Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context PDE6B 5158 genome.wustl.edu 36 4 637931 637931 + Silent SNP G A A novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 G G A A G A Unknown Valid LOH 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 637931 637931 PDE6B 4 G A A 38 CNTN4 152330 genome.wustl.edu 36 3 3053974 3053974 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3053974 3053974 CNTN4 3 C C A 22 LOC100131257 genome.wustl.edu 36 7 7085167 7085167 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 7085167 7085167 LOC100131257 7 C C A 29 TP53 7157 genome.wustl.edu 36 17 7518982 7518982 + Nonsense_Mutation SNP C A A novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 7518982 7518982 TP53 17 C A A 30 MYH10 4628 genome.wustl.edu 36 17 8362699 8362699 + Missense_Mutation SNP C T T novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8362699 8362699 MYH10 17 C T T 19 TPTE 7179 genome.wustl.edu 36 21 9963816 9963816 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9963816 9963816 TPTE 21 G G T 33 DNAH5 1767 genome.wustl.edu 36 5 13917743 13917743 + Nonsense_Mutation SNP A A T novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 13917743 13917743 DNAH5 5 A A T 10 DNAH5 1767 genome.wustl.edu 36 5 13947789 13947789 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 13947789 13947789 DNAH5 5 C C T 26 MKL2 57496 genome.wustl.edu 36 16 14247013 14247013 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14247013 14247013 MKL2 16 T T G 56 PADI4 23569 genome.wustl.edu 36 1 17558442 17558442 + Silent SNP C C T novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 17558442 17558442 PADI4 1 C C T 32 OR4N4 283694 genome.wustl.edu 36 15 19884684 19884684 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19884684 19884684 OR4N4 15 A A T 4 KCNJ12 3768 genome.wustl.edu 36 17 21259375 21259375 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 G G G A G A Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21259375 21259375 KCNJ12 17 G G A 38 IFNA1 3439 genome.wustl.edu 36 9 21430580 21430580 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21430580 21430580 IFNA1 9 A A G 12 ATAD5 79915 genome.wustl.edu 36 17 26186388 26186388 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26186388 26186388 ATAD5 17 C C T 32 BAZ1A 11177 genome.wustl.edu 36 14 34401181 34401181 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 34401181 34401181 BAZ1A 14 T T A 62 LOC728448 728448 genome.wustl.edu 36 1 39792607 39792607 + Splice_Site_SNP SNP C C A novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C C A C A Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 39792607 39792607 LOC728448 1 C C A 18 CCR9 10803 genome.wustl.edu 36 3 45918252 45918252 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 45918252 45918252 CCR9 3 G G T 33 PKHD1 5314 genome.wustl.edu 36 6 51998297 51998297 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 51998297 51998297 PKHD1 6 C C G 29 TCF12 6938 genome.wustl.edu 36 15 55362041 55362041 + Silent SNP G G C novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 55362041 55362041 TCF12 15 G G C 42 PPM1H 57460 genome.wustl.edu 36 12 61374034 61374034 + Silent SNP G G A novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 61374034 61374034 PPM1H 12 G G A 47 SLC22A25 387601 genome.wustl.edu 36 11 62688035 62688035 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 62688035 62688035 SLC22A25 11 C C T 31 GPHB5 122876 genome.wustl.edu 36 14 62849570 62849570 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 62849570 62849570 GPHB5 14 T T C 62 ZNF446 55663 genome.wustl.edu 36 19 63680403 63680403 + Silent SNP A G G novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 A A G G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 63680403 63680403 ZNF446 19 A G G 8 GAL3ST3 89792 genome.wustl.edu 36 11 65567676 65567676 + Silent SNP C T T novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C T T T T Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 65567676 65567676 GAL3ST3 11 C T T 27 KBTBD8 84541 genome.wustl.edu 36 3 67141284 67141284 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 67141284 67141284 KBTBD8 3 C C G 21 ADHFE1 137872 genome.wustl.edu 36 8 67520078 67520078 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 67520078 67520078 ADHFE1 8 C C A 18 UGT2A1 10941 genome.wustl.edu 36 4 70499620 70499620 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70499620 70499620 UGT2A1 4 C C T 19 TRPA1 8989 genome.wustl.edu 36 8 73112841 73112841 + Silent SNP A A G novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 73112841 73112841 TRPA1 8 A A G 3 ENSG00000179799 genome.wustl.edu 36 3 75489141 75489141 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 75489141 75489141 ENSG00000179799 3 C C G 29 NARS2 79731 genome.wustl.edu 36 11 77957396 77957396 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77957396 77957396 NARS2 11 C C G 20 GRID1 2894 genome.wustl.edu 36 10 87956304 87956304 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 87956304 87956304 GRID1 10 G G A 40 IGKV4-1 genome.wustl.edu 36 2 88966564 88966564 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 88966564 88966564 IGKV4-1 2 G G T 36 ENSG00000204456 genome.wustl.edu 36 11 89139788 89139788 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 89139788 89139788 ENSG00000204456 11 A A G 12 EPHA3 2042 genome.wustl.edu 36 3 89582187 89582187 + Silent SNP G G A novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 89582187 89582187 EPHA3 3 G G A 33 TRIM4 89122 genome.wustl.edu 36 7 99327849 99327849 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 99327849 99327849 TRIM4 7 A A G 9 ADH1C 126 genome.wustl.edu 36 4 100476955 100476955 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100476955 100476955 ADH1C 4 T T C 49 RHOF 54509 genome.wustl.edu 36 12 120701841 120701841 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 120701841 120701841 RHOF 12 G G C 38 ACPP 55 genome.wustl.edu 36 3 133558366 133558366 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 133558366 133558366 ACPP 3 G G T 48 SSBP1 6742 genome.wustl.edu 36 7 141089911 141089911 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 141089911 141089911 SSBP1 7 T T G 49 HCN3 57657 genome.wustl.edu 36 1 153520961 153520961 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 153520961 153520961 HCN3 1 C C T 31 ADIPOQ 9370 genome.wustl.edu 36 3 188054895 188054895 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 188054895 188054895 ADIPOQ 3 G G T 44 C1orf107 27042 genome.wustl.edu 36 1 208082350 208082351 + Missense DNP GG GG CT novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 GG GG GG CT GG GG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 208082350 208082351 C1orf107 1 GG GG CT 47 ILKAP 80895 genome.wustl.edu 36 2 238767691 238767691 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 238767691 238767691 ILKAP 2 A A G 1 EXO1 9156 genome.wustl.edu 36 1 240083293 240083293 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 240083293 240083293 EXO1 1 G G A 34 CACNA2D4 93589 genome.wustl.edu 36 12 1866479 1866479 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1413-01 TCGA-24-1413-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1866479 1866479 CACNA2D4 12 C C A 29