Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context ZDHHC11B 653082 genome.wustl.edu 36 5 783566 783566 + Silent SNP C C G novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 783566 783566 ZDHHC11B 5 C C G 31 MUC5B 727897 genome.wustl.edu 36 11 1220871 1220871 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1220871 1220871 MUC5B 11 C C T 18 OR1A1 8383 genome.wustl.edu 36 17 3065967 3065967 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3065967 3065967 OR1A1 17 G G A 48 NDUFA9 4704 genome.wustl.edu 36 12 4633733 4633733 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 4633733 4633733 NDUFA9 12 G G T 46 OR52A1 23538 genome.wustl.edu 36 11 5129570 5129570 + Silent SNP A A G novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 A A A G A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 5129570 5129570 OR52A1 11 A A G 2 ADCY2 108 genome.wustl.edu 36 5 7855364 7855364 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7855364 7855364 ADCY2 5 G G A 40 POTED 317754 genome.wustl.edu 36 21 13914436 13914436 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 13914436 13914436 POTED 21 A A G 12 LSM3 27258 genome.wustl.edu 36 3 14214608 14214608 + Silent SNP G G T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 14214608 14214608 LSM3 3 G G T 45 CXADR 1525 genome.wustl.edu 36 21 17846071 17846071 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17846071 17846071 CXADR 21 T T A 52 SLCO1B1 10599 genome.wustl.edu 36 12 21185846 21185846 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21185846 21185846 SLCO1B1 12 G G T 46 KIAA0100 9703 genome.wustl.edu 36 17 23990758 23990758 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 23990758 23990758 KIAA0100 17 G G A 40 PLB1 151056 genome.wustl.edu 36 2 28697349 28697349 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 28697349 28697349 PLB1 2 G G T 35 ALK 238 genome.wustl.edu 36 2 29794060 29794060 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29794060 29794060 ALK 2 G G T 34 SKIV2L 6499 genome.wustl.edu 36 6 32039837 32039837 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32039837 32039837 SKIV2L 6 C C T 27 CLASP2 23122 genome.wustl.edu 36 3 33589669 33589669 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33589669 33589669 CLASP2 3 C C A 21 TRIOBP 11078 genome.wustl.edu 36 22 36451629 36451629 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36451629 36451629 TRIOBP 22 C C A 32 SETD2 29072 genome.wustl.edu 36 3 47138183 47138183 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 47138183 47138183 SETD2 3 C C A 29 CCDC71 64925 genome.wustl.edu 36 3 49175752 49175752 + Silent SNP C C T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 49175752 49175752 CCDC71 3 C C T 24 NRXN1 9378 genome.wustl.edu 36 2 50578090 50578090 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50578090 50578090 NRXN1 2 G G T 46 PARS2 25973 genome.wustl.edu 36 1 54996168 54996168 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 54996168 54996168 PARS2 1 C C A 23 BAZ2A 11176 genome.wustl.edu 36 12 55295117 55295117 + Silent SNP T T C novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 55295117 55295117 BAZ2A 12 T T C 55 KDR 3791 genome.wustl.edu 36 4 55675918 55675918 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55675918 55675918 KDR 4 C C T 30 SIGLEC8 27181 genome.wustl.edu 36 19 56647504 56647504 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56647504 56647504 SIGLEC8 19 C C A 25 SYCP2 10388 genome.wustl.edu 36 20 57888752 57888752 + Splice_Site_SNP SNP C C T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 57888752 57888752 SYCP2 20 C C T 20 MARK2 2011 genome.wustl.edu 36 11 63423980 63423980 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 63423980 63423980 MARK2 11 G G A 34 BMP10 27302 genome.wustl.edu 36 2 68947020 68947020 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 68947020 68947020 BMP10 2 T T A 56 SEC14L1 6397 genome.wustl.edu 36 17 72719626 72719627 + Missense DNP GA GA TT novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 GA GA GA TT GA GA Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 72719626 72719627 SEC14L1 17 GA GA TT 33 LOC339879 339879 genome.wustl.edu 36 3 75551714 75551714 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 75551714 75551714 LOC339879 3 A A G 10 LRRTM1 347730 genome.wustl.edu 36 2 80383130 80383130 + Silent SNP C C A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 80383130 80383130 LRRTM1 2 C C A 21 GPRIN3 285513 genome.wustl.edu 36 4 90388767 90388767 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 90388767 90388767 GPRIN3 4 G G T 44 SLC26A7 115111 genome.wustl.edu 36 8 92419638 