Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context PRAMEF10 343071 broad.mit.edu 36 1 12877151 12877151 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12877151 12877151 PRAMEF10 1 G G T 42 EIF4G3 8672 broad.mit.edu 36 1 21050446 21050446 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21050446 21050446 EIF4G3 1 G G C 45 EPB41 2035 broad.mit.edu 36 1 29308495 29308495 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29308495 29308495 EPB41 1 T T C 50 HPCA 3208 broad.mit.edu 36 1 33127444 33127444 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 33127444 33127444 HPCA 1 G G C 41 TRIT1 54802 broad.mit.edu 36 1 40091117 40091117 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40091117 40091117 TRIT1 1 C C T 29 TIE1 7075 broad.mit.edu 36 1 43559540 43559540 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43559540 43559540 TIE1 1 G G T 36 DPYD 1806 broad.mit.edu 36 1 98066259 98066259 + Nonsense_Mutation SNP T T A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 98066259 98066259 DPYD 1 T T A 54 MYBPHL 343263 broad.mit.edu 36 1 109641626 109641626 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 109641626 109641626 MYBPHL 1 T T G 63 EPS8L3 79574 broad.mit.edu 36 1 110102785 110102785 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 110102785 110102785 EPS8L3 1 G G C 47 IGSF3 3321 broad.mit.edu 36 1 116923765 116923765 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 116923765 116923765 IGSF3 1 C C T 19 ANKRD35 148741 broad.mit.edu 36 1 144274407 144274407 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 144274407 144274407 ANKRD35 1 A A T 1 RPRD2 23248 broad.mit.edu 36 1 148685445 148685445 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 148685445 148685445 RPRD2 1 G G C 41 FLG2 388698 broad.mit.edu 36 1 150595170 150595170 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150595170 150595170 FLG2 1 C C G 21 NTRK1 4914 broad.mit.edu 36 1 155108112 155108112 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 155108112 155108112 NTRK1 1 C C T 19 NTRK1 4914 broad.mit.edu 36 1 155112605 155112605 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 155112605 155112605 NTRK1 1 C C A 17 FCRL5 83416 broad.mit.edu 36 1 155775561 155775561 + Silent SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 155775561 155775561 FCRL5 1 G G A 36 GPR161 23432 broad.mit.edu 36 1 166340600 166340600 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 166340600 166340600 GPR161 1 G G C 44 AVPR1B 553 broad.mit.edu 36 1 204391551 204391551 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 204391551 204391551 AVPR1B 1 T T A 50 ZNF485 220992 broad.mit.edu 36 10 43424101 43424101 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43424101 43424101 ZNF485 10 T T G 56 PAPSS2 9060 broad.mit.edu 36 10 89493176 89493176 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 89493176 89493176 PAPSS2 10 C C G 20 EXOC6 54536 broad.mit.edu 36 10 94644724 94644724 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 94644724 94644724 EXOC6 10 A A G 2 SLIT1 6585 broad.mit.edu 36 10 98797726 98797726 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 98797726 98797726 SLIT1 10 T T A 51 ACADSB 36 broad.mit.edu 36 10 124790132 124790132 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 124790132 124790132 ACADSB 10 C C G 17 OR52A4 390053 broad.mit.edu 36 11 5098948 5098948 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5098948 5098948 OR52A4 11 G G T 36 OR52N5 390075 broad.mit.edu 36 11 5756083 5756083 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 5756083 5756083 OR52N5 11 C C A 30 SMPD1 6609 broad.mit.edu 36 11 6372317 6372317 + Silent SNP T T G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 6372317 6372317 SMPD1 11 T T G 55 OR6A2 8590 broad.mit.edu 36 11 6773415 6773415 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6773415 6773415 OR6A2 11 A A G 7 OR4C46 119749 broad.mit.edu 36 11 51372532 51372532 + Silent SNP T T A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 51372532 51372532 OR4C46 11 T T A 54 OR6Q1 219952 broad.mit.edu 36 11 57555327 57555327 + Silent SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 57555327 57555327 OR6Q1 11 C C A 24 OR1S2 219958 broad.mit.edu 36 11 57727866 57727866 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 57727866 57727866 OR1S2 11 C C T 19 AHNAK 79026 broad.mit.edu 36 11 62047742 62047742 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62047742 62047742 AHNAK 11 G G A 42 CPT1A 1374 broad.mit.edu 36 11 68304710 68304710 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 68304710 68304710 CPT1A 