Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ACAT2	39	hgsc.bcm.edu	36	6	160103950	160103950	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	160103950	160103950	ACAT2	6	A	A	G	4
AP1B1	162	hgsc.bcm.edu	36	22	28067638	28067638	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	28067638	28067638	AP1B1	22	C	C	T	29
BCL9L	283149	hgsc.bcm.edu	36	11	118277095	118277095	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	118277095	118277095	BCL9L	11	T	T	A	57
BMP5	653	hgsc.bcm.edu	36	6	55847362	55847362	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	55847362	55847362	BMP5	6	G	G	T	47
C1orf66	51093	hgsc.bcm.edu	36	1	154973121	154973121	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	154973121	154973121	C1orf66	1	G	G	A	33
CATSPER1	117144	hgsc.bcm.edu	36	11	65544913	65544913	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	65544913	65544913	CATSPER1	11	G	G	A	45
CCL7	6354	hgsc.bcm.edu	36	17	29622313	29622313	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	29622313	29622313	CCL7	17	T	T	A	52
CREBBP	1387	hgsc.bcm.edu	36	16	3730513	3730513	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	3730513	3730513	CREBBP	16	G	G	A	39
CYLC1	1538	hgsc.bcm.edu	36	X	83015076	83015076	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	83015076	83015076	CYLC1	23	C	C	A	29
DDHD1	80821	hgsc.bcm.edu	36	14	52594974	52594975	+	Frame_Shift_Del	DEL	GT	GT	-	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	GT	GT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	52594974	52594975	DDHD1	14	GT	GT	-	36
FASTKD1	79675	hgsc.bcm.edu	36	2	170102782	170102782	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	170102782	170102782	FASTKD1	2	T	T	G	60
GPR176	11245	hgsc.bcm.edu	36	15	37880665	37880665	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	37880665	37880665	GPR176	15	C	C	A	32
HCN4	10021	hgsc.bcm.edu	36	15	71404530	71404530	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	71404530	71404530	HCN4	15	C	C	T	23
HPGD	3248	hgsc.bcm.edu	36	4	175675711	175675711	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	175675711	175675711	HPGD	4	G	G	A	33
LPAR3	23566	hgsc.bcm.edu	36	1	85052402	85052402	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	85052402	85052402	LPAR3	1	C	C	T	25
MAS1L	116511	hgsc.bcm.edu	36	6	29563331	29563331	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	29563331	29563331	MAS1L	6	C	C	A	18
MCM3AP	8888	hgsc.bcm.edu	36	21	46479757	46479757	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	46479757	46479757	MCM3AP	21	C	C	T	29
MRPS22	56945	hgsc.bcm.edu	36	3	140552585	140552585	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	140552585	140552585	MRPS22	3	A	A	G	16
MYH2	4620	hgsc.bcm.edu	36	17	10375771	10375771	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	10375771	10375771	MYH2	17	G	G	A	40
NHS	4810	hgsc.bcm.edu	36	X	17660270	17660270	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	17660270	17660270	NHS	23	C	C	T	30
NKAPL	222698	hgsc.bcm.edu	36	6	28336131	28336131	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	28336131	28336131	NKAPL	6	G	G	A	45
OPTN	10133	hgsc.bcm.edu	36	10	13206088	13206088	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	13206088	13206088	OPTN	10	G	G	C	45
OR10H2	26538	hgsc.bcm.edu	36	19	15700078	15700078	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	15700078	15700078	OR10H2	19	G	G	A	47
OR2B11	127623	hgsc.bcm.edu	36	1	245681884	245681884	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	245681884	245681884	OR2B11	1	G	G	-	33
PKHD1	5314	hgsc.bcm.edu	36	6	51840795	51840795	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	51840795	51840795	PKHD1	6	G	G	A	45
SLC12A3	6559	hgsc.bcm.edu	36	16	55483539	55483539	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	55483539	55483539	SLC12A3	16	C	C	A	27
SLC30A8	169026	hgsc.bcm.edu	36	8	118239252	118239252	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	118239252	118239252	SLC30A8	8	C	C	T	27
STC2	8614	hgsc.bcm.edu	36	5	172687737	172687737	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	172687737	172687737	STC2	5	C	C	G	27
TNFAIP3	7128	hgsc.bcm.edu	36	6	138244029	138244029	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	138244029	138244029	TNFAIP3	6	G	G	A	34
TP53	7157	hgsc.bcm.edu	36	17	7520036	7520036	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	7520036	7520036	TP53	17	C	C	A	18
ZFYVE9	9372	hgsc.bcm.edu	36	1	52571104	52571104	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1631-01	TCGA-25-1631-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	52571104	52571104	ZFYVE9	1	A	A	T	8