Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context TRPM5 29850 genome.wustl.edu 36 11 2389468 2389468 + Silent SNP G C C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 2389468 2389468 TRPM5 11 G C C 42 TMC2 117532 genome.wustl.edu 36 20 2540923 2540923 + Silent SNP C C A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 2540923 2540923 TMC2 20 C C A 22 PRMT8 56341 genome.wustl.edu 36 12 3556325 3556325 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3556325 3556325 PRMT8 12 T T G 51 RBAK 57786 genome.wustl.edu 36 7 5070312 5070312 + Silent SNP T T C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 5070312 5070312 RBAK 7 T T C 51 LOC643503 643503 genome.wustl.edu 36 20 6129907 6129907 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6129907 6129907 LOC643503 20 G G C 42 TP53 7157 genome.wustl.edu 36 17 7517743 7517743 + Splice_Site_SNP SNP C T T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 7517743 7517743 TP53 17 C T T 18 FOXJ2 55810 genome.wustl.edu 36 12 8091762 8091762 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8091762 8091762 FOXJ2 12 G G A 43 ENSG00000219492 genome.wustl.edu 36 4 8998035 8998035 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8998035 8998035 ENSG00000219492 4 G G T 48 ZNF491 126069 genome.wustl.edu 36 19 11778171 11778171 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 11778171 11778171 ZNF491 19 T T A 60 EPHA2 1969 genome.wustl.edu 36 1 16328605 16328605 + Missense_Mutation SNP C G G novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 16328605 16328605 EPHA2 1 C G G 26 ZNF682 91120 genome.wustl.edu 36 19 19978349 19978349 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19978349 19978349 ZNF682 19 G G A 42 HNRNPA2B1 3181 genome.wustl.edu 36 7 26199751 26199751 + Missense_Mutation SNP G C C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26199751 26199751 HNRNPA2B1 7 G C C 34 RABEP2 79874 genome.wustl.edu 36 16 28843928 28843928 + Missense_Mutation SNP C A A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C A A A A Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 28843928 28843928 RABEP2 16 C A A 26 FNDC8 54752 genome.wustl.edu 36 17 30481491 30481491 + Silent SNP C T T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 30481491 30481491 FNDC8 17 C T T 22 BRCA2 675 genome.wustl.edu 36 13 31811404 31811404 + Missense_Mutation SNP A G G novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 A A G G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31811404 31811404 BRCA2 13 A G G 13 C21orf63 59271 genome.wustl.edu 36 21 32809250 32809250 + Missense_Mutation SNP G T T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32809250 32809250 C21orf63 21 G T T 36 FAM83C 128876 genome.wustl.edu 36 20 33337857 33337857 + Silent SNP C C G novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 33337857 33337857 FAM83C 20 C C G 21 PRLR 5618 genome.wustl.edu 36 5 35120353 35120353 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35120353 35120353 PRLR 5 G G T 36 FAM83D 81610 genome.wustl.edu 36 20 37014247 37014247 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37014247 37014247 FAM83D 20 G G T 36 PRKD3 23683 genome.wustl.edu 36 2 37371626 37371626 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37371626 37371626 PRKD3 2 A A C 3 XIRP1 165904 genome.wustl.edu 36 3 39202075 39202075 + Missense_Mutation SNP T A A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 T T A A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 39202075 39202075 XIRP1 3 T A A 58 BMP8B 656 genome.wustl.edu 36 1 40002958 40002958 + Silent SNP T T C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 40002958 40002958 BMP8B 1 T T C 55 MX2 4600 genome.wustl.edu 36 21 41671777 41671777 + Silent SNP C T T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 41671777 41671777 MX2 21 C T T 27 UMODL1 89766 genome.wustl.edu 36 21 42406940 42406940 + Missense_Mutation SNP C A A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42406940 42406940 UMODL1 21 C A A 25 TCEB3B 51224 genome.wustl.edu 36 18 42814047 42814047 + Silent SNP C C T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 42814047 42814047 TCEB3B 18 C C T 25 ZNF197 10168 genome.wustl.edu 36 3 44659351 44659351 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44659351 44659351 ZNF197 3 C C A 29 BSN 8927 genome.wustl.edu 36 3 49664690 49664690 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49664690 49664690 BSN 3 C C A 17 CLPTM1 1209 genome.wustl.edu 36 19 50169634 50169634 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50169634 