11 C C A 25 ARHGEF17 9828 broad.mit.edu 36 11 72753257 72753257 + Silent SNP A A G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 72753257 72753257 ARHGEF17 11 A A G 11 FAT3 120114 broad.mit.edu 36 11 92134759 92134759 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 92134759 92134759 FAT3 11 G G T 36 DYNC2H1 79659 broad.mit.edu 36 11 102532374 102532374 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102532374 102532374 DYNC2H1 11 A A T 14 DSCAML1 57453 broad.mit.edu 36 11 116804321 116804321 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 116804321 116804321 DSCAML1 11 G G A 48 TECTA 7007 broad.mit.edu 36 11 120542593 120542593 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 120542593 120542593 TECTA 11 G G C 35 CRTAM 56253 broad.mit.edu 36 11 122231653 122231653 + Nonsense_Mutation SNP T T A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 122231653 122231653 CRTAM 11 T T A 57 ARHGAP32 9743 broad.mit.edu 36 11 128348499 128348499 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 128348499 128348499 ARHGAP32 11 C C A 17 SLC2A14 144195 broad.mit.edu 36 12 7858391 7858391 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7858391 7858391 SLC2A14 12 A A C 1 GPRC5A 9052 broad.mit.edu 36 12 12953037 12953037 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12953037 12953037 GPRC5A 12 C C T 30 HOXC9 3225 broad.mit.edu 36 12 52682671 52682671 + Silent SNP A A G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 52682671 52682671 HOXC9 12 A A G 9 DGKA 1606 broad.mit.edu 36 12 54632843 54632843 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54632843 54632843 DGKA 12 A A C 2 CS 1431 broad.mit.edu 36 12 54953669 54953669 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54953669 54953669 CS 12 T T C 52 SOCS2 8835 broad.mit.edu 36 12 92492704 92492704 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 92492704 92492704 SOCS2 12 T T A 52 CUX2 23316 broad.mit.edu 36 12 110270422 110270422 + Silent SNP G G C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 110270422 110270422 CUX2 12 G G C 42 RNASE13 440163 broad.mit.edu 36 14 20572058 20572058 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 20572058 20572058 RNASE13 14 G G T 42 C14orf28 122525 broad.mit.edu 36 14 44439458 44439458 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44439458 44439458 C14orf28 14 A A T 15 ZBTB25 7597 broad.mit.edu 36 14 64024422 64024422 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64024422 64024422 ZBTB25 14 G G A 37 ASB2 51676 broad.mit.edu 36 14 93487194 93487194 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 93487194 93487194 ASB2 14 C C T 28 C15orf2 23742 broad.mit.edu 36 15 22473975 22473975 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 22473975 22473975 C15orf2 15 C C A 21 C15ORF63 25764 broad.mit.edu 36 15 41880188 41880188 + Silent SNP C C A rs34257400 Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 41880188 41880188 C15ORF63 15 C C A 19 FBN1 2200 broad.mit.edu 36 15 46495237 46495237 + Silent SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 46495237 46495237 FBN1 15 G G A 38 UNC13C 440279 broad.mit.edu 36 15 52094181 52094181 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52094181 52094181 UNC13C 15 C C A 24 VPS13C 54832 broad.mit.edu 36 15 59986810 59986810 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59986810 59986810 VPS13C 15 G G T 44 CELF6 60677 broad.mit.edu 36 15 70367937 70367937 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70367937 70367937 CELF6 15 T T G 54 RASGRF1 5923 broad.mit.edu 36 15 77079305 77079305 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 77079305 77079305 RASGRF1 15 G G A 43 SH3GL3 6457 broad.mit.edu 36 15 82078026 82078026 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 82078026 82078026 SH3GL3 15 G G A 40 NOMO1 23420 broad.mit.edu 36 16 14868039 14868039 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 14868039 14868039 NOMO1 16 C C T 26 SRCAP 10847 broad.mit.edu 36 16 30648363 30648363 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30648363 30648363 SRCAP 16 C C G 30 PRSS36 146547 broad.mit.edu 36 16 31062438 31062438 + Silent SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 31062438 31062438 PRSS36 16 C C T 22 CNGB1 1258 broad.mit.edu 36 16 56514760 56514760 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 56514760 56514760 CNGB1 16 C C A 29 FAM92B 339145 broad.mit.edu 36 16 83696482 83696482 + Silent SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 83696482 83696482 FAM92B 16 C C A 21 SPG7 6687 broad.mit.edu 36 16 88104410 88104410 + Silent SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 88104410 88104410 SPG7 16 G G A 45 ULK2 9706 broad.mit.edu 36 17 19641529 19641529 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19641529 19641529 ULK2 17 C C A 32 SEZ6 124925 broad.mit.edu 36 17 24309175 24309175 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 24309175 24309175 SEZ6 17 G G T 43 ACCN1 40 broad.mit.edu 36 17 29507517 29507517 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29507517 29507517 ACCN1 17 C C T 19 TAF15 8148 broad.mit.edu 36 17 31189590 31189590 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31189590 31189590 TAF15 17 A A T 10 CACNA1G 8913 broad.mit.edu 36 17 46042290 46042290 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 46042290 46042290 CACNA1G 17 C C G 27 MSI2 124540 broad.mit.edu 36 17 52689853 52689853 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52689853 52689853 MSI2 17 T T G 64 PPM1E 22843 broad.mit.edu 36 17 54412474 54412474 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54412474 54412474 PPM1E 17 G G T 41 SEC14L1 6397 broad.mit.edu 36 17 72698958 72698959 + Missense_Mutation DNP GG GG CC novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 72698958 72698959 SEC14L1 17 GG GG CC 39 DSG1 1828 broad.mit.edu 36 18 27177479 27177479 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27177479 27177479 DSG1 18 G G T 48 GALNT1 2589 broad.mit.edu 36 18 31488699 31488699 + Silent SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 31488699 31488699 GALNT1 18 G G A 46 PTPRS 5802 broad.mit.edu 36 19 5216025 5216025 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 5216025 5216025 PTPRS 19 G G A 38 TMEM146 257062 broad.mit.edu 36 19 5723900 5723900 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5723900 5723900 TMEM146 19 C C G 26 INSR 3643 broad.mit.edu 36 19 7073978 7073978 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7073978 7073978 INSR 19 G G T 41 COL5A3 50509 broad.mit.edu 36 19 9945475 9945475 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 9945475 9945475 COL5A3 19 C C A 22 DNM2 1785 broad.mit.edu 36 19 10769071 10769071 + Silent SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 10769071 10769071 DNM2 19 C C A 22 NDUFA13 51079 broad.mit.edu 36 19 19488083 19488083 + Silent SNP G G C rs11552886 Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 19488083 19488083 NDUFA13 19 G G C 38 ZNF546 339327 broad.mit.edu 36 19 45205083 45205083 + Silent SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 45205083 45205083 ZNF546 19 C C T 19 GRIN2D 2906 broad.mit.edu 36 19 53616922 53616922 + Silent SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 53616922 53616922 GRIN2D 19 G G A 33 GRIN2D 2906 broad.mit.edu 36 19 53616989 53616989 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53616989 53616989 GRIN2D 19 G G A 41 GYS1 2997 broad.mit.edu 36 19 54177339 54177339 + Silent SNP G G C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 54177339 54177339 GYS1 19 G G C 45 KIR3DL3 115653 broad.mit.edu 36 19 59938560 59938560 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59938560 59938560 KIR3DL3 19 T T G 63 NLRP8 126205 broad.mit.edu 36 19 61155718 61155718 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 61155718 61155718 NLRP8 19 A A C 8 C2orf56 55471 broad.mit.edu 36 2 37326751 37326751 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37326751 37326751 C2orf56 2 T T C 50 ADD2 119 broad.mit.edu 36 2 70773175 70773175 + Silent SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 70773175 70773175 ADD2 2 C C T 21 C2orf78 388960 broad.mit.edu 36 2 73894502 73894502 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73894502 73894502 C2orf78 2 C C A 26 TET3 200424 broad.mit.edu 36 2 74128888 74128888 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74128888 74128888 TET3 2 G G A 41 ARHGEF4 50649 broad.mit.edu 36 2 131517605 131517605 + Silent SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 131517605 131517605 ARHGEF4 2 C C T 18 PKP4 8502 broad.mit.edu 36 2 159196682 159196682 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 159196682 159196682 PKP4 2 T T C 63 PDE11A 50940 broad.mit.edu 36 2 178478154 178478154 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 178478154 178478154 PDE11A 2 G G T 46 DNAH7 56171 broad.mit.edu 36 2 196369690 196369690 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 196369690 196369690 DNAH7 2 T T A 64 CYP20A1 57404 broad.mit.edu 36 2 203851653 203851653 + Silent SNP A A G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 203851653 203851653 CYP20A1 2 A A G 2 UGT1A5 54579 broad.mit.edu 36 2 234286633 