Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context PROKR2 128674 genome.wustl.edu 36 20 5230949 5230949 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 5230949 5230949 PROKR2 20 G G A 37 TP53 7157 genome.wustl.edu 36 17 7520317 7520317 + Splice_Site_SNP SNP T T A novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 7520317 7520317 TP53 17 T T A 55 PLCB4 5332 genome.wustl.edu 36 20 9236464 9236464 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9236464 9236464 PLCB4 20 G G A 47 ENSG00000111788 0 genome.wustl.edu 36 12 9351076 9351076 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9351076 9351076 ENSG00000111788 12 G G C 45 OVOS 408186 genome.wustl.edu 36 12 9604705 9604705 + Silent SNP T T C novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 9604705 9604705 OVOS 12 T T C 52 ESF1 51575 genome.wustl.edu 36 20 13701204 13701204 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 13701204 13701204 ESF1 20 C C T 20 ENSG00000215561 0 genome.wustl.edu 36 21 14228174 14228174 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14228174 14228174 ENSG00000215561 21 C C A 32 PTPRO 5800 genome.wustl.edu 36 12 15552818 15552818 + Silent SNP C C T novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 15552818 15552818 PTPRO 12 C C T 19 RSC1A1 6248 genome.wustl.edu 36 1 15859164 15859164 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15859164 15859164 RSC1A1 1 C C G 32 LOC646057 genome.wustl.edu 36 15 18452955 18452955 + Silent SNP G G A novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 18452955 18452955 LOC646057 15 G G A 39 CHEK2 11200 genome.wustl.edu 36 22 27422947 27422947 + Missense_Mutation SNP C T T novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27422947 27422947 CHEK2 22 C T T 19 ZNF267 10308 genome.wustl.edu 36 16 31834750 31834750 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31834750 31834750 ZNF267 16 G G C 36 FHOD3 80206 genome.wustl.edu 36 18 32445993 32445993 + Silent SNP C A A novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C A A A A Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 32445993 32445993 FHOD3 18 C A A 22 CUL7 9820 genome.wustl.edu 36 6 43127973 43127973 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43127973 43127973 CUL7 6 G G A 37 PSMC3 5702 genome.wustl.edu 36 11 47398461 47398461 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 47398461 47398461 PSMC3 11 C C A 32 VEZF1 7716 genome.wustl.edu 36 17 53411654 53411654 + Silent SNP G G A novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 53411654 53411654 VEZF1 17 G G A 47 ALPK2 115701 genome.wustl.edu 36 18 54355093 54355093 + Silent SNP C C T novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 54355093 54355093 ALPK2 18 C C T 24 ZNF716 441234 genome.wustl.edu 36 7 57532718 57532718 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 57532718 57532718 ZNF716 7 T T G 50 UBXN2B 137886 genome.wustl.edu 36 8 59514807 59514807 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59514807 59514807 UBXN2B 8 G G A 41 IPMK 253430 genome.wustl.edu 36 10 59656818 59656818 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59656818 59656818 IPMK 10 G G A 46 KIR2DL3 3804 genome.wustl.edu 36 19 59955724 59955724 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59955724 59955724 KIR2DL3 19 C C T 26 NT5E 4907 genome.wustl.edu 36 6 86253849 86253849 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 86253849 86253849 NT5E 6 A A G 4 DCN 1634 genome.wustl.edu 36 12 90082549 90082549 + Silent SNP G G T novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 90082549 90082549 DCN 12 G G T 45 SERPINA5 5104 genome.wustl.edu 36 14 94128255 94128255 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 94128255 94128255 SERPINA5 14 G G A 36 DPY19L4 286148 genome.wustl.edu 36 8 95861770 95861770 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 95861770 95861770 DPY19L4 8 T T A 52 MUM1L1 139221 genome.wustl.edu 36 X 105337677 105337677 + Silent SNP C C G novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 105337677 105337677 MUM1L1 23 C C G 21 ABHD13 84945 genome.wustl.edu 36 13 107679821 107679821 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 107679821 107679821 ABHD13 13 C C T 21 PKNOX2 63876 genome.wustl.edu 36 11 124743010 124743010 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124743010 124743010 PKNOX2 11 C C T 29 SYCE1 93426 genome.wustl.edu 36 10 135219524 135219524 + Silent SNP T T A novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 135219524 135219524 SYCE1 10 T T A 63 KLHL24 54800 genome.wustl.edu 36 3 184851541 184851541 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 184851541 184851541 KLHL24 3 C C T 27 FAT1 2195 genome.wustl.edu 36 4 187777869 187777869 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 187777869 187777869 FAT1 4 C C T 25 NF1 4763 genome.wustl.edu 36 17 26687915 26687916 + Frame_Shift_Ins INS - - T novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 26687915 26687916 NF1 17 - - T 12 BRCA2 675 genome.wustl.edu 36 13 31870626 31870626 + Nonsense_Mutation SNP A A T rs11571833 byCluster TCGA-24-1562-01 TCGA-24-1562-10 A T A T A T Unknown Valid Germline Phase_III Capture 454_PCR_WGA;Sanger_PCR_WGA dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 31870626 31870626 BRCA2 13 A A T 13 XPO6 23214 genome.wustl.edu 36 16 28030740 28030740 + Missense_Mutation SNP C C T Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 28030740 28030740 XPO6 16 C C T 27 TMEM43 79188 genome.wustl.edu 36 3 14158264 14158264 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1562-01 TCGA-24-1562-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14158264 14158264 TMEM43 3 C C T 31 TNPO2 30000 genome.wustl.edu 36 19 12675323 12675323 + Missense_Mutation SNP G G C Unknown TCGA-24-1562-01 TCGA-24-1562-10 G G G C G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 12675323 12675323 TNPO2 19 G G C 33