Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context TCEB3 6924 broad.mit.edu 36 1 23950097 23950097 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23950097 23950097 TCEB3 1 C C A 28 ECM1 1893 broad.mit.edu 36 1 148750178 148750178 + Silent SNP A A G novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 148750178 148750178 ECM1 1 A A G 6 HRNR 388697 broad.mit.edu 36 1 150459028 150459028 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150459028 150459028 HRNR 1 C C A 18 SMG5 23381 broad.mit.edu 36 1 154496995 154496995 + Silent SNP T T C novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 154496995 154496995 SMG5 1 T T C 60 ATP1B1 481 broad.mit.edu 36 1 167347334 167347334 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 167347334 167347334 ATP1B1 1 C C T 17 MTR 4548 broad.mit.edu 36 1 235082450 235082450 + Silent SNP T T C novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 235082450 235082450 MTR 1 T T C 52 DNA2 1763 broad.mit.edu 36 10 69888979 69888979 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69888979 69888979 DNA2 10 G G C 45 TACR2 6865 broad.mit.edu 36 10 70836952 70836952 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70836952 70836952 TACR2 10 C C A 30 SH3PXD2A 9644 broad.mit.edu 36 10 105352548 105352548 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 105352548 105352548 SH3PXD2A 10 G G A 40 OR56A1 120796 broad.mit.edu 36 11 6005489 6005489 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6005489 6005489 OR56A1 11 G G T 44 LGR4 55366 broad.mit.edu 36 11 27346024 27346024 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27346024 27346024 LGR4 11 C C A 27 FAT3 120114 broad.mit.edu 36 11 92134777 92134777 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 92134777 92134777 FAT3 11 C C A 18 PRB4 5545 broad.mit.edu 36 12 11352549 11352549 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11352549 11352549 PRB4 12 T T A 52 KCNC2 3747 broad.mit.edu 36 12 73887921 73887921 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73887921 73887921 KCNC2 12 A A G 3 MLNR 2862 broad.mit.edu 36 13 48693313 48693313 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48693313 48693313 MLNR 13 C C T 23 EML5 161436 broad.mit.edu 36 14 88199128 88199128 + Silent SNP C C T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 88199128 88199128 EML5 14 C C T 24 BDKRB1 623 broad.mit.edu 36 14 95800521 95800521 + Missense_Mutation SNP C C T rs2229459 byHapMap TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 95800521 95800521 BDKRB1 14 C C T 27 TLN2 83660 broad.mit.edu 36 15 60912774 60912774 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 60912774 60912774 TLN2 15 G G A 41 MAN2A2 4122 broad.mit.edu 36 15 89255192 89255192 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 89255192 89255192 MAN2A2 15 A A C 3 ZNF213 7760 broad.mit.edu 36 16 3130723 3130723 + Silent SNP C C T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 3130723 3130723 ZNF213 16 C C T 24 PRSS54 221191 broad.mit.edu 36 16 56885181 56885181 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56885181 56885181 PRSS54 16 C C T 31 NEURL4 84461 broad.mit.edu 36 17 7170587 7170587 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7170587 7170587 NEURL4 17 C C T 19 C17orf39 79018 broad.mit.edu 36 17 17902999 17902999 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 17902999 17902999 C17orf39 17 G G A 45 FKBP10 60681 broad.mit.edu 36 17 37230150 37230150 + Silent SNP T T G novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 37230150 37230150 FKBP10 17 T T G 55 MAP3K14 9020 broad.mit.edu 36 17 40704246 40704248 + Missense_Mutation TNP GGT GGT TTG novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation TNP 40704246 40704248 MAP3K14 17 GGT GGT TTG 43 TANC2 26115 broad.mit.edu 36 17 58849500 58849500 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 58849500 58849500 TANC2 17 G G A 35 HMHA1 23526 broad.mit.edu 36 19 1030997 1030997 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1030997 1030997 HMHA1 19 G G C 48 ZNF121 7675 broad.mit.edu 36 19 9538501 9538501 + Silent