Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context CCNL2 81669 broad.mit.edu 36 1 1324415 1324415 + Silent SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 1324415 1324415 CCNL2 1 C C T 25 RWDD3 25950 broad.mit.edu 36 1 95482369 95482369 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 95482369 95482369 RWDD3 1 G G C 40 GJA8 2703 broad.mit.edu 36 1 145846993 145846993 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 145846993 145846993 GJA8 1 C C T 27 CYB5R1 51706 broad.mit.edu 36 1 201199452 201199452 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 201199452 201199452 CYB5R1 1 G G A 39 FMN2 56776 broad.mit.edu 36 1 238437689 238437689 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 238437689 238437689 FMN2 1 G G C 42 C10orf140 387640 broad.mit.edu 36 10 21844265 21844265 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21844265 21844265 C10orf140 10 C C A 24 LDB3 11155 broad.mit.edu 36 10 88449030 88449030 + Silent SNP G G T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 88449030 88449030 LDB3 10 G G T 39 AGAP11 119385 broad.mit.edu 36 10 88759447 88759447 + Silent SNP A A T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 88759447 88759447 AGAP11 10 A A T 11 C11orf40 143501 broad.mit.edu 36 11 4551123 4551123 + Nonsense_Mutation SNP G G T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 4551123 4551123 C11orf40 11 G G T 34 TRIM3 10612 broad.mit.edu 36 11 6434785 6434785 + Silent SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 6434785 6434785 TRIM3 11 G G A 46 TTC17 55761 broad.mit.edu 36 11 43429369 43429369 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43429369 43429369 TTC17 11 G G A 37 OR4D10 390197 broad.mit.edu 36 11 59001784 59001784 + Silent SNP T T C novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 59001784 59001784 OR4D10 11 T T C 62 ASRGL1 80150 broad.mit.edu 36 11 61881104 61881104 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 61881104 61881104 ASRGL1 11 C C G 30 C11orf30 56946 broad.mit.edu 36 11 75902227 75902227 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 75902227 75902227 C11orf30 11 G G A 47 IGSF9B 22997 broad.mit.edu 36 11 133295556 133295556 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 133295556 133295556 IGSF9B 11 G G T 43 NINJ2 4815 broad.mit.edu 36 12 545486 545486 + Silent SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 545486 545486 NINJ2 12 C C T 24 ANKRD52 283373 broad.mit.edu 36 12 54932611 54932611 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54932611 54932611 ANKRD52 12 A A C 8 UBE3B 89910 broad.mit.edu 36 12 108446298 108446298 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 108446298 108446298 UBE3B 12 A A T 8 SLC7A8 23428 broad.mit.edu 36 14 22679626 22679626 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 22679626 22679626 SLC7A8 14 C C T 30 KCNH5 27133 broad.mit.edu 36 14 62553362 62553362 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62553362 62553362 KCNH5 14 C C A 18 DYNC1H1 1778 broad.mit.edu 36 14 101558972 101558972 + Splice_Site_SNP SNP T T A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 101558972 101558972 DYNC1H1 14 T T A 57 ACSBG1 23205 broad.mit.edu 36 15 76258093 76258093 + Silent SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 76258093 76258093 ACSBG1 15 G G A 37 NLRC3 197358 broad.mit.edu 36 16 3538161 3538161 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3538161 3538161 NLRC3 16 G G C 34 ALG1 56052 broad.mit.edu 36 16 5071002 5071002 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5071002 5071002 ALG1 16 A A G 7 KIAA0556 23247 broad.mit.edu 36 16 27695791 27695791 + Silent SNP G G T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 27695791 27695791 KIAA0556 16 G G T 48 SLC6A2 6530 broad.mit.edu 36 16 54293276 54293276 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54293276 54293276 SLC6A2 16 A A G 11 ANKFY1 51479 broad.mit.edu 36 17 4023399 4023399 + Silent SNP T T G novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 4023399 4023399 ANKFY1 17 T T G 55 TP53 7157 broad.mit.edu 36 17 7519259 7519259 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7519259 7519259 TP53 17 C C