Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ACE2	59272	hgsc.bcm.edu	36	X	15495857	15495857	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	15495857	15495857	ACE2	23	T	T	A	58
ALDH1L1	10840	hgsc.bcm.edu	36	3	127354975	127354975	+	Splice_Site_SNP	SNP	A	A	T	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	127354975	127354975	ALDH1L1	3	A	A	T	14
AMOT	154796	hgsc.bcm.edu	36	X	111908519	111908519	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	111908519	111908519	AMOT	23	C	C	G	30
AOX1	316	hgsc.bcm.edu	36	2	201215769	201215769	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	201215769	201215769	AOX1	2	G	G	T	35
APBB3	10307	hgsc.bcm.edu	36	5	139921934	139921934	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	139921934	139921934	APBB3	5	G	G	A	48
BST2	684	hgsc.bcm.edu	36	19	17377374	17377374	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	17377374	17377374	BST2	19	G	G	A	36
CCDC84	338657	hgsc.bcm.edu	36	11	118391303	118391303	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	118391303	118391303	CCDC84	11	A	A	T	7
CSMD3	114788	hgsc.bcm.edu	36	8	113335707	113335707	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	113335707	113335707	CSMD3	8	T	T	G	60
CYP2A7	1549	hgsc.bcm.edu	36	19	46078260	46078260	+	Missense_Mutation	SNP	A	A	C	rs56081734	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	46078260	46078260	CYP2A7	19	A	A	C	10
DUOX1	53905	hgsc.bcm.edu	36	15	43221589	43221589	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	43221589	43221589	DUOX1	15	T	T	C	60
FAM83B	222584	hgsc.bcm.edu	36	6	54843423	54843423	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	54843423	54843423	FAM83B	6	G	G	A	41
FBLN7	129804	hgsc.bcm.edu	36	2	112661454	112661454	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	112661454	112661454	FBLN7	2	C	C	T	19
GP2	2813	hgsc.bcm.edu	36	16	20243031	20243031	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	20243031	20243031	GP2	16	C	C	G	25
HSPG2	3339	hgsc.bcm.edu	36	1	22086561	22086561	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	22086561	22086561	HSPG2	1	G	G	C	47
IRAK2	3656	hgsc.bcm.edu	36	3	10258843	10258843	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	10258843	10258843	IRAK2	3	G	G	A	41
MYH1	4619	hgsc.bcm.edu	36	17	10339305	10339305	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10339305	10339305	MYH1	17	G	G	T	47
PGAP1	80055	hgsc.bcm.edu	36	2	197417024	197417025	+	Frame_Shift_Ins	INS	-	-	TA	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	197417024	197417025	PGAP1	2	-	-	TA	62
PKD2L1	9033	hgsc.bcm.edu	36	10	102046802	102046802	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	102046802	102046802	PKD2L1	10	C	C	T	32
PNPLA5	150379	hgsc.bcm.edu	36	22	42617026	42617027	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	42617026	42617027	PNPLA5	22	-	-	G	31
PSD3	23362	hgsc.bcm.edu	36	8	18458108	18458108	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	18458108	18458108	PSD3	8	T	T	A	56
PTPDC1	138639	hgsc.bcm.edu	36	9	95903839	95903839	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	95903839	95903839	PTPDC1	9	T	T	A	64
PTPRR	5801	hgsc.bcm.edu	36	12	69341132	69341132	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	69341132	69341132	PTPRR	12	T	T	C	59
RANBP3L	202151	hgsc.bcm.edu	36	5	36337238	36337238	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	36337238	36337238	RANBP3L	5	G	G	A	35
RANBP6	26953	hgsc.bcm.edu	36	9	6003663	6003663	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6003663	6003663	RANBP6	9	C	C	G	25
RNF10	9921	hgsc.bcm.edu	36	12	119489034	119489034	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	119489034	119489034	RNF10	12	G	G	A	37
RP1	6101	hgsc.bcm.edu	36	8	55703740	55703740	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	55703740	55703740	RP1	8	G	G	A	46
SAMD9	54809	hgsc.bcm.edu	36	7	92571191	92571191	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	92571191	92571191	SAMD9	7	T	T	G	63
SLC27A2	11001	hgsc.bcm.edu	36	15	48277034	48277034	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48277034	48277034	SLC27A2	15	A	A	G	12
SMPDL3B	27293	hgsc.bcm.edu	36	1	28144398	28144398	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	28144398	28144398	SMPDL3B	1	G	G	A	44
STK31	56164	hgsc.bcm.edu	36	7	23787649	23787649	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	23787649	23787649	STK31	7	T	T	C	51
TP53	7157	hgsc.bcm.edu	36	17	7518263	7518264	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	7518263	7518264	TP53	17	-	-	G	23
ZNF41	7592	hgsc.bcm.edu	36	X	47193167	47193167	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1570-01	TCGA-36-1570-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47193167	47193167	ZNF41	23	C	C	T	17