SNP G G C novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 9538501 9538501 ZNF121 19 G G C 35 CILP2 148113 broad.mit.edu 36 19 19514197 19514197 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19514197 19514197 CILP2 19 C C G 17 RTN2 6253 broad.mit.edu 36 19 50684556 50684556 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50684556 50684556 RTN2 19 C C T 19 DACT3 147906 broad.mit.edu 36 19 51843780 51843780 + Silent SNP G G T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 51843780 51843780 DACT3 19 G G T 35 ZC3H4 23211 broad.mit.edu 36 19 52261899 52261899 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52261899 52261899 ZC3H4 19 C C T 27 TRIM54 57159 broad.mit.edu 36 2 27374970 27374970 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27374970 27374970 TRIM54 2 C C G 30 EPAS1 2034 broad.mit.edu 36 2 46436791 46436792 + Splice_Site_SNP DNP CA CA AT novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP DNP 46436791 46436792 EPAS1 2 CA CA AT 21 USP34 9736 broad.mit.edu 36 2 61289609 61289609 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 61289609 61289609 USP34 2 T T C 55 LRRTM1 347730 broad.mit.edu 36 2 80382909 80382909 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 80382909 80382909 LRRTM1 2 G G T 43 ANKZF1 55139 broad.mit.edu 36 2 219808085 219808085 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 219808085 219808085 ANKZF1 2 G G C 46 BPI 671 broad.mit.edu 36 20 36389418 36389418 + Silent SNP C C T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 36389418 36389418 BPI 20 C C T 21 RBPJL 11317 broad.mit.edu 36 20 43378933 43378933 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43378933 43378933 RBPJL 20 G G A 38 TXNRD2 10587 broad.mit.edu 36 22 18282746 18282746 + Nonsense_Mutation SNP G G C novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 18282746 18282746 TXNRD2 22 G G C 44 AIFM3 150209 broad.mit.edu 36 22 19659035 19659035 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19659035 19659035 AIFM3 22 G G T 42 SSTR3 6753 broad.mit.edu 36 22 35933009 35933009 + Silent SNP C C A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 35933009 35933009 SSTR3 22 C C A 21 PPP6R2 9701 broad.mit.edu 36 22 49216601 49216601 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49216601 49216601 PPP6R2 22 C C T 23 CHRD 8646 broad.mit.edu 36 3 185585115 185585115 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 185585115 185585115 CHRD 3 G G A 39 HTR1A 3350 broad.mit.edu 36 5 63293124 63293124 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 63293124 63293124 HTR1A 5 G G A 42 IQGAP2 10788 broad.mit.edu 36 5 76015371 76015371 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 76015371 76015371 IQGAP2 5 G G A 45 CD83 9308 broad.mit.edu 36 6 14239789 14239789 + Silent SNP G G A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 14239789 14239789 CD83 6 G G A 34 SFRS18 25957 broad.mit.edu 36 6 99962842 99962842 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 99962842 99962842 SFRS18 6 C C T 27 TMEM181 57583 broad.mit.edu 36 6 158914445 158914445 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 158914445 158914445 TMEM181 6 C C T 27 STEAP2 261729 broad.mit.edu 36 7 89692768 89692768 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 89692768 89692768 STEAP2 7 T T C 52 PTDSS1 9791 broad.mit.edu 36 8 97411676 97411676 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 97411676 97411676 PTDSS1 8 C C A 18 EHMT1 79813 broad.mit.edu 36 9 139791040 139791040 + Silent SNP C C T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 139791040 139791040 EHMT1 9 C C T 21 RAB9A 9367 broad.mit.edu 36 X 13637199 13637199 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13637199 13637199 RAB9A 23 C C T 26 ACOT9 23597 broad.mit.edu 36 X 23633874 23633874 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23633874 23633874 ACOT9 23 C C A 20 IQSEC2 23096 broad.mit.edu 36 X 53296272 53296272 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1431-01 TCGA-24-1431-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53296272 53296272 IQSEC2 23 C C A 32