234286633 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 234286633 234286633 UGT1A5 2 A A C 7 OR6B3 150681 broad.mit.edu 36 2 240633892 240633892 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 240633892 240633892 OR6B3 2 G G A 40 TGIF2 60436 broad.mit.edu 36 20 34653074 34653074 + Silent SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 34653074 34653074 TGIF2 20 C C T 29 ZNF831 128611 broad.mit.edu 36 20 57262744 57262744 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 57262744 57262744 ZNF831 20 C C A 22 KRTAP20-2 337976 broad.mit.edu 36 21 30929624 30929624 + Silent SNP A A T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 30929624 30929624 KRTAP20-2 21 A A T 9 PRDM15 63977 broad.mit.edu 36 21 42119469 42119469 + Silent SNP T T C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 42119469 42119469 PRDM15 21 T T C 54 TMEM211 255349 broad.mit.edu 36 22 23664229 23664229 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23664229 23664229 TMEM211 22 C C G 26 NCF4 4689 broad.mit.edu 36 22 35601812 35601812 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 35601812 35601812 NCF4 22 C C A 26 C3orf32 51066 broad.mit.edu 36 3 8650578 8650578 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8650578 8650578 C3orf32 3 G G C 35 KCNH8 131096 broad.mit.edu 36 3 19359136 19359136 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19359136 19359136 KCNH8 3 C C G 19 EOMES 8320 broad.mit.edu 36 3 27733589 27733589 + Nonsense_Mutation SNP A A C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 27733589 27733589 EOMES 3 A A C 4 NBEAL2 23218 broad.mit.edu 36 3 47021022 47021023 + Missense_Mutation DNP TA TA CC novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 47021022 47021023 NBEAL2 3 TA TA CC 57 DNAH1 25981 broad.mit.edu 36 3 52378894 52378894 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52378894 52378894 DNAH1 3 T T C 51 CADPS 8618 broad.mit.edu 36 3 62474372 62474372 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62474372 62474372 CADPS 3 T T G 56 PHLDB2 90102 broad.mit.edu 36 3 113155478 113155478 + Silent SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 113155478 113155478 PHLDB2 3 C C A 22 PFN2 5217 broad.mit.edu 36 3 151168850 151168850 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 151168850 151168850 PFN2 3 C C G 23 TACC3 10460 broad.mit.edu 36 4 1712363 1712363 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1712363 1712363 TACC3 4 A A G 3 WHSC1 7468 broad.mit.edu 36 4 1889755 1889755 + Silent SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 1889755 1889755 WHSC1 4 G G A 34 PDGFRA 5156 broad.mit.edu 36 4 54824777 54824777 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54824777 54824777 PDGFRA 4 G G A 43 DMP1 1758 broad.mit.edu 36 4 88802290 88802290 + Silent SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 88802290 88802290 DMP1 4 C C T 17 FGA 2243 broad.mit.edu 36 4 155726409 155726409 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 155726409 155726409 FGA 4 A A T 10 RAPGEF2 9693 broad.mit.edu 36 4 160484003 160484003 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 160484003 160484003 RAPGEF2 4 C C T 20 DNAH5 1767 broad.mit.edu 36 5 13966898 13966898 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13966898 13966898 DNAH5 5 T T G 63 RICTOR 253260 broad.mit.edu 36 5 39000703 39000703 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39000703 39000703 RICTOR 5 G G A 42 GHR 2690 broad.mit.edu 36 5 42754535 42754535 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 42754535 42754535 GHR 5 G G C 48 C5orf34 375444 broad.mit.edu 36 5 43544461 43544461 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43544461 43544461 C5orf34 5 G G C 44 KIF3A 11127 broad.mit.edu 36 5 132066159 132066159 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 132066159 132066159 KIF3A 5 G G A 46 AFF4 27125 broad.mit.edu 36 5 132251476 132251476 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 132251476 132251476 AFF4 5 G G A 41 IK 3550 broad.mit.edu 36 5 140011547 140011547 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140011547 140011547 IK 5 G G T 46 PCDHA4 56144 broad.mit.edu 36 5 140168261 140168261 + Silent SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 140168261 140168261 PCDHA4 5 G G A 48 TCERG1 10915 broad.mit.edu 36 5 145867680 145867680 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 145867680 145867680 TCERG1 5 C C G 30 DSP 1832 broad.mit.edu 36 6 7523100 7523100 + Silent SNP T T C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 7523100 7523100 DSP 6 T T C 55 SLC17A1 6568 broad.mit.edu 