Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context GABRD 2563 broad.mit.edu 36 1 1951290 1951290 + Silent SNP G G C novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 1951290 1951290 GABRD 1 G G C 45 NES 10763 broad.mit.edu 36 1 154906731 154906731 + Silent SNP G G A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 154906731 154906731 NES 1 G G A 37 RC3H1 149041 broad.mit.edu 36 1 172228718 172228718 + Missense_Mutation SNP T T A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 172228718 172228718 RC3H1 1 T T A 50 ACBD6 84320 broad.mit.edu 36 1 178524220 178524220 + Silent SNP G G A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 178524220 178524220 ACBD6 1 G G A 44 CENPF 1063 broad.mit.edu 36 1 212880170 212880170 + Nonsense_Mutation SNP G G A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 212880170 212880170 CENPF 1 G G A 41 OPTN 10133 broad.mit.edu 36 10 13207996 13207996 + Missense_Mutation SNP A A C novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13207996 13207996 OPTN 10 A A C 5 TTC17 55761 broad.mit.edu 36 11 43375487 43375487 + Missense_Mutation SNP T T A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43375487 43375487 TTC17 11 T T A 52 NOP2 4839 broad.mit.edu 36 12 6543333 6543333 + Missense_Mutation SNP C C T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6543333 6543333 NOP2 12 C C T 23 LOH12CR1 118426 broad.mit.edu 36 12 12405482 12405482 + Missense_Mutation SNP G G A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12405482 12405482 LOH12CR1 12 G G A 39 C12orf60 144608 broad.mit.edu 36 12 14867807 14867807 + Missense_Mutation SNP T T G novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 14867807 14867807 C12orf60 12 T T G 50 AHNAK2 113146 broad.mit.edu 36 14 104479745 104479745 + Missense_Mutation SNP T T A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 104479745 104479745 AHNAK2 14 T T A 50 GCOM1 145781 broad.mit.edu 36 15 55697672 55697672 + Missense_Mutation SNP C C G novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55697672 55697672 GCOM1 15 C C G 29 CDH15 1013 broad.mit.edu 36 16 87784315 87784315 + Missense_Mutation SNP G G A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 87784315 87784315 CDH15 16 G G A 39 TCF25 22980 broad.mit.edu 36 16 88486128 88486129 + Missense_Mutation DNP CC CC TT novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 88486128 88486129 TCF25 16 CC CC TT 22 NEURL4 84461 broad.mit.edu 36 17 7169370 7169370 + Missense_Mutation SNP C C T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7169370 7169370 NEURL4 17 C C T 22 TP53 7157 broad.mit.edu 36 17 7518272 7518272 + Missense_Mutation SNP C C T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7518272 7518272 TP53 17 C C T 26 ANGPTL4 51129 broad.mit.edu 36 19 8342379 8342379 + Missense_Mutation SNP G G T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8342379 8342379 ANGPTL4 19 G G T 41 SPTBN4 57731 broad.mit.edu 36 19 45730457 45730457 + Missense_Mutation SNP G G A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45730457 45730457 SPTBN4 19 G G A 39 ZNF749 388567 broad.mit.edu 36 19 62647610 62647610 + Missense_Mutation SNP C C G novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62647610 62647610 ZNF749 19 C C G 25 KIDINS220 57498 broad.mit.edu 36 2 8858020 8858020 + Silent SNP C C T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 8858020 8858020 KIDINS220 2 C C T 27 LRRTM4 80059 broad.mit.edu 36 2 77599406 77599406 + Missense_Mutation SNP A A G novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 77599406 77599406 LRRTM4 2 A A G 10 ORC4L 5000 broad.mit.edu 36 2 148409633 148409633 + Silent SNP A A G novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 148409633 148409633 ORC4L 2 A A G 11 ITGB6 3694 broad.mit.edu 36 2 160702284 160702284 + Missense_Mutation SNP T T C novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 