Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context HSPG2 3339 broad.mit.edu 36 1 22041354 22041354 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 22041354 22041354 HSPG2 1 G G A 48 C1orf87 127795 broad.mit.edu 36 1 60278292 60278292 + Missense_Mutation SNP C C T novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 60278292 60278292 C1orf87 1 C C T 30 RPRD2 23248 broad.mit.edu 36 1 148710426 148710426 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 148710426 148710426 RPRD2 1 G G A 44 CHIT1 1118 broad.mit.edu 36 1 201460810 201460810 + Silent SNP G G A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 201460810 201460810 CHIT1 1 G G A 37 C1orf95 375057 broad.mit.edu 36 1 224851216 224851216 + Missense_Mutation SNP C C A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 224851216 224851216 C1orf95 1 C C A 25 FRMPD2 143162 broad.mit.edu 36 10 49062833 49062833 + Silent SNP C C T novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 49062833 49062833 FRMPD2 10 C C T 31 CCDC6 8030 broad.mit.edu 36 10 61222782 61222782 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 61222782 61222782 CCDC6 10 G G A 41 OPN4 94233 broad.mit.edu 36 10 88409632 88409632 + Silent SNP G G A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 88409632 88409632 OPN4 10 G G A 43 MYOF 26509 broad.mit.edu 36 10 95079462 95079462 + Missense_Mutation SNP C C T novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 95079462 95079462 MYOF 10 C C T 31 KCNJ1 3758 broad.mit.edu 36 11 128214814 128214814 + Missense_Mutation SNP C C T novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 128214814 128214814 KCNJ1 11 C C T 27 KCNA5 3741 broad.mit.edu 36 12 5023889 5023889 + Silent SNP C C A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 5023889 5023889 KCNA5 12 C C A 25 ATXN2 6311 broad.mit.edu 36 12 110392426 110392426 + Missense_Mutation SNP T T C novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 110392426 110392426 ATXN2 12 T T C 51 PITPNM2 57605 broad.mit.edu 36 12 122063189 122063189 + Silent SNP G G C novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 122063189 122063189 PITPNM2 12 G G C 35 NUSAP1 51203 broad.mit.edu 36 15 39428673 39428673 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39428673 39428673 NUSAP1 15 G G A 42 CREBBP 1387 broad.mit.edu 36 16 3728597 3728597 + Missense_Mutation SNP A A G novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3728597 3728597 CREBBP 16 A A G 12 CHD9 80205 broad.mit.edu 36 16 51859340 51859340 + Silent SNP G G T novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 51859340 51859340 CHD9 16 G G T 44 ADAT1 23536 broad.mit.edu 36 16 74208646 74208646 + Missense_Mutation SNP C C A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74208646 74208646 ADAT1 16 C C A 26 P2RX5 5026 broad.mit.edu 36 17 3531948 3531949 + Missense_Mutation DNP TC TC AA novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 3531948 3531949 P2RX5 17 TC TC AA 54 TP53 7157 broad.mit.edu 36 17 7518990 7518990 + Missense_Mutation SNP A A G novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7518990 7518990 TP53 17 A A G 12 ARHGEF15 22899 broad.mit.edu 36 17 8157081 8157081 + Missense_Mutation SNP C C T novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8157081 8157081 ARHGEF15 17 C C T 31 FLII 2314 broad.mit.edu 36 17 18091253 18091253 + Silent SNP G G A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 18091253 18091253 FLII 17 G G A 45 KIAA0195 9772 broad.mit.edu 36 17 71000178 71000178 + Missense_Mutation SNP A A C novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71000178 71000178 KIAA0195 17 A A C 14 DLGAP1 9229 broad.mit.edu 36 18 3869897 3869897 + Missense_Mutation SNP C C T novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3869897 3869897 DLGAP1 18 C C T 19 CDC37 11140 broad.mit.edu 36 19 10367867 10367867 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10367867 10367867 CDC37 19 G G A 40 LILRA6 79168 broad.mit.edu 36 19 59436085 59436085 + Missense_Mutation SNP C C A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59436085 59436085 LILRA6 19 C C A 26 GALNT14 79623 broad.mit.edu 36 2 31042594 31042594 + Silent SNP C C T novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 31042594 31042594 GALNT14 2 C C T 27 GALNT13 114805 broad.mit.edu 36 2 155015182 155015182 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 155015182 155015182 GALNT13 2 G G A 37 EVX2 344191 broad.mit.edu 36 2 176656622 176656622 + Silent SNP C C A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 176656622 176656622 EVX2 2 C C A 27 PAX3 5077 broad.mit.edu 36 2 222868567 222868567 + Missense_Mutation SNP G G C novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 222868567 222868567 PAX3 2 G G C 44 ESF1 51575 broad.mit.edu 36 20 13704572 13704572 + Missense_Mutation SNP C C G novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13704572 13704572 ESF1 20 C C G 21 NINL 22981 broad.mit.edu 36 20 25446416 25446416 + Missense_Mutation SNP C C T novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 25446416 25446416 NINL 20 C C T 32 BPIL1 80341 broad.mit.edu 36 20 31072778 31072778 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31072778 31072778 BPIL1 20 G G A 40 FAM65C 140876 broad.mit.edu 36 20 48669995 48669995 + Silent SNP C C T novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 48669995 48669995 FAM65C 20 C C T 23 IL10RB 3588 broad.mit.edu 36 21 33574013 33574013 + Missense_Mutation SNP T T C novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 33574013 33574013 IL10RB 21 T T C 49 ITSN1 6453 broad.mit.edu 36 21 34013029 34013029 + Missense_Mutation SNP G G C novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34013029 34013029 ITSN1 21 G G C 44 PCNT 5116 broad.mit.edu 36 21 46594105 46594105 + Silent SNP G G C novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 46594105 46594105 PCNT 21 G G C 44 CLTCL1 8218 broad.mit.edu 36 22 17563895 17563895 + Nonsense_Mutation SNP C C T novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 17563895 17563895 CLTCL1 22 C C T 21 PROS1 5627 broad.mit.edu 36 3 95094613 95094613 + Missense_Mutation SNP C C T novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 95094613 95094613 PROS1 3 C C T 19 ZFP42 132625 broad.mit.edu 36 4 189161254 189161254 + Missense_Mutation SNP A A C novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 189161254 189161254 ZFP42 4 A A C 1 STK38 11329 broad.mit.edu 36 6 36574117 36574117 + Splice_Site_SNP SNP C C T novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 36574117 36574117 STK38 6 C C T 18 GRM1 2911 broad.mit.edu 36 6 146797326 146797326 + Missense_Mutation SNP G G A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 146797326 146797326 GRM1 6 G G A 37 MAS1 4142 broad.mit.edu 36 6 160248035 160248035 + Missense_Mutation SNP G G T novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 160248035 160248035 MAS1 6 G G T 47 C7orf64 84060 broad.mit.edu 36 7 92002196 92002196 + Silent SNP T T C novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 92002196 92002196 C7orf64 7 T T C 52 SVOPL 136306 broad.mit.edu 36 7 137961258 137961258 + Missense_Mutation SNP G G C novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 137961258 137961258 SVOPL 7 G G C 34 NOS3 4846 broad.mit.edu 36 7 150329335 150329335 + Silent SNP G G A novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 150329335 150329335 NOS3 7 G G A 43 ROD1 9991 broad.mit.edu 36 9 114029723 114029723 + Missense_Mutation SNP T T G novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 114029723 114029723 ROD1 9 T T G 62 CTAG2 30848 broad.mit.edu 36 X 153534019 153534019 + Missense_Mutation SNP G G T novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 153534019 153534019 CTAG2 23 G G T 43 UBXN11 91544 broad.mit.edu 36 1 26481399 26481476 + In_Frame_Del DEL CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA - CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 26481399 26481476 UBXN11 1 CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA - CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA 30 FAM86B2 653333 broad.mit.edu 36 8 12335964 12335966 + In_Frame_Del DEL CTG - CTG novel Unknown TCGA-31-1950-01 TCGA-31-1950-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 12335964 12335966 FAM86B2 8 CTG - CTG 32