
F2R	2149	hgsc.bcm.edu	36	5	76064569	76064569	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	76064569	76064569	F2R	5	C	C	T	29
F2R	2149	hgsc.bcm.edu	36	5	76064685	76064685	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	76064685	76064685	F2R	5	C	C	T	29
F2R	2149	hgsc.bcm.edu	36	5	76064933	76064933	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	76064933	76064933	F2R	5	C	C	T	32
FAM171B	165215	hgsc.bcm.edu	36	2	187334884	187334884	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	187334884	187334884	FAM171B	2	C	C	A	27
FGFR2	2263	hgsc.bcm.edu	36	10	123266854	123266854	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	123266854	123266854	FGFR2	10	G	G	C	35
GALNT3	2591	hgsc.bcm.edu	36	2	166334963	166334963	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	166334963	166334963	GALNT3	2	C	C	A	30
GTPBP1	9567	hgsc.bcm.edu	36	22	37442787	37442787	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	37442787	37442787	GTPBP1	22	G	G	C	48
HSPG2	3339	hgsc.bcm.edu	36	1	22041909	22041909	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	22041909	22041909	HSPG2	1	G	G	C	46
IGFBP6	3489	hgsc.bcm.edu	36	12	51781191	51781191	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	51781191	51781191	IGFBP6	12	G	G	T	35
IMPG2	50939	hgsc.bcm.edu	36	3	102521134	102521134	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102521134	102521134	IMPG2	3	C	C	G	20
ITIH4	3700	hgsc.bcm.edu	36	3	52827536	52827536	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	52827536	52827536	ITIH4	3	T	T	C	51
KDM3B	51780	hgsc.bcm.edu	36	5	137789008	137789008	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	137789008	137789008	KDM3B	5	G	G	C	44
KRT85	3891	hgsc.bcm.edu	36	12	51047407	51047408	+	Frame_Shift_Del	DEL	TT	TT	-	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	TT	TT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	51047407	51047408	KRT85	12	TT	TT	-	60
LRRC1	55227	hgsc.bcm.edu	36	6	53768081	53768081	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	53768081	53768081	LRRC1	6	C	C	A	31
MYOZ1	58529	hgsc.bcm.edu	36	10	75064429	75064429	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	75064429	75064429	MYOZ1	10	G	G	C	48
NCF4	4689	hgsc.bcm.edu	36	22	35593412	35593412	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35593412	35593412	NCF4	22	G	G	A	38
NDC80	10403	hgsc.bcm.edu	36	18	2606527	2606527	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	2606527	2606527	NDC80	18	A	A	-	12
OR6A2	8590	hgsc.bcm.edu	36	11	6773503	6773503	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6773503	6773503	OR6A2	11	T	T	C	62
OR8K5	219453	hgsc.bcm.edu	36	11	55683671	55683671	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	55683671	55683671	OR8K5	11	G	G	T	46
OSBPL11	114885	hgsc.bcm.edu	36	3	126753982	126753982	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	126753982	126753982	OSBPL11	3	T	T	C	50
PAX3	5077	hgsc.bcm.edu	36	2	222793215	222793215	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	222793215	222793215	PAX3	2	T	T	A	57
PAX6	5080	hgsc.bcm.edu	36	11	31778935	31778935	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31778935	31778935	PAX6	11	G	G	C	46
PRICKLE1	144165	hgsc.bcm.edu	36	12	41144643	41144643	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	41144643	41144643	PRICKLE1	12	C	C	G	28
RAB27A	5873	hgsc.bcm.edu	36	15	53314374	53314374	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53314374	53314374	RAB27A	15	G	G	T	36
RASGRF2	5924	hgsc.bcm.edu	36	5	80445321	80445321	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	80445321	80445321	RASGRF2	5	C	C	G	30
RDH12	145226	hgsc.bcm.edu	36	14	67270307	67270307	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	67270307	67270307	RDH12	14	C	C	T	23
RPTOR	57521	hgsc.bcm.edu	36	17	76319034	76319034	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	76319034	76319034	RPTOR	17	G	G	A	46
SCN11A	11280	hgsc.bcm.edu	36	3	38896586	38896586	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	38896586	38896586	SCN11A	3	G	G	C	47
SLC35F5	80255	hgsc.bcm.edu	36	2	114216747	114216747	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	114216747	114216747	SLC35F5	2	A	A	-	5
SLC6A20	54716	hgsc.bcm.edu	36	3	45776362	45776362	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	45776362	45776362	SLC6A20	3	G	G	A	40
SLC7A3	84889	hgsc.bcm.edu	36	X	70062449	70062449	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	70062449	70062449	SLC7A3	23	C	C	T	27
SORCS3	22986	hgsc.bcm.edu	36	10	106960914	106960914	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	106960914	106960914	SORCS3	10	G	G	A	34
SRCAP	10847	hgsc.bcm.edu	36	16	30639697	30639697	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	30639697	30639697	SRCAP	16	G	G	C	47
STAT1	6772	hgsc.bcm.edu	36	2	191552805	191552805	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	191552805	191552805	STAT1	2	C	C	G	26
TBXAS1	6916	hgsc.bcm.edu	36	7	139308389	139308389	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	139308389	139308389	TBXAS1	7	C	C	T	28
TM2D3	80213	hgsc.bcm.edu	36	15	100000284	100000284	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	100000284	100000284	TM2D3	15	A	A	T	7
TM4SF5	9032	hgsc.bcm.edu	36	17	4632568	4632568	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	4632568	4632568	TM4SF5	17	G	G	A	39
TOP1MT	116447	hgsc.bcm.edu	36	8	144474760	144474769	+	Frame_Shift_Del	DEL	GCACTCTGTT	GCACTCTGTT	-	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	GCACTCTGTT	GCACTCTGTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	144474760	144474769	TOP1MT	8	GCACTCTGTT	GCACTCTGTT	-	42
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7517845	7517845	TP53	17	C	C	T	19
USH2A	7399	hgsc.bcm.edu	36	1	214030227	214030227	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	214030227	214030227	USH2A	1	C	C	T	30
USP28	57646	hgsc.bcm.edu	36	11	113206856	113206856	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	113206856	113206856	USP28	11	C	C	A	29
VAV1	7409	hgsc.bcm.edu	36	19	6779900	6779900	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	6779900	6779900	VAV1	19	C	C	G	21
XRN1	54464	hgsc.bcm.edu	36	3	143514209	143514209	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1578-01	TCGA-36-1578-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	143514209	143514209	XRN1	3	T	T	C	51