Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context FLG 2312 broad.mit.edu 36 1 150549287 150549287 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150549287 150549287 FLG 1 G G A 37 FLG 2312 broad.mit.edu 36 1 150554440 150554440 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150554440 150554440 FLG 1 C C A 24 RGS7 6000 broad.mit.edu 36 1 239043642 239043642 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 239043642 239043642 RGS7 1 A A T 2 PLXDC2 84898 broad.mit.edu 36 10 20330856 20330856 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 20330856 20330856 PLXDC2 10 C C A 30 SYT8 90019 broad.mit.edu 36 11 1815036 1815036 + Silent SNP G G T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 1815036 1815036 SYT8 11 G G T 46 ACCSL 390110 broad.mit.edu 36 11 44026460 44026460 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44026460 44026460 ACCSL 11 G G A 41 DGKZ 8525 broad.mit.edu 36 11 46344423 46344423 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 46344423 46344423 DGKZ 11 C C T 21 PACS1 55690 broad.mit.edu 36 11 65757079 65757079 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 65757079 65757079 PACS1 11 G G A 40 ANO1 55107 broad.mit.edu 36 11 69706267 69706267 + Silent SNP C C A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 69706267 69706267 ANO1 11 C C A 32 KRTAP5-7 440050 broad.mit.edu 36 11 70916252 70916252 + Silent SNP C C T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 70916252 70916252 KRTAP5-7 11 C C T 28 GDPD5 81544 broad.mit.edu 36 11 74837673 74837673 + Silent SNP G G C novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 74837673 74837673 GDPD5 11 G G C 47 C11orf82 220042 broad.mit.edu 36 11 82303441 82303441 + Nonsense_Mutation SNP C C T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 82303441 82303441 C11orf82 11 C C T 19 EXPH5 23086 broad.mit.edu 36 11 107887170 107887170 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 107887170 107887170 EXPH5 11 G G A 33 ATP5G2 517 broad.mit.edu 36 12 52345445 52345445 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52345445 52345445 ATP5G2 12 C C T 27 CRY1 1407 broad.mit.edu 36 12 105919271 105919271 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 105919271 105919271 CRY1 12 C C T 29 DNAH10 196385 broad.mit.edu 36 12 122849786 122849786 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 122849786 122849786 DNAH10 12 A A G 11 GPR133 283383 broad.mit.edu 36 12 130032443 130032443 + Silent SNP G G A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 130032443 130032443 GPR133 12 G G A 40 DDX51 317781 broad.mit.edu 36 12 131193236 131193236 + Silent SNP G G T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 131193236 131193236 DDX51 12 G G T 35 ZNF605 100289635 broad.mit.edu 36 12 132013728 132013728 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 132013728 132013728 ZNF605 12 T T C 64 RNF17 56163 broad.mit.edu 36 13 24272504 24272504 + Silent SNP A A T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 24272504 24272504 RNF17 13 A A T 11 PCDH9 5101 broad.mit.edu 36 13 66103410 66103410 + Silent SNP G G A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 66103410 66103410 PCDH9 13 G G A 40 DOCK9 23348 broad.mit.edu 36 13 98250647 98250647 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 98250647 98250647 DOCK9 13 C C G 29 OR4K13 390433 broad.mit.edu 36 14 19572157 19572157 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19572157 19572157 OR4K13 14 C C A 25 PAK6 56924 broad.mit.edu 36 15 38344471 38344471 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38344471 38344471 PAK6 15 C C A 21 IL4R 3566 broad.mit.edu 36 16 27282455 27282455 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27282455 27282455 IL4R 16 G G A 42 MVP 9961 broad.mit.edu 36 16 29760656 29760656 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29760656 29760656 MVP 16 G G A 37 GAS8 2622 broad.mit.edu 36 16 88631217 88631217 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 88631217 88631217 GAS8 16 G G T 38 DNM2 1785 broad.mit.edu 36 19 10758342 10758342 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 10758342 10758342 DNM2 19 C C T 31 KCNN1 3780 broad.mit.edu 36 19 17946960 17946960 + Silent SNP G G T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 17946960 17946960 KCNN1 19 G G T 47 PSG1 5669 broad.mit.edu 36 19 48067936 48067936 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 A T A A Unknown Valid Somatic x x 454_PCR_WGA x Broad Missense_Mutation SNP 48067936 48067936 PSG1 19 A A T 15 MITD1 129531 broad.mit.edu 36 2 99152488 99152488 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 99152488 99152488 MITD1 2 A A G 8 TTN 7273 broad.mit.edu 36 2 179320284 179320284 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 T G T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 179320284 179320284 TTN 2 T T G 59 DOCK3 1795 broad.mit.edu 36 3 51375143 51375143 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 51375143 51375143 DOCK3 3 G G A 37 CCDC52 152185 broad.mit.edu 36 3 114670383 114670383 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 114670383 114670383 CCDC52 3 C C T 29 SIDT1 54847 broad.mit.edu 36 3 114809700 114809700 + Silent SNP G G A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 114809700 114809700 SIDT1 3 G G A 46 ZNF80 7634 broad.mit.edu 36 3 115438209 115438209 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 115438209 115438209 ZNF80 3 A A C 6 CD86 942 broad.mit.edu 36 3 123307737 123307737 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 A C A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 123307737 123307737 CD86 3 A A C 13 KIAA1109 84162 broad.mit.edu 36 4 123387334 123387334 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 123387334 123387334 KIAA1109 4 C C T 19 TAS2R1 50834 broad.mit.edu 36 5 9682601 9682601 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 9682601 9682601 TAS2R1 5 C C A 29 C5orf33 133686 broad.mit.edu 36 5 36233495 36233495 + Silent SNP G G A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 36233495 36233495 C5orf33 5 G G A 33 PCDHB4 56131 broad.mit.edu 36 5 140483358 140483358 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140483358 140483358 PCDHB4 5 G G A 38 CPLX2 10814 broad.mit.edu 36 5 175239564 175239564 + Silent SNP C C T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 175239564 175239564 CPLX2 5 C C T 27 TAP2 6891 broad.mit.edu 36 6 32911441 32911441 + Silent SNP G G T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 G T G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 32911441 32911441 TAP2 6 G G T 43 TTBK1 84630 broad.mit.edu 36 6 43359650 43359650 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43359650 43359650 TTBK1 6 C C G 19 EPHA7 2045 broad.mit.edu 36 6 94177155 94177155 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 94177155 94177155 EPHA7 6 C C A 21 KIAA0415 9907 broad.mit.edu 36 7 4789544 4789544 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4789544 4789544 KIAA0415 7 G G C 35 ZAN 7455 broad.mit.edu 36 7 100202212 100202212 + Silent SNP C C T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 100202212 100202212 ZAN 7 C C T 28 MLL5 55904 broad.mit.edu 36 7 104540210 104540210 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 C G C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 104540210 104540210 MLL5 7 C C G 30 PRAGMIN 157285 broad.mit.edu 36 8 8272214 8272214 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8272214 8272214 PRAGMIN 8 G G A 47 ZNF169 169841 broad.mit.edu 36 9 96102301 96102301 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 96102301 96102301 ZNF169 9 C C T 19 TP53 7157 broad.mit.edu 36 17 7514720 7514720 + Frame_Shift_Del DEL C C - novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 7514720 7514720 TP53 17 C C - 29 KDM5C 8242 broad.mit.edu 36 X 53256378 53256379 + Frame_Shift_Ins INS - A - novel Unknown TCGA-24-1434-01 TCGA-24-1434-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 53256378 53256379 KDM5C 23 - A - 41