50169634 CLPTM1 19 G G T 41 DDC 1644 genome.wustl.edu 36 7 50564418 50564418 + Silent SNP C T T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 50564418 50564418 DDC 7 C T T 21 OR2AP1 genome.wustl.edu 36 12 54255095 54255095 + Silent SNP G G A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 54255095 54255095 OR2AP1 12 G G A 46 EXOC1 55763 genome.wustl.edu 36 4 56457812 56457812 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56457812 56457812 EXOC1 4 T T G 57 AASDH 132949 genome.wustl.edu 36 4 56910752 56910752 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56910752 56910752 AASDH 4 C C A 20 POLR2B 5431 genome.wustl.edu 36 4 57560554 57560554 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 57560554 57560554 POLR2B 4 T T A 59 OR5B21 219968 genome.wustl.edu 36 11 58031608 58031608 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 58031608 58031608 OR5B21 11 G G C 35 LRRC7 57554 genome.wustl.edu 36 1 70346078 70346078 + Missense_Mutation SNP C A A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70346078 70346078 LRRC7 1 C A A 24 ENSG00000215116 genome.wustl.edu 36 X 70629047 70629047 + Silent SNP G T T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G T T T T Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 70629047 70629047 ENSG00000215116 23 G T T 38 QRICH2 84074 genome.wustl.edu 36 17 71799599 71799599 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71799599 71799599 QRICH2 17 C C A 18 KIAA2022 340533 genome.wustl.edu 36 X 73876714 73876714 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 73876714 73876714 KIAA2022 23 T T C 54 ALDH1A1 216 genome.wustl.edu 36 9 74733749 74733749 + Silent SNP C C T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 74733749 74733749 ALDH1A1 9 C C T 20 C17orf70 80233 genome.wustl.edu 36 17 77128295 77128295 + Missense_Mutation SNP C A A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C A A C A Unknown Valid LOH 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77128295 77128295 C17orf70 17 C A A 27 ALG8 79053 genome.wustl.edu 36 11 77516105 77516105 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77516105 77516105 ALG8 11 G G C 39 KCNMA1 3778 genome.wustl.edu 36 10 78614645 78614645 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 78614645 78614645 KCNMA1 10 A A C 9 PDE8A 5151 genome.wustl.edu 36 15 83470593 83470593 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 83470593 83470593 PDE8A 15 A A C 9 AGTPBP1 23287 genome.wustl.edu 36 9 87497523 87497523 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 87497523 87497523 AGTPBP1 9 C C T 24 RIPK2 8767 genome.wustl.edu 36 8 90851276 90851276 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 90851276 90851276 RIPK2 8 T T A 50 SLC26A7 115111 genome.wustl.edu 36 8 92376998 92376998 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 92376998 92376998 SLC26A7 8 T T G 51 TRRAP 8295 genome.wustl.edu 36 7 98439826 98439826 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 98439826 98439826 TRRAP 7 G G C 41 ENSG00000214350 genome.wustl.edu 36 15 100122392 100122392 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 T T T C T C Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100122392 100122392 ENSG00000214350 15 T T C 57 AHNAK2 113146 genome.wustl.edu 36 14 104477692 104477692 + Silent SNP A A C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 104477692 104477692 AHNAK2 14 A A C 3 VAV3 10451 genome.wustl.edu 36 1 108114816 108114816 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 108114816 108114816 VAV3 1 C C A 32 CHIA 27159 genome.wustl.edu 36 1 111662823 111662823 + Silent SNP G G A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 111662823 111662823 CHIA 1 G G A 35 DRD3 1814 genome.wustl.edu 36 3 115373432 115373432 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 115373432 115373432 DRD3 3 G G T 42 DPP10 57628 genome.wustl.edu 36 2 116163927 116163927 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 116163927 116163927 DPP10 2 T T A 58 ATP1A1 476 genome.wustl.edu 36 1 116734487 116734487 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 116734487 116734487 ATP1A1 1 C C T 23 DOCK11 139818 genome.wustl.edu 36 X 117584002 117584002 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 117584002 117584002 DOCK11 23 A A G 5 DCBLD1 285761 genome.wustl.edu 36 6 117960220 117960220 + Silent SNP G T T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 117960220 117960220 DCBLD1 6 G T T 41 SPAG17 200162 genome.wustl.edu 36 1 118307999 118307999 + Silent SNP T T C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 