A 32 TOP3A 7156 broad.mit.edu 36 17 18129514 18129514 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18129514 18129514 TOP3A 17 C C T 23 DHRS13 147015 broad.mit.edu 36 17 24249857 24249857 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 24249857 24249857 DHRS13 17 C C T 30 KRT17 3872 broad.mit.edu 36 17 37033993 37033993 + Silent SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 37033993 37033993 KRT17 17 G G A 35 WFIKKN2 124857 broad.mit.edu 36 17 46272992 46272992 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 46272992 46272992 WFIKKN2 17 C C A 25 TMEM105 284186 broad.mit.edu 36 17 76902259 76902259 + Silent SNP G G T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 76902259 76902259 TMEM105 17 G G T 43 LAMA1 284217 broad.mit.edu 36 18 7003922 7003922 + Silent SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 7003922 7003922 LAMA1 18 G G A 39 ZNF521 25925 broad.mit.edu 36 18 21059702 21059702 + Silent SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 21059702 21059702 ZNF521 18 G G A 33 HNRNPM 4670 broad.mit.edu 36 19 8456730 8456731 + Missense_Mutation DNP GC GC TT novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 8456730 8456731 HNRNPM 19 GC GC TT 42 ZNF564 163050 broad.mit.edu 36 19 12499453 12499453 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 12499453 12499453 ZNF564 19 G G A 37 FKBP8 23770 broad.mit.edu 36 19 18503978 18503979 + Nonstop_Mutation DNP GT GT CG novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Nonstop_Mutation DNP 18503978 18503979 FKBP8 19 GT GT CG 44 ZFP14 57677 broad.mit.edu 36 19 41524133 41524133 + Silent SNP A A G novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 41524133 41524133 ZFP14 19 A A G 13 GRIK5 2901 broad.mit.edu 36 19 47261274 47261274 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47261274 47261274 GRIK5 19 C C T 31 TPRX1 284355 broad.mit.edu 36 19 52997077 52997078 + Missense_Mutation DNP GC GC AA novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 52997077 52997078 TPRX1 19 GC GC AA 42 SHANK1 50944 broad.mit.edu 36 19 55867168 55867168 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55867168 55867168 SHANK1 19 G G A 47 C19orf51 352909 broad.mit.edu 36 19 60369533 60369533 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 60369533 60369533 C19orf51 19 G G A 43 LRPPRC 10128 broad.mit.edu 36 2 44024521 44024521 + Silent SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 44024521 44024521 LRPPRC 2 C C T 29 RPS27A 6233 broad.mit.edu 36 2 55315594 55315594 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55315594 55315594 RPS27A 2 T T C 49 LOXL3 84695 broad.mit.edu 36 2 74617073 74617073 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74617073 74617073 LOXL3 2 C C G 21 C20orf117 140710 broad.mit.edu 36 20 34877701 34877701 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34877701 34877701 C20orf117 20 C C T 31 TOP1 7150 broad.mit.edu 36 20 39174944 39174944 + Silent SNP C C A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 39174944 39174944 TOP1 20 C C A 23 ZNF335 63925 broad.mit.edu 36 20 44025810 44025810 + Silent SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 44025810 44025810 ZNF335 20 C C T 26 ATP9A 10079 broad.mit.edu 36 20 49667453 49667453 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49667453 49667453 ATP9A 20 C C T 19 GAS2L1 10634 broad.mit.edu 36 22 28037990 28037990 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 28037990 28037990 GAS2L1 22 T T A 55 SBF1 6305 broad.mit.edu 36 22 49247919 49247919 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49247919 49247919 SBF1 22 C C A 21 ATP2B2 491 broad.mit.edu 36 3 10466191 10466191 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10466191 10466191 ATP2B2 3 T T C 64 SKIL 6498 broad.mit.edu 36 3 171592745 171592745 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 171592745 171592745 SKIL 3 C C T 25 DCUN1D1 54165 broad.mit.edu 36 3 184164362 184164362 + Splice_Site_SNP SNP C C A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 184164362 184164362 DCUN1D1 3 C C A 18 GPR78 27201 broad.mit.edu 36 4 8635192 8635192 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8635192 