Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context FAM193A 8603 genome.wustl.edu 36 4 2631482 2631482 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2631482 2631482 FAM193A 4 G G A 48 SFMBT2 57713 genome.wustl.edu 36 10 7279543 7279543 + Silent SNP C C G novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 7279543 7279543 SFMBT2 10 C C G 23 TP53 7157 genome.wustl.edu 36 17 7518990 7518990 + Missense_Mutation SNP A G G novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 A A G G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7518990 7518990 TP53 17 A G G 12 KIN 22944 genome.wustl.edu 36 10 7862042 7862042 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7862042 7862042 KIN 10 T T C 56 SLC7A2 6542 genome.wustl.edu 36 8 17452228 17452228 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17452228 17452228 SLC7A2 8 G G C 47 MIB1 57534 genome.wustl.edu 36 18 17683210 17683210 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17683210 17683210 MIB1 18 G G C 33 LOC100128765 genome.wustl.edu 36 13 18601176 18601176 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18601176 18601176 LOC100128765 13 G G T 44 POTEB 339010 genome.wustl.edu 36 15 19335877 19335877 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19335877 19335877 POTEB 15 T T G 63 OR4M2 390538 genome.wustl.edu 36 15 19870123 19870123 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19870123 19870123 OR4M2 15 C C A 24 IGL@ 0 genome.wustl.edu 36 22 21385635 21385635 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21385635 21385635 IGL@ 22 G G C 41 CHRNA7 1139 genome.wustl.edu 36 15 30237995 30237995 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 30237995 30237995 CHRNA7 15 C C T 19 PCDH7 5099 genome.wustl.edu 36 4 30335169 30335169 + Silent SNP C C T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 30335169 30335169 PCDH7 4 C C T 22 C16orf58 64755 genome.wustl.edu 36 16 31418347 31418347 + Silent SNP C C A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 31418347 31418347 C16orf58 16 C C A 30 C12orf35 55196 genome.wustl.edu 36 12 32036675 32036675 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32036675 32036675 C12orf35 12 C C A 18 LOC728341 728341 genome.wustl.edu 36 17 36685561 36685561 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36685561 36685561 LOC728341 17 G G A 34 HAP1 9001 genome.wustl.edu 36 17 37142537 37142537 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37142537 37142537 HAP1 17 G G C 44 C15orf23 90417 genome.wustl.edu 36 15 38471498 38471498 + Silent SNP G G A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 38471498 38471498 C15orf23 15 G G A 34 KCNK16 83795 genome.wustl.edu 36 6 39393578 39393578 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 39393578 39393578 KCNK16 6 C C T 27 PTPRT 11122 genome.wustl.edu 36 20 40204018 40204018 + Silent SNP G G A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 40204018 40204018 PTPRT 20 G G A 47 NRXN1 9378 genome.wustl.edu 36 2 50002704 50002704 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50002704 50002704 NRXN1 2 C C A 31 DOCK3 1795 genome.wustl.edu 36 3 51249982 51249982 + Nonsense_Mutation SNP C C T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 51249982 51249982 DOCK3 3 C C T 23 GZMA 3001 genome.wustl.edu 36 5 54439842 54439842 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54439842 54439842 GZMA 5 G G A 37 LOC728416 728416 genome.wustl.edu 36 7 56771595 56771595 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 A A A C A C Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56771595 56771595 LOC728416 7 A A C 5 CDH8 1006 genome.wustl.edu 36 16 60247008 60247008 + Silent SNP G G T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 60247008 60247008 CDH8 16 G G T 35 VWCE 220001 genome.wustl.edu 36 11 60798568 60798568 + Silent SNP C C T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 60798568 60798568 VWCE 11 C C T 20 KHDRBS2 202559 genome.wustl.edu 36 6 62669178 62669178 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 62669178 62669178 KHDRBS2 6 A A T 11 ETAA1 54465 genome.wustl.edu 36 2 67490599 67490599 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 67490599 67490599 ETAA1 2 A A T 10 ACRC 93953 genome.wustl.edu 36 X 70728732 70728732 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70728732 70728732 ACRC 23 C C G 18 AMBN 258 genome.wustl.edu 36 4 71506708 71506708 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71506708 71506708 AMBN 4 C C A 21 ALMS1 7840 genome.wustl.edu 36 2 73533992 73533992 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 73533992 73533992 ALMS1 2 G G C 46 C1orf173 127254 genome.wustl.edu 36 1 74859093 74859093 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74859093 