118307999 118307999 SPAG17 1 T T C 63 AACS 65985 genome.wustl.edu 36 12 124175451 124175451 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124175451 124175451 AACS 12 C C T 22 FER1L6 654463 genome.wustl.edu 36 8 125178770 125178770 + Silent SNP G G A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 125178770 125178770 FER1L6 8 G G A 42 MKI67 4288 genome.wustl.edu 36 10 129791228 129791228 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 129791228 129791228 MKI67 10 G G C 33 FAM135B 51059 genome.wustl.edu 36 8 139222636 139222636 + Silent SNP G C C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 139222636 139222636 FAM135B 8 G C C 43 DZIP1L 199221 genome.wustl.edu 36 3 139305138 139305138 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 139305138 139305138 DZIP1L 3 C C G 28 PCDHGC5 56097 genome.wustl.edu 36 5 140870809 140870809 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 140870809 140870809 PCDHGC5 5 T T G 58 ZBTB38 253461 genome.wustl.edu 36 3 142647243 142647243 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 142647243 142647243 ZBTB38 3 C C A 18 RASA2 5922 genome.wustl.edu 36 3 142713785 142713785 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 142713785 142713785 RASA2 3 G G A 40 F8 2157 genome.wustl.edu 36 X 153786280 153786280 + Silent SNP C C A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 153786280 153786280 F8 23 C C A 21 NTRK1 4914 genome.wustl.edu 36 1 155104547 155104547 + Silent SNP T T C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 155104547 155104547 NTRK1 1 T T C 60 ITK 3702 genome.wustl.edu 36 5 156568576 156568576 + Silent SNP G G A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 156568576 156568576 ITK 5 G G A 40 MLLT4 4301 genome.wustl.edu 36 6 168095207 168095207 + Nonsense_Mutation SNP A T T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 A A T T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 168095207 168095207 MLLT4 6 A T T 11 HNRNPA3 220988 genome.wustl.edu 36 2 177790742 177790742 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 177790742 177790742 HNRNPA3 2 G G T 41 FAT1 2195 genome.wustl.edu 36 4 187867507 187867507 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 187867507 187867507 FAT1 4 A A G 9 MAP2 4133 genome.wustl.edu 36 2 210226218 210226218 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 210226218 210226218 MAP2 2 C C G 17 GPBAR1 151306 genome.wustl.edu 36 2 218836429 218836429 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 218836429 218836429 GPBAR1 2 C C G 32 GALNT2 2590 genome.wustl.edu 36 1 228452888 228452888 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 228452888 228452888 GALNT2 1 A A T 3 ADSS 159 genome.wustl.edu 36 1 242645991 242645991 + Silent SNP G G C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 242645991 242645991 ADSS 1 G G C 47 ZNF791 163049 genome.wustl.edu 36 19 12600521 12600522 + Frame_Shift_Del DEL TC TC - novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 TC TC Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 12600521 12600522 ZNF791 19 TC TC - 62 ZFPM2 23414 genome.wustl.edu 36 8 106883918 106883925 + Frame_Shift_Del DEL TTTCCAAA TTTCCAAA - novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 TTTCCAAA TTTCCAAA TTTCCAAA - TTTCCAAA TTTCCAAA Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 106883918 106883925 ZFPM2 8 TTTCCAAA TTTCCAAA - 60 ANKAR 150709 genome.wustl.edu 36 2 190310768 190310768 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 190310768 190310768 ANKAR 2 C C G 32 AIFM3 150209 genome.wustl.edu 36 22 19658884 19658884 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19658884 19658884 AIFM3 22 G G A 34 LOC100130883 genome.wustl.edu 36 3 129156 129156 + Silent SNP G C C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 129156 129156 LOC100130883 3 G C C 33 HMX1 3166 genome.wustl.edu 36 4 43721 43721 + Silent SNP C C T novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 43721 43721 HMX1 4 C C T 31 C7orf47 221908 genome.wustl.edu 36 7 99870998 99870998 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 99870998 99870998 C7orf47 7 G G C 35 THBS2 7058 genome.wustl.edu 36 6 169364300 169364301 + Frame_Shift_Ins INS - - C Unknown TCGA-24-1103-01 TCGA-24-1103-10 - - - C - - Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 169364300 169364301 THBS2 6 - - C 10 NDUFV2 4729 genome.wustl.edu 36 18 9112597 9112597 + Silent SNP G G A Unknown TCGA-24-1103-01 TCGA-24-1103-10 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 9112597 9112597 NDUFV2 18 G G A 36