Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ACOT9	23597	hgsc.bcm.edu	36	X	23633835	23633835	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1626-01	TCGA-25-1626-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	23633835	23633835	ACOT9	23	G	G	C	36
DNASE2	1777	hgsc.bcm.edu	36	19	12847912	12847912	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-1626-01	TCGA-25-1626-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	12847912	12847912	DNASE2	19	T	T	G	59
EXOC4	60412	hgsc.bcm.edu	36	7	132965359	132965359	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1626-01	TCGA-25-1626-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	132965359	132965359	EXOC4	7	T	T	C	52
KIAA0195	9772	hgsc.bcm.edu	36	17	71002621	71002621	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1626-01	TCGA-25-1626-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	71002621	71002621	KIAA0195	17	C	C	G	30
LEMD3	23592	hgsc.bcm.edu	36	12	63921033	63921033	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1626-01	TCGA-25-1626-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	63921033	63921033	LEMD3	12	G	G	A	37
MDH1B	130752	hgsc.bcm.edu	36	2	207333927	207333927	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1626-01	TCGA-25-1626-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	207333927	207333927	MDH1B	2	T	T	C	64
NIPBL	25836	hgsc.bcm.edu	36	5	37055186	37055186	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1626-01	TCGA-25-1626-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	37055186	37055186	NIPBL	5	A	A	G	12
PSMB4	5692	hgsc.bcm.edu	36	1	149639671	149639671	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1626-01	TCGA-25-1626-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	149639671	149639671	PSMB4	1	C	C	G	28
RRP1B	23076	hgsc.bcm.edu	36	21	43932516	43932516	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1626-01	TCGA-25-1626-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	43932516	43932516	RRP1B	21	G	G	T	46
SEC63	11231	hgsc.bcm.edu	36	6	108321448	108321448	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-25-1626-01	TCGA-25-1626-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	108321448	108321448	SEC63	6	T	T	-	60
TET2	54790	hgsc.bcm.edu	36	4	106376199	106376199	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1626-01	TCGA-25-1626-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	106376199	106376199	TET2	4	G	G	C	33
TP53	7157	hgsc.bcm.edu	36	17	7518272	7518272	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1626-01	TCGA-25-1626-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7518272	7518272	TP53	17	C	C	A	26