92419638 + Splice_Site_SNP SNP T T G novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 92419638 92419638 SLC26A7 8 T T G 57 CYP2C19 1557 genome.wustl.edu 36 10 96525277 96525277 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 96525277 96525277 CYP2C19 10 A A C 1 RG9MTD2 93587 genome.wustl.edu 36 4 100698372 100698372 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100698372 100698372 RG9MTD2 4 G G A 40 ERCC5 2073 genome.wustl.edu 36 13 102308654 102308654 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 102308654 102308654 ERCC5 13 T T C 49 MFSD9 84804 genome.wustl.edu 36 2 102701900 102701900 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 102701900 102701900 MFSD9 2 T T A 60 FEM1C 56929 genome.wustl.edu 36 5 114906776 114906776 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 114906776 114906776 FEM1C 5 T T C 51 DFNB31 25861 genome.wustl.edu 36 9 116268469 116268469 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 116268469 116268469 DFNB31 9 G G A 39 POLQ 10721 genome.wustl.edu 36 3 122669852 122669852 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 122669852 122669852 POLQ 3 G G A 41 HAS2 3037 genome.wustl.edu 36 8 122710164 122710164 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 122710164 122710164 HAS2 8 C C T 28 MYLK 4638 genome.wustl.edu 36 3 124831014 124831014 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124831014 124831014 MYLK 3 A A G 8 TRMT11 60487 genome.wustl.edu 36 6 126358864 126358864 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 126358864 126358864 TRMT11 6 G G T 39 BIN1 274 genome.wustl.edu 36 2 127544044 127544044 + Silent SNP G G T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 127544044 127544044 BIN1 2 G G T 45 TRPC1 7220 genome.wustl.edu 36 3 144005548 144005548 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 144005548 144005548 TRPC1 3 C C A 32 FBXO30 84085 genome.wustl.edu 36 6 146168968 146168968 + Silent SNP G G A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 146168968 146168968 FBXO30 6 G G A 34 THEM5 284486 genome.wustl.edu 36 1 150090247 150090247 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 150090247 150090247 THEM5 1 C C A 24 NES 10763 genome.wustl.edu 36 1 154907174 154907174 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 154907174 154907174 NES 1 G G T 35 OR10K1 391109 genome.wustl.edu 36 1 156702418 156702418 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 156702418 156702418 OR10K1 1 C C A 26 TNIK 23043 genome.wustl.edu 36 3 172302058 172302058 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 172302058 172302058 TNIK 3 G G C 47 CHRNA1 1134 genome.wustl.edu 36 2 175326448 175326448 + Nonsense_Mutation SNP G G T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G T G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 175326448 175326448 CHRNA1 2 G G T 34 TTN 7273 genome.wustl.edu 36 2 179144336 179144336 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179144336 179144336 TTN 2 G G T 48 SDPR 8436 genome.wustl.edu 36 2 192419516 192419516 + Silent SNP C C T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 192419516 192419516 SDPR 2 C C T 23 ZDHHC19 131540 genome.wustl.edu 36 3 197422475 197422475 + Silent SNP G G A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 197422475 197422475 ZDHHC19 3 G G A 34 SATB2 23314 genome.wustl.edu 36 2 199845581 199845581 + Silent SNP C C T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 199845581 199845581 SATB2 2 C C T 27 SYT2 127833 genome.wustl.edu 36 1 200835041 200835041 + Silent SNP G G T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 200835041 200835041 SYT2 1 G G T 39 LGALS8 3964 genome.wustl.edu 36 1 234767484 234767484 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 234767484 234767484 LGALS8 1 G G A 43 RYR2 6262 genome.wustl.edu 36 1 235844061 235844061 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 235844061 235844061 RYR2 1 C C G 18 TP53 7157 genome.wustl.edu 36 17 7517849 7517849 + Frame_Shift_Del DEL C C - novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 C C C - C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 7517849 7517849 TP53 17 C C - 18 APLP2 334 genome.wustl.edu 36 11 129515549 129515549 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 129515549 129515549 APLP2 11 G G T 33 RBBP6 5930 genome.wustl.edu 36 16 24467772 24467772 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 24467772 24467772 RBBP6 16 G G A 37 MYH15 22989 genome.wustl.edu 36 3 109688056 109688056 + Silent SNP G G C Unknown TCGA-24-1427-01 TCGA-24-1427-10 G G G C G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 109688056 109688056 MYH15 3 G G C 41