160702284 160702284 ITGB6 2 T T C 49 UBOX5 22888 broad.mit.edu 36 20 3038781 3038781 + Missense_Mutation SNP T T C novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3038781 3038781 UBOX5 20 T T C 53 RBL1 5933 broad.mit.edu 36 20 35069252 35069252 + Silent SNP G G A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 35069252 35069252 RBL1 20 G G A 40 FAM83D 81610 broad.mit.edu 36 20 37014368 37014368 + Nonsense_Mutation SNP G G T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 37014368 37014368 FAM83D 20 G G T 41 BCAS1 8537 broad.mit.edu 36 20 52025338 52025338 + Missense_Mutation SNP C C A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52025338 52025338 BCAS1 20 C C A 32 PRDM15 63977 broad.mit.edu 36 21 42094832 42094832 + Silent SNP C C T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 42094832 42094832 PRDM15 21 C C T 23 TMPRSS3 64699 broad.mit.edu 36 21 42668909 42668909 + Silent SNP G G A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 42668909 42668909 TMPRSS3 21 G G A 41 SBF1 6305 broad.mit.edu 36 22 49246525 49246525 + Missense_Mutation SNP G G T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49246525 49246525 SBF1 22 G G T 38 TBC1D23 55773 broad.mit.edu 36 3 101503764 101503764 + Missense_Mutation SNP T T G novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101503764 101503764 TBC1D23 3 T T G 64 COPG 22820 broad.mit.edu 36 3 130462264 130462264 + Missense_Mutation SNP C C T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 130462264 130462264 COPG 3 C C T 19 COPG 22820 broad.mit.edu 36 3 130469502 130469502 + Missense_Mutation SNP A A G novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 130469502 130469502 COPG 3 A A G 10 C4orf29 80167 broad.mit.edu 36 4 129160698 129160698 + Missense_Mutation SNP C C T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 129160698 129160698 C4orf29 4 C C T 27 RICTOR 253260 broad.mit.edu 36 5 38983252 38983252 + Silent SNP C C T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 38983252 38983252 RICTOR 5 C C T 29 PCDHB10 56126 broad.mit.edu 36 5 140553698 140553698 + Missense_Mutation SNP C C A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140553698 140553698 PCDHB10 5 C C A 17 SQSTM1 8878 broad.mit.edu 36 5 179183612 179183612 + Silent SNP G G A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 179183612 179183612 SQSTM1 5 G G A 48 SLC22A23 63027 broad.mit.edu 36 6 3218558 3218558 + Silent SNP G G A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 3218558 3218558 SLC22A23 6 G G A 36 DHX16 8449 broad.mit.edu 36 6 30741282 30741282 + Missense_Mutation SNP G G T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30741282 30741282 DHX16 6 G G T 34 DHX16 8449 broad.mit.edu 36 6 30741394 30741394 + Missense_Mutation SNP C C A novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30741394 30741394 DHX16 6 C C A 20 ENPP4 22875 broad.mit.edu 36 6 46219244 46219244 + Missense_Mutation SNP C C T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 46219244 46219244 ENPP4 6 C C T 24 RNF216 54476 broad.mit.edu 36 7 5727257 5727257 + Missense_Mutation SNP C C T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5727257 5727257 RNF216 7 C C T 19 SEMA3E 9723 broad.mit.edu 36 7 82957408 82957408 + Silent SNP T T C novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 82957408 82957408 SEMA3E 7 T T C 49 ZKSCAN1 7586 broad.mit.edu 36 7 99468905 99468905 + Missense_Mutation SNP G G T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 99468905 99468905 ZKSCAN1 7 G G T 42 RECK 8434 broad.mit.edu 36 9 36092105 36092105 + Missense_Mutation SNP A A T novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36092105 36092105 RECK 9 A A T 11 GFPT2 9945 broad.mit.edu 36 5 179696183 179696183 + Frame_Shift_Del DEL C - C novel Unknown TCGA-30-1853-01 TCGA-30-1853-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 179696183 179696183 GFPT2 5 C - C 18