Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context FAM73A 374986 broad.mit.edu 36 1 78081625 78081625 + Missense_Mutation SNP G G T novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 78081625 78081625 FAM73A 1 G G T 42 TCHHL1 126637 broad.mit.edu 36 1 150326075 150326075 + Missense_Mutation SNP T T G novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150326075 150326075 TCHHL1 1 T T G 50 LZTS2 84445 broad.mit.edu 36 10 102753460 102753460 + Missense_Mutation SNP T T A novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102753460 102753460 LZTS2 10 T T A 61 MS4A8B 83661 broad.mit.edu 36 11 60227519 60227519 + Nonsense_Mutation SNP C C G novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 60227519 60227519 MS4A8B 11 C C G 19 OVCH1 341350 broad.mit.edu 36 12 29521596 29521596 + Silent SNP T T C novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 29521596 29521596 OVCH1 12 T T C 56 ALG10B 144245 broad.mit.edu 36 12 36997041 36997041 + Missense_Mutation SNP T T A novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36997041 36997041 ALG10B 12 T T A 56 MON2 23041 broad.mit.edu 36 12 61258508 61258508 + Missense_Mutation SNP C C A novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 61258508 61258508 MON2 12 C C A 32 NUAK1 9891 broad.mit.edu 36 12 104985605 104985605 + Missense_Mutation SNP C C T novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 104985605 104985605 NUAK1 12 C C T 23 ACACB 32 broad.mit.edu 36 12 108089161 108089161 + Missense_Mutation SNP G G A novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 108089161 108089161 ACACB 12 G G A 43 TPP2 7174 broad.mit.edu 36 13 102128653 102128653 + Missense_Mutation SNP T T G novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102128653 102128653 TPP2 13 T T G 61 PRKD1 5587 broad.mit.edu 36 14 29169942 29169942 + Missense_Mutation SNP C C T novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29169942 29169942 PRKD1 14 C C T 20 HSPA2 3306 broad.mit.edu 36 14 64078539 64078539 + Missense_Mutation SNP G G A novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64078539 64078539 HSPA2 14 G G A 37 TMEM63C 57156 broad.mit.edu 36 14 76785535 76785535 + Missense_Mutation SNP C C G novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 76785535 76785535 TMEM63C 14 C C G 32 TAOK1 57551 broad.mit.edu 36 17 24893738 24893738 + Missense_Mutation SNP C C T novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 24893738 24893738 TAOK1 17 C C T 27 NF1 4763 broad.mit.edu 36 17 26678731 26678731 + Nonsense_Mutation SNP C C A novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 26678731 26678731 NF1 17 C C A 31 TOP2A 7153 broad.mit.edu 36 17 35799793 35799793 + Missense_Mutation SNP C C A novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 35799793 35799793 TOP2A 17 C C A 29 FAM108A1 81926 broad.mit.edu 36 19 1828545 1828545 + Silent SNP G G A novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 1828545 1828545 FAM108A1 19 G G A 39 CACNA1A 773 broad.mit.edu 36 19 13426965 13426965 + Nonsense_Mutation SNP G G A novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 13426965 13426965 CACNA1A 19 G G A 46 LYPD6B 130576 broad.mit.edu 36 2 149777755 149777755 + Missense_Mutation SNP C C T novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 149777755 149777755 LYPD6B 2 C C T 17 CDK5RAP1 51654 broad.mit.edu 36 20 31424166 31424166 + Splice_Site_SNP SNP T T A novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 31424166 31424166 CDK5RAP1 20 T T A 55 SALL4 57167 broad.mit.edu 36 20 49841662 49841662 + Missense_Mutation SNP G G C novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49841662 49841662 SALL4 20 G G C 36 USP25 29761 broad.mit.edu 36 21 16121176 16121176 + Silent SNP A A G novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 16121176 16121176 USP25 21 A A G 2 GABPA 2551 broad.mit.edu 36 21 26043237 26043237 + Missense_Mutation SNP T T C novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26043237 26043237 GABPA 21 T T C 61 MED12L 116931 broad.mit.edu 36 3 152393987 152393987 + Silent SNP A A G novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 152393987 152393987 MED12L 3 A A G 11 PCDHA5 56143 broad.mit.edu 36 5 140182202 140182202 + Missense_Mutation SNP G G A novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140182202 140182202 PCDHA5 5 G G A 37 PCDHGB1 56104 broad.mit.edu 36 5 140711189 140711189 + Missense_Mutation SNP C C A novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140711189 140711189 PCDHGB1 5 C C A 18 FAT2 2196 broad.mit.edu 36 5 150872082 150872082 + Silent SNP A A G novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 150872082 150872082 FAT2 5 A A G 8 GPRC6A 222545 broad.mit.edu 36 6 117234278 117234278 + Missense_Mutation SNP T T C novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 117234278 117234278 GPRC6A 6 T T C 50 PLEKHG1 57480 broad.mit.edu 36 6 151096881 151096881 + Missense_Mutation SNP C C A novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 151096881 151096881 PLEKHG1 6 C C A 18 SDK1 221935 broad.mit.edu 36 7 4055543 4055543 + Silent SNP C C T novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 4055543 4055543 SDK1 7 C C T 23 EPHB6 2051 broad.mit.edu 36 7 142271518 142271518 + Missense_Mutation SNP G G T novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 142271518 142271518 EPHB6 7 G G T 46 ABCF2 10061 broad.mit.edu 36 7 150543644 150543644 + Nonsense_Mutation SNP G G C novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 150543644 150543644 ABCF2 7 G G C 40 EYA1 2138 broad.mit.edu 36 8 72344570 72344570 + Missense_Mutation SNP G G A novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 72344570 72344570 EYA1 8 G G A 47 UBR5 51366 broad.mit.edu 36 8 103423938 103423938 + Missense_Mutation SNP T T C novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 103423938 103423938 UBR5 8 T T C 56 CSMD3 114788 broad.mit.edu 36 8 113472187 113472187 + Missense_Mutation SNP C C G novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113472187 113472187 CSMD3 8 C C G 17 ATAD2 29028 broad.mit.edu 36 8 124430768 124430768 + Missense_Mutation SNP G G T novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 124430768 124430768 ATAD2 8 G G T 41 FPGS 2356 broad.mit.edu 36 9 129609159 129609159 + Missense_Mutation SNP G G A novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 129609159 129609159 FPGS 9 G G A 38 TP53 7157 broad.mit.edu 36 17 7518901 7518901 + Splice_Site_SNP SNP C C T novel Unknown TCGA-30-1862-01 TCGA-30-1862-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Splice_Site_SNP SNP 7518901 7518901 TP53 17 C C T 18