74859093 C1orf173 1 G G T 41 GNA14 9630 genome.wustl.edu 36 9 79239201 79239201 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 79239201 79239201 GNA14 9 C C A 30 VCAN 1462 genome.wustl.edu 36 5 82872381 82872381 + Silent SNP A A C novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 82872381 82872381 VCAN 5 A A C 14 ENSG00000211635 genome.wustl.edu 36 2 89897347 89897347 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 89897347 89897347 ENSG00000211635 2 C C G 29 FAT3 120114 genome.wustl.edu 36 11 91725185 91725185 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 91725185 91725185 FAT3 11 G G A 33 TGFBR3 7049 genome.wustl.edu 36 1 91958158 91958158 + Silent SNP G G A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 91958158 91958158 TGFBR3 1 G G A 46 CCDC132 55610 genome.wustl.edu 36 7 92823274 92823274 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 92823274 92823274 CCDC132 7 T T G 61 KIAA1409 57578 genome.wustl.edu 36 14 93149139 93149139 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 93149139 93149139 KIAA1409 14 G G A 38 LOC255374 255374 genome.wustl.edu 36 7 99563152 99563152 + Silent SNP C A A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C A A A A Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 99563152 99563152 LOC255374 7 C A A 27 RG9MTD1 54931 genome.wustl.edu 36 3 102767100 102767100 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 102767100 102767100 RG9MTD1 3 A A G 16 RINT1 60561 genome.wustl.edu 36 7 104974660 104974660 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 104974660 104974660 RINT1 7 G G T 42 SLC26A4 5172 genome.wustl.edu 36 7 107129654 107129654 + Silent SNP T T C novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 107129654 107129654 SLC26A4 7 T T C 62 COL4A5 1287 genome.wustl.edu 36 X 107570073 107570073 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 107570073 107570073 COL4A5 23 G G A 43 ARHGAP20 57569 genome.wustl.edu 36 11 109955919 109955919 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 109955919 109955919 ARHGAP20 11 G G T 44 ING1 3621 genome.wustl.edu 36 13 110170145 110170145 + Missense_Mutation SNP G T T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 110170145 110170145 ING1 13 G T T 44 CASP6 839 genome.wustl.edu 36 4 110838932 110838932 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 110838932 110838932 CASP6 4 A A C 8 LCT 3938 genome.wustl.edu 36 2 136311151 136311151 + Nonsense_Mutation SNP G G T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 136311151 136311151 LCT 2 G G T 45 PCDHB13 56123 genome.wustl.edu 36 5 140576064 140576064 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 140576064 140576064 PCDHB13 5 G G A 37 MAGEC2 51438 genome.wustl.edu 36 X 141118730 141118730 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 141118730 141118730 MAGEC2 23 A A G 12 ANP32C 23520 genome.wustl.edu 36 4 165338253 165338253 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 165338253 165338253 ANP32C 4 C C T 32 STX6 10228 genome.wustl.edu 36 1 179225768 179225768 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179225768 179225768 STX6 1 A A G 4 OR2V2 285659 genome.wustl.edu 36 5 180514948 180514948 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 180514948 180514948 OR2V2 5 C C A 30 RD3 343035 genome.wustl.edu 36 1 209721351 209721351 + Silent SNP G G A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 209721351 209721351 RD3 1 G G A 40 SI 6476 genome.wustl.edu 36 3 166259699 166259699 + Missense_Mutation SNP T C T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 T T C T T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Missense_Mutation SNP 166259699 166259699 SI 3 T C T 63 EVI5 7813 genome.wustl.edu 36 1 92941593 92941594 + Missense DNP AG AG GA novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 92941593 92941594 EVI5 1 AG AG GA 3 ZNF492 57615 genome.wustl.edu 36 19 22609118 22609118 + Splice_Site_SNP SNP T T A novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 22609118 22609118 ZNF492 19 T T A 59 CEP250 11190 genome.wustl.edu 36 20 33555271 33555271 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33555271 33555271 CEP250 20 A A G 11 STBD1 8987 genome.wustl.edu 36 4 77449958 77449958 + Missense_Mutation SNP C C A Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C C A C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77449958 77449958 STBD1 4 C C A 18 IL13 3596 genome.wustl.edu 36 5 132021929 132021929 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 132021929 132021929 IL13 5 T T G 58 OR12D2 26529 genome.wustl.edu 36 6 29473164 29473164 + Silent SNP C C T novel Unknown TCGA-24-1424-01 TCGA-24-1424-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 29473164 29473164 OR12D2 6 C C T 20