Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
SLC6A11	6538	genome.wustl.edu	36	3	10891711	10891711	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	10891711	10891711	SLC6A11	3	G	G	A	40
OR4L1	122742	genome.wustl.edu	36	14	19598093	19598093	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	19598093	19598093	OR4L1	14	T	T	C	64
KCNJ12	3768	genome.wustl.edu	36	17	21259375	21259375	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	G	G	G	A	G	A	Unknown	Valid	Germline	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	21259375	21259375	KCNJ12	17	G	G	A	38
RTDR1	27156	genome.wustl.edu	36	22	21731715	21731715	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	21731715	21731715	RTDR1	22	G	G	A	40
CDH10	1008	genome.wustl.edu	36	5	24573255	24573255	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	24573255	24573255	CDH10	5	A	A	G	10
KRAS	3845	genome.wustl.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	A	18
TRIM39	56658	genome.wustl.edu	36	6	30416065	30416065	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	30416065	30416065	TRIM39	6	A	A	G	12
C2	717	genome.wustl.edu	36	6	32004487	32004487	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	32004487	32004487	C2	6	G	G	A	34
DLGAP4	22839	genome.wustl.edu	36	20	34561482	34561482	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	34561482	34561482	DLGAP4	20	G	G	A	35
KBTBD7	84078	genome.wustl.edu	36	13	40665783	40665783	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	40665783	40665783	KBTBD7	13	C	C	A	28
DST	667	genome.wustl.edu	36	6	56589822	56589822	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	56589822	56589822	DST	6	C	C	T	31
GPR44	11251	genome.wustl.edu	36	11	60377379	60377379	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	60377379	60377379	GPR44	11	C	C	A	25
CDH17	1015	genome.wustl.edu	36	8	95258002	95258002	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	95258002	95258002	CDH17	8	G	G	A	37
IGHG2		genome.wustl.edu	36	14	105180646	105180646	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	105180646	105180646	IGHG2	14	A	A	G	8
MMP21	118856	genome.wustl.edu	36	10	127445243	127445243	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	127445243	127445243	MMP21	10	T	T	C	51
FBXW7	55294	genome.wustl.edu	36	4	153466739	153466739	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	153466739	153466739	FBXW7	4	G	G	A	39
PTPRN2	5799	genome.wustl.edu	36	7	157054389	157054389	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	157054389	157054389	PTPRN2	7	G	G	A	41
ABCB11	8647	genome.wustl.edu	36	2	169500012	169500012	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	169500012	169500012	ABCB11	2	G	G	A	38
ERGIC1	57222	genome.wustl.edu	36	5	172256654	172256654	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	172256654	172256654	ERGIC1	5	G	G	A	39
PTPRS	5802	genome.wustl.edu	36	19	5195110	5195110	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	5195110	5195110	PTPRS	19	G	G	-	39
KCNJ11	3767	genome.wustl.edu	36	11	17365114	17365121	+	Frame_Shift_Del	DEL	GGGCCCGC	GGGCCCGC	-	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	GGGCCCGC	GGGCCCGC	GGGCCCGC	-	GGGCCCGC	GGGCCCGC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	17365114	17365121	KCNJ11	11	GGGCCCGC	GGGCCCGC	-	43
ADCYAP1R1	117	genome.wustl.edu	36	7	31090934	31090934	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	31090934	31090934	ADCYAP1R1	7	G	G	-	40
SLC39A6	25800	genome.wustl.edu	36	18	31956135	31956137	+	Indel	Indel	-TA	-TA	G-	novel	Unknown	TCGA-25-1316-01	TCGA-25-1316-10	TA	TA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Indel	Indel	31956135	31956137	SLC39A6	18	-TA	-TA	G-	32