8635192 GPR78 4 C C T 27 CEP135 9662 broad.mit.edu 36 4 56560533 56560533 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56560533 56560533 CEP135 4 A A G 1 SMR3A 26952 broad.mit.edu 36 4 71262466 71262466 + Silent SNP G G C rs62322478 by1000genomes TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 71262466 71262466 SMR3A 4 G G C 40 SDAD1 55153 broad.mit.edu 36 4 77111541 77111541 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 77111541 77111541 SDAD1 4 A A G 6 LPCAT1 79888 broad.mit.edu 36 5 1547896 1547896 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1547896 1547896 LPCAT1 5 A A C 15 PCDHB11 56125 broad.mit.edu 36 5 140561196 140561196 + Silent SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 140561196 140561196 PCDHB11 5 C C T 19 HIVEP1 3096 broad.mit.edu 36 6 12232945 12232945 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12232945 12232945 HIVEP1 6 T T A 60 DCDC2 51473 broad.mit.edu 36 6 24465686 24465686 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 24465686 24465686 DCDC2 6 T T C 55 OR5V1 81696 broad.mit.edu 36 6 29431065 29431065 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29431065 29431065 OR5V1 6 T T C 58 C6orf222 389384 broad.mit.edu 36 6 36399072 36399072 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36399072 36399072 C6orf222 6 G G A 37 DAAM2 23500 broad.mit.edu 36 6 39954010 39954010 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39954010 39954010 DAAM2 6 G G A 39 TJAP1 93643 broad.mit.edu 36 6 43579116 43579116 + Splice_Site_SNP SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 43579116 43579116 TJAP1 6 G G A 33 DNAH11 8701 broad.mit.edu 36 7 21879437 21879437 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21879437 21879437 DNAH11 7 G G C 36 AUTS2 26053 broad.mit.edu 36 7 69874524 69874524 + Silent SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 69874524 69874524 AUTS2 7 C C T 21 VPS37D 155382 broad.mit.edu 36 7 72723373 72723374 + Missense_Mutation DNP AC AC TT novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 72723373 72723374 VPS37D 7 AC AC TT 10 COL1A2 1278 broad.mit.edu 36 7 93890328 93890328 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 93890328 93890328 COL1A2 7 G G A 38 TMEM168 64418 broad.mit.edu 36 7 112194929 112194929 + Silent SNP A A C novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 112194929 112194929 TMEM168 7 A A C 3 RP1L1 94137 broad.mit.edu 36 8 10504154 10504154 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10504154 10504154 RP1L1 8 G G A 38 INTS10 55174 broad.mit.edu 36 8 19735055 19735055 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19735055 19735055 INTS10 8 G G T 34 SULF1 23213 broad.mit.edu 36 8 70702641 70702641 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70702641 70702641 SULF1 8 C C A 28 PDP1 54704 broad.mit.edu 36 8 95005016 95005016 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 95005016 95005016 PDP1 8 T T G 52 FER1L6 654463 broad.mit.edu 36 8 125184694 125184694 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 125184694 125184694 FER1L6 8 G G A 40 NEK6 10783 broad.mit.edu 36 9 126149888 126149888 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 126149888 126149888 NEK6 9 A A G 14 NUP214 8021 broad.mit.edu 36 9 133098694 133098694 + Silent SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 133098694 133098694 NUP214 9 G G A 45 REPS2 9185 broad.mit.edu 36 X 17063308 17063308 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 17063308 17063308 REPS2 23 G G T 48 ZXDB 158586 broad.mit.edu 36 X 57636999 57636999 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 57636999 57636999 ZXDB 23 G G C 33 RBM41 55285 broad.mit.edu 36 X 106199163 106199163 + Silent SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 106199163 106199163 RBM41 23 G G A 42 BCORL1 63035 broad.mit.edu 36 X 129013584 129013584 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 129013584 129013584 BCORL1 23 G G A 37 SLITRK2 84631 broad.mit.edu 36 X 144711699 144711699 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2262-01 TCGA-24-2262-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 144711699 144711699 SLITRK2 23 C C T 31