36 6 25919879 25919879 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 25919879 25919879 SLC17A1 6 G G T 38 HIST1H1A 3024 broad.mit.edu 36 6 26125728 26125728 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26125728 26125728 HIST1H1A 6 G G A 42 C6orf142 90523 broad.mit.edu 36 6 54203611 54203611 + Silent SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 54203611 54203611 C6orf142 6 C C T 24 BAI3 577 broad.mit.edu 36 6 69405712 69405712 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69405712 69405712 BAI3 6 C C A 17 OLIG3 167826 broad.mit.edu 36 6 137856904 137856904 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 137856904 137856904 OLIG3 6 G G T 47 AIG1 51390 broad.mit.edu 36 6 143423879 143423879 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 143423879 143423879 AIG1 6 C C G 24 CARD11 84433 broad.mit.edu 36 7 2921464 2921464 + Silent SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 2921464 2921464 CARD11 7 C C T 30 SDK1 221935 broad.mit.edu 36 7 3958009 3958009 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3958009 3958009 SDK1 7 G G T 40 GTF2IRD1 9569 broad.mit.edu 36 7 73560391 73560391 + Silent SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 73560391 73560391 GTF2IRD1 7 C C T 27 YWHAG 7532 broad.mit.edu 36 7 75797285 75797286 + Missense_Mutation DNP AC AC TT novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 75797285 75797286 YWHAG 7 AC AC TT 6 RNF133 168433 broad.mit.edu 36 7 122125424 122125424 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 122125424 122125424 RNF133 7 C C A 27 CPA5 93979 broad.mit.edu 36 7 129794613 129794613 + Nonsense_Mutation SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 129794613 129794613 CPA5 7 C C T 23 RAB11FIP1 80223 broad.mit.edu 36 8 37854031 37854031 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37854031 37854031 RAB11FIP1 8 A A T 11 C8orf45 157777 broad.mit.edu 36 8 67970964 67970964 + Nonsense_Mutation SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 67970964 67970964 C8orf45 8 G G T 41 MTERFD1 51001 broad.mit.edu 36 8 97325405 97325405 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 97325405 97325405 MTERFD1 8 T T A 52 ZNF572 137209 broad.mit.edu 36 8 126058708 126058708 + Silent SNP T T C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 126058708 126058708 ZNF572 8 T T C 57 FAM135B 51059 broad.mit.edu 36 8 139214033 139214033 + Silent SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 139214033 139214033 FAM135B 8 G G T 45 VLDLR 7436 broad.mit.edu 36 9 2635614 2635614 + Silent SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 2635614 2635614 VLDLR 9 C C T 29 JAK2 3717 broad.mit.edu 36 9 5055041 5055041 + Splice_Site_SNP SNP G G C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 5055041 5055041 JAK2 9 G G C 40 PTPRD 5789 broad.mit.edu 36 9 8475897 8475897 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8475897 8475897 PTPRD 9 G G A 41 LINGO2 158038 broad.mit.edu 36 9 27939897 27939897 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27939897 27939897 LINGO2 9 T T C 60 CNTFR 1271 broad.mit.edu 36 9 34542726 34542726 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34542726 34542726 CNTFR 9 C C T 27 FLJ46321 389763 broad.mit.edu 36 9 83797131 83797131 + Silent SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 83797131 83797131 FLJ46321 9 G G T 47 OMD 4958 broad.mit.edu 36 9 94217401 94217401 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 94217401 94217401 OMD 9 G G C 48 ZDHHC12 84885 broad.mit.edu 36 9 130526129 130526129 + Nonsense_Mutation SNP C C T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 130526129 130526129 ZDHHC12 9 C C T 21 C9orf7 11094 broad.mit.edu 36 9 135322963 135322963 + Silent SNP G G T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 135322963 135322963 C9orf7 9 G G T 47 SERPINA7 6906 broad.mit.edu 36 X 105167461 105167461 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 105167461 105167461 SERPINA7 23 A A T 1 SAGE1 55511 broad.mit.edu 36 X 134818353 134818353 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 134818353 134818353 SAGE1 23 G G A 37 C10orf140 387640 broad.mit.edu 36 10 21845472 21845473 + In_Frame_Ins INS - CCTCCT - novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Ins INS 21845472 21845473 C10orf140 10 - CCTCCT - 22 CCDC87 55231 broad.mit.edu 36 11 66114997 66115015 + Frame_Shift_Del DEL GACCACAGTTGTTCCAGAT - GACCACAGTTGTTCCAGAT novel Unknown TCGA-24-2280-01 TCGA-24-2280-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 66114997 66115015 CCDC87 11 GACCACAGTTGTTCCAGAT - GACCACAGTTGTTCCAGAT 33