Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ART3	419	hgsc.bcm.edu	36	4	77222084	77222084	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	77222084	77222084	ART3	4	C	C	T	19
ATP13A4	84239	hgsc.bcm.edu	36	3	194607799	194607799	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	194607799	194607799	ATP13A4	3	G	G	T	39
CHRND	1144	hgsc.bcm.edu	36	2	233103001	233103001	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	233103001	233103001	CHRND	2	G	G	A	38
CIZ1	25792	hgsc.bcm.edu	36	9	129982566	129982566	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	129982566	129982566	CIZ1	9	G	G	C	35
COMMD3	23412	hgsc.bcm.edu	36	10	22645363	22645363	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	22645363	22645363	COMMD3	10	C	C	T	31
COPS5	10987	hgsc.bcm.edu	36	8	68136660	68136660	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	68136660	68136660	COPS5	8	C	C	A	31
DHX30	22907	hgsc.bcm.edu	36	3	47863232	47863232	+	Missense_Mutation	SNP	G	G	A	rs36045705	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47863232	47863232	DHX30	3	G	G	A	40
EGFR	1956	hgsc.bcm.edu	36	7	55226946	55226946	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	55226946	55226946	EGFR	7	A	A	T	10
EIF3E	3646	hgsc.bcm.edu	36	8	109284401	109284401	+	Indel	Indel	T	T	-	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Indel	Indel	109284401	109284401	EIF3E	8	T	T	-	52
FERD3L	222894	hgsc.bcm.edu	36	7	19151271	19151272	+	In_Frame_Ins	INS	-	-	TCT	rs34966908	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Ins	INS	19151271	19151272	FERD3L	7	-	-	TCT	24
GBP5	115362	hgsc.bcm.edu	36	1	89503201	89503201	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	89503201	89503201	GBP5	1	A	A	T	12
GDPD5	81544	hgsc.bcm.edu	36	11	74866335	74866335	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	74866335	74866335	GDPD5	11	G	G	A	38
GPRC6A	222545	hgsc.bcm.edu	36	6	117237275	117237275	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	117237275	117237275	GPRC6A	6	A	A	G	6
GPRIN2	9721	hgsc.bcm.edu	36	10	46419869	46419869	+	Missense_Mutation	SNP	C	C	G	rs4445576	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	46419869	46419869	GPRIN2	10	C	C	G	30
GSN	2934	hgsc.bcm.edu	36	9	123134620	123134620	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	123134620	123134620	GSN	9	T	T	C	64
INHBA	3624	hgsc.bcm.edu	36	7	41695822	41695822	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	41695822	41695822	INHBA	7	A	A	-	12
KLF6	1316	hgsc.bcm.edu	36	10	3814281	3814281	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	3814281	3814281	KLF6	10	T	T	C	52
L3MBTL	26013	hgsc.bcm.edu	36	20	41602222	41602222	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	41602222	41602222	L3MBTL	20	G	G	A	40
MCM4	4173	hgsc.bcm.edu	36	8	49045019	49045019	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	49045019	49045019	MCM4	8	G	G	A	40
MYH10	4628	hgsc.bcm.edu	36	17	8356518	8356518	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	8356518	8356518	MYH10	17	C	C	-	32
NBPF14	25832	hgsc.bcm.edu	36	1	146476133	146476133	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	146476133	146476133	NBPF14	1	C	C	T	23
NUF2	83540	hgsc.bcm.edu	36	1	161576840	161576840	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	161576840	161576840	NUF2	1	G	G	C	47
PNPLA8	50640	hgsc.bcm.edu	36	7	107942235	107942235	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	107942235	107942235	PNPLA8	7	A	A	C	4
RBL2	5934	hgsc.bcm.edu	36	16	52055717	52055717	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	52055717	52055717	RBL2	16	C	C	G	30
RBM25	58517	hgsc.bcm.edu	36	14	72645841	72645841	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	72645841	72645841	RBM25	14	A	A	G	3
RPS6KC1	26750	hgsc.bcm.edu	36	1	211470508	211470508	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	211470508	211470508	RPS6KC1	1	A	A	T	1
SCLT1	132320	hgsc.bcm.edu	36	4	130179665	130179665	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	130179665	130179665	SCLT1	4	C	C	G	17
SMOC2	64094	hgsc.bcm.edu	36	6	168750833	168750833	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	168750833	168750833	SMOC2	6	G	G	-	38
TBX3	6926	hgsc.bcm.edu	36	12	113599811	113599811	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	113599811	113599811	TBX3	12	C	C	-	25
U2AF2	11338	hgsc.bcm.edu	36	19	60871699	60871699	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	60871699	60871699	U2AF2	19	G	G	A	48
WDFY3	23001	hgsc.bcm.edu	36	4	85936871	85936871	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	85936871	85936871	WDFY3	4	T	T	A	56
ZNF286A	57335	hgsc.bcm.edu	36	17	15552269	15552269	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1634-01	TCGA-25-1634-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	15552269	15552269	ZNF286A	17	C	C	T	22