Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context PDIK1L 149420 broad.mit.edu 36 1 26321116 26321116 + Missense_Mutation SNP C C G novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26321116 26321116 PDIK1L 1 C C G 23 LRRIQ3 127255 broad.mit.edu 36 1 74279941 74279941 + Missense_Mutation SNP C C G novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74279941 74279941 LRRIQ3 1 C C G 20 PDE4DIP 9659 broad.mit.edu 36 1 143663557 143663557 + Splice_Site_SNP SNP C C T novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 143663557 143663557 PDE4DIP 1 C C T 20 SPTA1 6708 broad.mit.edu 36 1 156879836 156879836 + Missense_Mutation SNP C C A novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 156879836 156879836 SPTA1 1 C C A 24 B3GALT2 8707 broad.mit.edu 36 1 191416457 191416457 + Missense_Mutation SNP C C T novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 191416457 191416457 B3GALT2 1 C C T 25 PRELP 5549 broad.mit.edu 36 1 201719889 201719889 + Silent SNP C C T novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 201719889 201719889 PRELP 1 C C T 29 PNLIP 5406 broad.mit.edu 36 10 118305559 118305559 + Missense_Mutation SNP G G C novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 118305559 118305559 PNLIP 10 G G C 34 PPAPDC1A 196051 broad.mit.edu 36 10 122324720 122324720 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 122324720 122324720 PPAPDC1A 10 G G A 39 CYP2E1 1571 broad.mit.edu 36 10 135192003 135192003 + Missense_Mutation SNP C C G novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 135192003 135192003 CYP2E1 10 C C G 19 NUP160 23279 broad.mit.edu 36 11 47770961 47770961 + Missense_Mutation SNP T T C novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47770961 47770961 NUP160 11 T T C 49 OR4C13 283092 broad.mit.edu 36 11 49930659 49930659 + Missense_Mutation SNP A A G novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49930659 49930659 OR4C13 11 A A G 8 GIF 2694 broad.mit.edu 36 11 59369478 59369478 + Silent SNP G G A novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 59369478 59369478 GIF 11 G G A 35 E2F7 144455 broad.mit.edu 36 12 75947794 75947794 + Missense_Mutation SNP T T A novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 75947794 75947794 E2F7 12 T T A 64 MYL2 4633 broad.mit.edu 36 12 109837929 109837929 + Missense_Mutation SNP C C A novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 109837929 109837929 MYL2 12 C C A 31 DGKH 160851 broad.mit.edu 36 13 41681575 41681575 + Missense_Mutation SNP A A G novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41681575 41681575 DGKH 13 A A G 7 ADAMTSL3 57188 broad.mit.edu 36 15 82485191 82485191 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 82485191 82485191 ADAMTSL3 15 G G A 39 CDK12 51755 broad.mit.edu 36 17 34902577 34902577 + Nonsense_Mutation SNP G G A novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 34902577 34902577 CDK12 17 G G A 47 RAD23A 5886 broad.mit.edu 36 19 12924845 12924845 + Missense_Mutation SNP G G C novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12924845 12924845 RAD23A 19 G G C 33 ZNF583 147949 broad.mit.edu 36 19 61626618 61626618 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 61626618 61626618 ZNF583 19 G G A 33 TRIB3 57761 broad.mit.edu 36 20 319976 319976 + Missense_Mutation SNP C C G novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 319976 319976 TRIB3 20 C C G 27 CRLS1 54675 broad.mit.edu 36 20 5960658 5960658 + Missense_Mutation SNP C C G novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5960658 5960658 CRLS1 20 C C G 27 ZNF445 353274 broad.mit.edu 36 3 44471659 44471659 + Missense_Mutation SNP C C G novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44471659 44471659 ZNF445 3 C C G 25 COL6A6 131873 broad.mit.edu 36 3 131764946 131764946 + Missense_Mutation SNP G G C novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 131764946 131764946 COL6A6 3 G G C 44 MME 4311 broad.mit.edu 36 3 156347676 156347676 + Missense_Mutation SNP A A G novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 156347676 156347676 MME 3 A A G 4 C3orf59 151963 broad.mit.edu 36 3 193999851 193999851 + Missense_Mutation SNP C C G novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 193999851 193999851 C3orf59 3 C C G 25 PPA2 27068 broad.mit.edu 36 4 106594233 106594233 + Missense_Mutation SNP T T C novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 106594233 106594233 PPA2 4 T T C 49 ADCY2 108 broad.mit.edu 36 5 7467689 7467689 + Missense_Mutation SNP G G T novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7467689 7467689 ADCY2 5 G G T 36 PCDHB16 57717 broad.mit.edu 36 5 140544180 140544180 + Missense_Mutation SNP A A G novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140544180 140544180 PCDHB16 5 A A G 4 ZFP57 346171 broad.mit.edu 36 6 29749153 29749153 + Missense_Mutation SNP C C G novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29749153 29749153 ZFP57 6 C C G 32 LPA 4018 broad.mit.edu 36 6 160935006 160935006 + Silent SNP C C T novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 160935006 160935006 LPA 6 C C T 32 WIPI2 26100 broad.mit.edu 36 7 5224105 5224105 + Silent SNP C C T novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 5224105 5224105 WIPI2 7 C C T 19 ABCB8 11194 broad.mit.edu 36 7 150372194 150372194 + Missense_Mutation SNP C C A novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150372194 150372194 ABCB8 7 C C A 23 MLL3 58508 broad.mit.edu 36 7 151510449 151510449 + Missense_Mutation SNP A A C novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 151510449 151510449 MLL3 7 A A C 5 IL11RA 3590 broad.mit.edu 36 9 34647128 34647128 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34647128 34647128 IL11RA 9 G G A 38 VGLL1 51442 broad.mit.edu 36 X 135458788 135458788 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 135458788 135458788 VGLL1 23 G G A 47 MTMR1 8776 broad.mit.edu 36 X 149656477 149656477 + Missense_Mutation SNP T T A novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 149656477 149656477 MTMR1 23 T T A 50 TP53 7157 broad.mit.edu 36 17 7520087 7520121 + Frame_Shift_Del DEL AACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGG - AACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGG novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 7520087 7520121 TP53 17 AACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGG - AACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGG 1 ALMS1 7840 broad.mit.edu 36 2 73466540 73466545 + In_Frame_Del DEL GGAGGA - GGAGGA novel Unknown TCGA-31-1953-01 TCGA-31-1953-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 73466540 73466545 ALMS1 2 GGAGGA - GGAGGA 47